Prediction of Rhizoma Drynariae Targets in the Treatment of Osteoarthritis Based on Network Pharmacology and Experimental Verification
Rhizoma Drynariae has been widely used for the treatment of osteoarthritis (OA), but its potential targets and molecular mechanisms remain to be further explored. Targets of Rhizoma Drynariae and OA were predicted by relevant databases, and a protein-protein interaction (PPI) network was constructed...
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description | Rhizoma Drynariae has been widely used for the treatment of osteoarthritis (OA), but its potential targets and molecular mechanisms remain to be further explored. Targets of Rhizoma Drynariae and OA were predicted by relevant databases, and a protein-protein interaction (PPI) network was constructed to identify key targets. The Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis was performed to obtain related pathways and then select significant pathways associated with OA. The OA chondrocyte model was established by inflammatory factor-induced SW1353 chondrocytes, and molecular docking was conducted to verify the above theoretical prediction. The results showed that a total of 86 Rhizoma Drynariae-OA interaction targets were identified, among which IL-6 and AKT1 were the key targets in the PPI network. Luteolin was the most critical component of Rhizoma Drynariae. KEGG results indicated that the effects of Rhizoma Drynariae on OA are associated with the PI3K/AKT, TNF, IL-17, apoptosis, and HIF-1 signaling pathway. The PI3K/AKT pathway can activate the downstream NF-κB pathway and further regulate the transcription and expression of downstream IL-6, IL-17, HIF-1α, Bax, and TNF, suggesting that the PI3K/AKT/NF-κB pathway is the critical pathway in the treatment of OA with Rhizoma Drynariae. Active components of Rhizoma Drynariae and key proteins of the PI3K/AKT/NF-κB signaling pathway were subjected to molecular docking, whose results showed that luteolin and IKK-α played a critical role. In vitro experiments indicated that both aqueous extracts of Rhizoma Drynariae (AERD) and luteolin inhibited the expression of IL-6 and HIF-1α and suppressed the activation of PI3K/AKT/NF-κB, IL-17, and TNF pathways. The measurement of mitochondrial membrane potential (Δψm) indicated that AERD and luteolin can decrease the LPS-induced early apoptotic cells. Luteolin had a more prominent inhibitory effect than AERD in the abovementioned in vitro experiments. In conclusion, the therapeutic mechanism of Rhizoma Drynariae against OA may be closely related to the inhibition of the PI3K/AKT/NF-κB pathway and downstream pathways, and luteolin plays a vital role in the treatment. |
doi_str_mv | 10.1155/2021/5233462 |
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fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8616695</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2604469920</sourcerecordid><originalsourceid>FETCH-LOGICAL-c425t-a93c51e73ece04d097f6d5cdd4388859bddab5877185c39aa2d6f4504b74f7e13</originalsourceid><addsrcrecordid>eNp9kc1u1DAUhSMEoj-w4wEssUGCobZjx_YGCUr5kSpaoYLYWXfsm4lLEg-2p2V4AJ6bRDOqBAtW91z58_GxTlU9YfQlY1KecMrZieR1LRp-rzpkSrCF4Frfv9Pq20F1lPM1pdwopR5WB7XQgkptDqvflwl9cCXEkcSWfO7CrzgAeZu2I6QASK4grbBkEkZSumlNCGXAscz0RS4YIZUuhRIyeQMZPZmMPmG5jek7uewgDeBiH1dbAqMnZz_XmMJ8HXrydZJtcDC__ah60EKf8fF-Hldf3p1dnX5YnF-8_3j6-nzhBJdlAaZ2kqGq0SEVnhrVNl4670WttZZm6T0spVaKaelqA8B90wpJxVKJViGrj6tXO9_1Zjmgd1OSBL1dT6EgbW2EYP8-GUNnV_HG6oY1jZGTwbO9QYo_NpiLHUJ22PcwYtxkyxsqRGMMpxP69B_0Om7SOH1vpmppGJUz9WJHuRRzTtjehWHUzgXbuWC7L3jCn-_wLowebsP_6T97F6at</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2603591050</pqid></control><display><type>article</type><title>Prediction of Rhizoma Drynariae Targets in the Treatment of Osteoarthritis Based on Network Pharmacology and Experimental Verification</title><source>Wiley Online Library Open Access</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central</source><source>Alma/SFX Local Collection</source><source>PubMed Central Open Access</source><creator>Chen, Guang-yao ; Liu, Xiao-yu ; Chen, Jia-qi ; Yu, Xin-bo ; Luo, Jing ; Yan, Ze-ran ; Tao, Qing-wen</creator><contributor>Long, Nguyen Phuoc</contributor><creatorcontrib>Chen, Guang-yao ; Liu, Xiao-yu ; Chen, Jia-qi ; Yu, Xin-bo ; Luo, Jing ; Yan, Ze-ran ; Tao, Qing-wen ; Long, Nguyen Phuoc</creatorcontrib><description>Rhizoma Drynariae has been widely used for the treatment of osteoarthritis (OA), but its potential targets and molecular mechanisms remain to be further explored. Targets of Rhizoma Drynariae and OA were predicted by relevant databases, and a protein-protein interaction (PPI) network was constructed to identify key targets. The Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis was performed to obtain related pathways and then select significant pathways associated with OA. The OA chondrocyte model was established by inflammatory factor-induced SW1353 chondrocytes, and molecular docking was conducted to verify the above theoretical prediction. The results showed that a total of 86 Rhizoma Drynariae-OA interaction targets were identified, among which IL-6 and AKT1 were the key targets in the PPI network. Luteolin was the most critical component of Rhizoma Drynariae. KEGG results indicated that the effects of Rhizoma Drynariae on OA are associated with the PI3K/AKT, TNF, IL-17, apoptosis, and HIF-1 signaling pathway. The PI3K/AKT pathway can activate the downstream NF-κB pathway and further regulate the transcription and expression of downstream IL-6, IL-17, HIF-1α, Bax, and TNF, suggesting that the PI3K/AKT/NF-κB pathway is the critical pathway in the treatment of OA with Rhizoma Drynariae. Active components of Rhizoma Drynariae and key proteins of the PI3K/AKT/NF-κB signaling pathway were subjected to molecular docking, whose results showed that luteolin and IKK-α played a critical role. In vitro experiments indicated that both aqueous extracts of Rhizoma Drynariae (AERD) and luteolin inhibited the expression of IL-6 and HIF-1α and suppressed the activation of PI3K/AKT/NF-κB, IL-17, and TNF pathways. The measurement of mitochondrial membrane potential (Δψm) indicated that AERD and luteolin can decrease the LPS-induced early apoptotic cells. Luteolin had a more prominent inhibitory effect than AERD in the abovementioned in vitro experiments. In conclusion, the therapeutic mechanism of Rhizoma Drynariae against OA may be closely related to the inhibition of the PI3K/AKT/NF-κB pathway and downstream pathways, and luteolin plays a vital role in the treatment.</description><identifier>ISSN: 1741-427X</identifier><identifier>EISSN: 1741-4288</identifier><identifier>DOI: 10.1155/2021/5233462</identifier><identifier>PMID: 34840589</identifier><language>eng</language><publisher>New York: Hindawi</publisher><subject>1-Phosphatidylinositol 3-kinase ; AKT protein ; AKT1 protein ; Antibodies ; Apoptosis ; Arthritis ; BAX protein ; Binding sites ; Biotechnology ; Chondrocytes ; Chromatography ; Cytokines ; Experiments ; Genes ; Genomes ; Hypoxia-inducible factor 1a ; IKK protein ; Inflammation ; Interleukin 17 ; Interleukin 6 ; Life sciences ; Ligands ; Lipopolysaccharides ; Mass spectrometry ; Medical research ; Membrane potential ; Mitochondria ; Molecular modelling ; NF-κB protein ; Nonsteroidal anti-inflammatory drugs ; Osteoarthritis ; Pharmacology ; Protein interaction ; Proteins ; Scientific imaging ; Signal transduction ; Transcription ; Tumor necrosis factor ; Tumor necrosis factor-TNF</subject><ispartof>Evidence-based complementary and alternative medicine, 2021-11, Vol.2021, p.1-15</ispartof><rights>Copyright © 2021 Guang-yao Chen et al.</rights><rights>Copyright © 2021 Guang-yao Chen et al. This is an open access article distributed under the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. https://creativecommons.org/licenses/by/4.0</rights><rights>Copyright © 2021 Guang-yao Chen et al. 2021</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c425t-a93c51e73ece04d097f6d5cdd4388859bddab5877185c39aa2d6f4504b74f7e13</citedby><cites>FETCH-LOGICAL-c425t-a93c51e73ece04d097f6d5cdd4388859bddab5877185c39aa2d6f4504b74f7e13</cites><orcidid>0000-0003-4105-0314 ; 0000-0002-1643-5450 ; 0000-0002-2454-2168 ; 0000-0003-2366-5147 ; 0000-0002-6004-289X ; 0000-0002-9163-8426 ; 0000-0002-9415-1197</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8616695/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8616695/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids></links><search><contributor>Long, Nguyen Phuoc</contributor><creatorcontrib>Chen, Guang-yao</creatorcontrib><creatorcontrib>Liu, Xiao-yu</creatorcontrib><creatorcontrib>Chen, Jia-qi</creatorcontrib><creatorcontrib>Yu, Xin-bo</creatorcontrib><creatorcontrib>Luo, Jing</creatorcontrib><creatorcontrib>Yan, Ze-ran</creatorcontrib><creatorcontrib>Tao, Qing-wen</creatorcontrib><title>Prediction of Rhizoma Drynariae Targets in the Treatment of Osteoarthritis Based on Network Pharmacology and Experimental Verification</title><title>Evidence-based complementary and alternative medicine</title><description>Rhizoma Drynariae has been widely used for the treatment of osteoarthritis (OA), but its potential targets and molecular mechanisms remain to be further explored. Targets of Rhizoma Drynariae and OA were predicted by relevant databases, and a protein-protein interaction (PPI) network was constructed to identify key targets. The Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis was performed to obtain related pathways and then select significant pathways associated with OA. The OA chondrocyte model was established by inflammatory factor-induced SW1353 chondrocytes, and molecular docking was conducted to verify the above theoretical prediction. The results showed that a total of 86 Rhizoma Drynariae-OA interaction targets were identified, among which IL-6 and AKT1 were the key targets in the PPI network. Luteolin was the most critical component of Rhizoma Drynariae. KEGG results indicated that the effects of Rhizoma Drynariae on OA are associated with the PI3K/AKT, TNF, IL-17, apoptosis, and HIF-1 signaling pathway. The PI3K/AKT pathway can activate the downstream NF-κB pathway and further regulate the transcription and expression of downstream IL-6, IL-17, HIF-1α, Bax, and TNF, suggesting that the PI3K/AKT/NF-κB pathway is the critical pathway in the treatment of OA with Rhizoma Drynariae. Active components of Rhizoma Drynariae and key proteins of the PI3K/AKT/NF-κB signaling pathway were subjected to molecular docking, whose results showed that luteolin and IKK-α played a critical role. In vitro experiments indicated that both aqueous extracts of Rhizoma Drynariae (AERD) and luteolin inhibited the expression of IL-6 and HIF-1α and suppressed the activation of PI3K/AKT/NF-κB, IL-17, and TNF pathways. The measurement of mitochondrial membrane potential (Δψm) indicated that AERD and luteolin can decrease the LPS-induced early apoptotic cells. Luteolin had a more prominent inhibitory effect than AERD in the abovementioned in vitro experiments. In conclusion, the therapeutic mechanism of Rhizoma Drynariae against OA may be closely related to the inhibition of the PI3K/AKT/NF-κB pathway and downstream pathways, and luteolin plays a vital role in the treatment.</description><subject>1-Phosphatidylinositol 3-kinase</subject><subject>AKT protein</subject><subject>AKT1 protein</subject><subject>Antibodies</subject><subject>Apoptosis</subject><subject>Arthritis</subject><subject>BAX protein</subject><subject>Binding sites</subject><subject>Biotechnology</subject><subject>Chondrocytes</subject><subject>Chromatography</subject><subject>Cytokines</subject><subject>Experiments</subject><subject>Genes</subject><subject>Genomes</subject><subject>Hypoxia-inducible factor 1a</subject><subject>IKK protein</subject><subject>Inflammation</subject><subject>Interleukin 17</subject><subject>Interleukin 6</subject><subject>Life sciences</subject><subject>Ligands</subject><subject>Lipopolysaccharides</subject><subject>Mass spectrometry</subject><subject>Medical research</subject><subject>Membrane potential</subject><subject>Mitochondria</subject><subject>Molecular modelling</subject><subject>NF-κB protein</subject><subject>Nonsteroidal anti-inflammatory drugs</subject><subject>Osteoarthritis</subject><subject>Pharmacology</subject><subject>Protein interaction</subject><subject>Proteins</subject><subject>Scientific imaging</subject><subject>Signal transduction</subject><subject>Transcription</subject><subject>Tumor necrosis factor</subject><subject>Tumor necrosis 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of Rhizoma Drynariae Targets in the Treatment of Osteoarthritis Based on Network Pharmacology and Experimental Verification</title><author>Chen, Guang-yao ; Liu, Xiao-yu ; Chen, Jia-qi ; Yu, Xin-bo ; Luo, Jing ; Yan, Ze-ran ; Tao, Qing-wen</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c425t-a93c51e73ece04d097f6d5cdd4388859bddab5877185c39aa2d6f4504b74f7e13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>1-Phosphatidylinositol 3-kinase</topic><topic>AKT protein</topic><topic>AKT1 protein</topic><topic>Antibodies</topic><topic>Apoptosis</topic><topic>Arthritis</topic><topic>BAX protein</topic><topic>Binding sites</topic><topic>Biotechnology</topic><topic>Chondrocytes</topic><topic>Chromatography</topic><topic>Cytokines</topic><topic>Experiments</topic><topic>Genes</topic><topic>Genomes</topic><topic>Hypoxia-inducible factor 1a</topic><topic>IKK protein</topic><topic>Inflammation</topic><topic>Interleukin 17</topic><topic>Interleukin 6</topic><topic>Life sciences</topic><topic>Ligands</topic><topic>Lipopolysaccharides</topic><topic>Mass spectrometry</topic><topic>Medical research</topic><topic>Membrane potential</topic><topic>Mitochondria</topic><topic>Molecular modelling</topic><topic>NF-κB protein</topic><topic>Nonsteroidal anti-inflammatory drugs</topic><topic>Osteoarthritis</topic><topic>Pharmacology</topic><topic>Protein interaction</topic><topic>Proteins</topic><topic>Scientific imaging</topic><topic>Signal transduction</topic><topic>Transcription</topic><topic>Tumor necrosis factor</topic><topic>Tumor necrosis factor-TNF</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chen, Guang-yao</creatorcontrib><creatorcontrib>Liu, Xiao-yu</creatorcontrib><creatorcontrib>Chen, Jia-qi</creatorcontrib><creatorcontrib>Yu, Xin-bo</creatorcontrib><creatorcontrib>Luo, 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of Osteoarthritis Based on Network Pharmacology and Experimental Verification</atitle><jtitle>Evidence-based complementary and alternative medicine</jtitle><date>2021-11-18</date><risdate>2021</risdate><volume>2021</volume><spage>1</spage><epage>15</epage><pages>1-15</pages><issn>1741-427X</issn><eissn>1741-4288</eissn><abstract>Rhizoma Drynariae has been widely used for the treatment of osteoarthritis (OA), but its potential targets and molecular mechanisms remain to be further explored. Targets of Rhizoma Drynariae and OA were predicted by relevant databases, and a protein-protein interaction (PPI) network was constructed to identify key targets. The Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis was performed to obtain related pathways and then select significant pathways associated with OA. The OA chondrocyte model was established by inflammatory factor-induced SW1353 chondrocytes, and molecular docking was conducted to verify the above theoretical prediction. The results showed that a total of 86 Rhizoma Drynariae-OA interaction targets were identified, among which IL-6 and AKT1 were the key targets in the PPI network. Luteolin was the most critical component of Rhizoma Drynariae. KEGG results indicated that the effects of Rhizoma Drynariae on OA are associated with the PI3K/AKT, TNF, IL-17, apoptosis, and HIF-1 signaling pathway. The PI3K/AKT pathway can activate the downstream NF-κB pathway and further regulate the transcription and expression of downstream IL-6, IL-17, HIF-1α, Bax, and TNF, suggesting that the PI3K/AKT/NF-κB pathway is the critical pathway in the treatment of OA with Rhizoma Drynariae. Active components of Rhizoma Drynariae and key proteins of the PI3K/AKT/NF-κB signaling pathway were subjected to molecular docking, whose results showed that luteolin and IKK-α played a critical role. In vitro experiments indicated that both aqueous extracts of Rhizoma Drynariae (AERD) and luteolin inhibited the expression of IL-6 and HIF-1α and suppressed the activation of PI3K/AKT/NF-κB, IL-17, and TNF pathways. The measurement of mitochondrial membrane potential (Δψm) indicated that AERD and luteolin can decrease the LPS-induced early apoptotic cells. Luteolin had a more prominent inhibitory effect than AERD in the abovementioned in vitro experiments. In conclusion, the therapeutic mechanism of Rhizoma Drynariae against OA may be closely related to the inhibition of the PI3K/AKT/NF-κB pathway and downstream pathways, and luteolin plays a vital role in the treatment.</abstract><cop>New York</cop><pub>Hindawi</pub><pmid>34840589</pmid><doi>10.1155/2021/5233462</doi><tpages>15</tpages><orcidid>https://orcid.org/0000-0003-4105-0314</orcidid><orcidid>https://orcid.org/0000-0002-1643-5450</orcidid><orcidid>https://orcid.org/0000-0002-2454-2168</orcidid><orcidid>https://orcid.org/0000-0003-2366-5147</orcidid><orcidid>https://orcid.org/0000-0002-6004-289X</orcidid><orcidid>https://orcid.org/0000-0002-9163-8426</orcidid><orcidid>https://orcid.org/0000-0002-9415-1197</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | 1-Phosphatidylinositol 3-kinase AKT protein AKT1 protein Antibodies Apoptosis Arthritis BAX protein Binding sites Biotechnology Chondrocytes Chromatography Cytokines Experiments Genes Genomes Hypoxia-inducible factor 1a IKK protein Inflammation Interleukin 17 Interleukin 6 Life sciences Ligands Lipopolysaccharides Mass spectrometry Medical research Membrane potential Mitochondria Molecular modelling NF-κB protein Nonsteroidal anti-inflammatory drugs Osteoarthritis Pharmacology Protein interaction Proteins Scientific imaging Signal transduction Transcription Tumor necrosis factor Tumor necrosis factor-TNF |
title | Prediction of Rhizoma Drynariae Targets in the Treatment of Osteoarthritis Based on Network Pharmacology and Experimental Verification |
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