Towards Raman-Based Screening of Acute Lymphoblastic Leukemia-Type B (B-ALL) Subtypes
Acute lymphoblastic leukemia (ALL) is the most common type of malignant neoplasms in the pediatric population. B-cell precursor ALLs (BCP-ALLs) are derived from the progenitors of B lymphocytes. Traditionally, risk factors stratifying therapy in ALL patients included age at diagnosis, initial leukoc...
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creator | Leszczenko, Patrycja Borek-Dorosz, Aleksandra Nowakowska, Anna Maria Adamczyk, Adriana Kashyrskaya, Sviatlana Jakubowska, Justyna Ząbczyńska, Marta Pastorczak, Agata Ostrowska, Kinga Baranska, Malgorzata Marzec, Katarzyna Maria Majzner, Katarzyna |
description | Acute lymphoblastic leukemia (ALL) is the most common type of malignant neoplasms in the pediatric population. B-cell precursor ALLs (BCP-ALLs) are derived from the progenitors of B lymphocytes. Traditionally, risk factors stratifying therapy in ALL patients included age at diagnosis, initial leukocytosis, and the response to chemotherapy. Currently, treatment intensity is modified according to the presence of specific gene alterations in the leukemic genome. Raman imaging is a promising diagnostic tool, which enables the molecular characterization of cells and differentiation of subtypes of leukemia in clinical samples. This study aimed to characterize and distinguish cells isolated from the bone marrow of patients suffering from three subtypes of BCP-ALL, defined by gene rearrangements, i.e., BCR-ABL1 (Philadelphia-positive, t(9;22)), TEL-AML1 (t(12;21)) and TCF3-PBX1 (t(1;19)), using single-cell Raman imaging combined with multivariate statistical analysis. Spectra collected from clinical samples were compared with single-cell spectra of B-cells collected from healthy donors, constituting the control group. We demonstrated that Raman spectra of normal B cells strongly differ from spectra of their malignant counterparts, especially in the intensity of bands, which can be assigned to nucleic acids. We also showed that the identification of leukemia subtypes could be automated with the use of chemometric methods. Results prove the clinical suitability of Raman imaging for the identification of spectroscopic markers characterizing leukemia cells. |
doi_str_mv | 10.3390/cancers13215483 |
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B-cell precursor ALLs (BCP-ALLs) are derived from the progenitors of B lymphocytes. Traditionally, risk factors stratifying therapy in ALL patients included age at diagnosis, initial leukocytosis, and the response to chemotherapy. Currently, treatment intensity is modified according to the presence of specific gene alterations in the leukemic genome. Raman imaging is a promising diagnostic tool, which enables the molecular characterization of cells and differentiation of subtypes of leukemia in clinical samples. This study aimed to characterize and distinguish cells isolated from the bone marrow of patients suffering from three subtypes of BCP-ALL, defined by gene rearrangements, i.e., BCR-ABL1 (Philadelphia-positive, t(9;22)), TEL-AML1 (t(12;21)) and TCF3-PBX1 (t(1;19)), using single-cell Raman imaging combined with multivariate statistical analysis. Spectra collected from clinical samples were compared with single-cell spectra of B-cells collected from healthy donors, constituting the control group. We demonstrated that Raman spectra of normal B cells strongly differ from spectra of their malignant counterparts, especially in the intensity of bands, which can be assigned to nucleic acids. We also showed that the identification of leukemia subtypes could be automated with the use of chemometric methods. Results prove the clinical suitability of Raman imaging for the identification of spectroscopic markers characterizing leukemia cells.</description><identifier>ISSN: 2072-6694</identifier><identifier>EISSN: 2072-6694</identifier><identifier>DOI: 10.3390/cancers13215483</identifier><identifier>PMID: 34771646</identifier><language>eng</language><publisher>Basel: MDPI AG</publisher><subject>Acute lymphoblastic leukemia ; AML1 protein ; Bone marrow ; Cancer ; Cell differentiation ; Chemotherapy ; Cloning ; Flow cytometry ; Gene expression ; Gene fusion ; Genomes ; Kinases ; Leukemia ; Leukocytosis ; Lymphatic leukemia ; Lymphocytes ; Lymphocytes B ; Malignancy ; Methods ; Neoplasia ; Patients ; Pediatrics ; Principal components analysis ; Progenitor cells ; Raman spectroscopy ; Risk factors ; Spectrum analysis ; Statistical analysis ; Stem cells</subject><ispartof>Cancers, 2021-10, Vol.13 (21), p.5483</ispartof><rights>2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2021 by the authors. 2021</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c328t-21b8ed802c491ff0e524fd141b3ff713825bd69ee2ffff95aa430ff80ea0329d3</citedby><cites>FETCH-LOGICAL-c328t-21b8ed802c491ff0e524fd141b3ff713825bd69ee2ffff95aa430ff80ea0329d3</cites><orcidid>0000-0002-6235-7270 ; 0000-0001-8826-3144 ; 0000-0002-1422-6639 ; 0000-0002-4585-1525 ; 0000-0002-5014-6011</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8582787/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8582787/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids></links><search><creatorcontrib>Leszczenko, Patrycja</creatorcontrib><creatorcontrib>Borek-Dorosz, Aleksandra</creatorcontrib><creatorcontrib>Nowakowska, Anna Maria</creatorcontrib><creatorcontrib>Adamczyk, Adriana</creatorcontrib><creatorcontrib>Kashyrskaya, Sviatlana</creatorcontrib><creatorcontrib>Jakubowska, Justyna</creatorcontrib><creatorcontrib>Ząbczyńska, Marta</creatorcontrib><creatorcontrib>Pastorczak, Agata</creatorcontrib><creatorcontrib>Ostrowska, Kinga</creatorcontrib><creatorcontrib>Baranska, Malgorzata</creatorcontrib><creatorcontrib>Marzec, Katarzyna Maria</creatorcontrib><creatorcontrib>Majzner, Katarzyna</creatorcontrib><title>Towards Raman-Based Screening of Acute Lymphoblastic Leukemia-Type B (B-ALL) Subtypes</title><title>Cancers</title><description>Acute lymphoblastic leukemia (ALL) is the most common type of malignant neoplasms in the pediatric population. B-cell precursor ALLs (BCP-ALLs) are derived from the progenitors of B lymphocytes. Traditionally, risk factors stratifying therapy in ALL patients included age at diagnosis, initial leukocytosis, and the response to chemotherapy. Currently, treatment intensity is modified according to the presence of specific gene alterations in the leukemic genome. Raman imaging is a promising diagnostic tool, which enables the molecular characterization of cells and differentiation of subtypes of leukemia in clinical samples. This study aimed to characterize and distinguish cells isolated from the bone marrow of patients suffering from three subtypes of BCP-ALL, defined by gene rearrangements, i.e., BCR-ABL1 (Philadelphia-positive, t(9;22)), TEL-AML1 (t(12;21)) and TCF3-PBX1 (t(1;19)), using single-cell Raman imaging combined with multivariate statistical analysis. Spectra collected from clinical samples were compared with single-cell spectra of B-cells collected from healthy donors, constituting the control group. We demonstrated that Raman spectra of normal B cells strongly differ from spectra of their malignant counterparts, especially in the intensity of bands, which can be assigned to nucleic acids. We also showed that the identification of leukemia subtypes could be automated with the use of chemometric methods. Results prove the clinical suitability of Raman imaging for the identification of spectroscopic markers characterizing leukemia cells.</description><subject>Acute lymphoblastic leukemia</subject><subject>AML1 protein</subject><subject>Bone marrow</subject><subject>Cancer</subject><subject>Cell differentiation</subject><subject>Chemotherapy</subject><subject>Cloning</subject><subject>Flow cytometry</subject><subject>Gene expression</subject><subject>Gene fusion</subject><subject>Genomes</subject><subject>Kinases</subject><subject>Leukemia</subject><subject>Leukocytosis</subject><subject>Lymphatic leukemia</subject><subject>Lymphocytes</subject><subject>Lymphocytes B</subject><subject>Malignancy</subject><subject>Methods</subject><subject>Neoplasia</subject><subject>Patients</subject><subject>Pediatrics</subject><subject>Principal components analysis</subject><subject>Progenitor cells</subject><subject>Raman spectroscopy</subject><subject>Risk factors</subject><subject>Spectrum analysis</subject><subject>Statistical analysis</subject><subject>Stem cells</subject><issn>2072-6694</issn><issn>2072-6694</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNpdkc1LxDAQxYMoKqtnrwEveqjmq016EXYXv6Ag6HoOaTpZq22zJq2y_71dXER9lxlmfjxmeAidUHLBeU4urekshEg5o6lQfAcdMiJZkmW52P3VH6DjGF_JKM6pzOQ-OuBCSpqJ7BA9L_ynCVXEj6Y1XTIzESr8ZANAV3dL7B2e2qEHXKzb1YsvGxP72uIChjdoa5Ms1ivAM3w2S6ZFcY6fhrIfJ_EI7TnTRDje1gl6vrlezO-S4uH2fj4tEsuZ6hNGSwWVIsyKnDpHIGXCVVTQkjsnKVcsLassB2BuVJ4aIzhxThEwhLO84hN09e27GsoWKgtdH0yjV6FuTVhrb2r9d9PVL3rpP7RKFZNKjgZnW4Pg3weIvW7raKFpTAd-iJqluRR5mkoyoqf_0Fc_hG58b0NlhKhM8JG6_KZs8DEGcD_HUKI3qel_qfEvsSaJ7Q</recordid><startdate>20211031</startdate><enddate>20211031</enddate><creator>Leszczenko, Patrycja</creator><creator>Borek-Dorosz, Aleksandra</creator><creator>Nowakowska, Anna Maria</creator><creator>Adamczyk, Adriana</creator><creator>Kashyrskaya, Sviatlana</creator><creator>Jakubowska, Justyna</creator><creator>Ząbczyńska, Marta</creator><creator>Pastorczak, Agata</creator><creator>Ostrowska, Kinga</creator><creator>Baranska, Malgorzata</creator><creator>Marzec, Katarzyna Maria</creator><creator>Majzner, Katarzyna</creator><general>MDPI AG</general><general>MDPI</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7T5</scope><scope>7TO</scope><scope>7XB</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M2O</scope><scope>M7P</scope><scope>MBDVC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-6235-7270</orcidid><orcidid>https://orcid.org/0000-0001-8826-3144</orcidid><orcidid>https://orcid.org/0000-0002-1422-6639</orcidid><orcidid>https://orcid.org/0000-0002-4585-1525</orcidid><orcidid>https://orcid.org/0000-0002-5014-6011</orcidid></search><sort><creationdate>20211031</creationdate><title>Towards Raman-Based Screening of Acute Lymphoblastic Leukemia-Type B (B-ALL) Subtypes</title><author>Leszczenko, Patrycja ; Borek-Dorosz, Aleksandra ; Nowakowska, Anna Maria ; Adamczyk, Adriana ; Kashyrskaya, Sviatlana ; Jakubowska, Justyna ; Ząbczyńska, Marta ; Pastorczak, Agata ; Ostrowska, Kinga ; Baranska, Malgorzata ; Marzec, Katarzyna Maria ; Majzner, Katarzyna</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c328t-21b8ed802c491ff0e524fd141b3ff713825bd69ee2ffff95aa430ff80ea0329d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Acute lymphoblastic leukemia</topic><topic>AML1 protein</topic><topic>Bone marrow</topic><topic>Cancer</topic><topic>Cell differentiation</topic><topic>Chemotherapy</topic><topic>Cloning</topic><topic>Flow cytometry</topic><topic>Gene expression</topic><topic>Gene fusion</topic><topic>Genomes</topic><topic>Kinases</topic><topic>Leukemia</topic><topic>Leukocytosis</topic><topic>Lymphatic leukemia</topic><topic>Lymphocytes</topic><topic>Lymphocytes B</topic><topic>Malignancy</topic><topic>Methods</topic><topic>Neoplasia</topic><topic>Patients</topic><topic>Pediatrics</topic><topic>Principal components analysis</topic><topic>Progenitor cells</topic><topic>Raman spectroscopy</topic><topic>Risk factors</topic><topic>Spectrum analysis</topic><topic>Statistical analysis</topic><topic>Stem cells</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Leszczenko, Patrycja</creatorcontrib><creatorcontrib>Borek-Dorosz, Aleksandra</creatorcontrib><creatorcontrib>Nowakowska, Anna Maria</creatorcontrib><creatorcontrib>Adamczyk, Adriana</creatorcontrib><creatorcontrib>Kashyrskaya, Sviatlana</creatorcontrib><creatorcontrib>Jakubowska, Justyna</creatorcontrib><creatorcontrib>Ząbczyńska, Marta</creatorcontrib><creatorcontrib>Pastorczak, Agata</creatorcontrib><creatorcontrib>Ostrowska, Kinga</creatorcontrib><creatorcontrib>Baranska, Malgorzata</creatorcontrib><creatorcontrib>Marzec, Katarzyna Maria</creatorcontrib><creatorcontrib>Majzner, Katarzyna</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Immunology Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Research Library</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Access via ProQuest (Open Access)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Cancers</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Leszczenko, Patrycja</au><au>Borek-Dorosz, Aleksandra</au><au>Nowakowska, Anna Maria</au><au>Adamczyk, Adriana</au><au>Kashyrskaya, Sviatlana</au><au>Jakubowska, Justyna</au><au>Ząbczyńska, Marta</au><au>Pastorczak, Agata</au><au>Ostrowska, Kinga</au><au>Baranska, Malgorzata</au><au>Marzec, Katarzyna Maria</au><au>Majzner, Katarzyna</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Towards Raman-Based Screening of Acute Lymphoblastic Leukemia-Type B (B-ALL) Subtypes</atitle><jtitle>Cancers</jtitle><date>2021-10-31</date><risdate>2021</risdate><volume>13</volume><issue>21</issue><spage>5483</spage><pages>5483-</pages><issn>2072-6694</issn><eissn>2072-6694</eissn><abstract>Acute lymphoblastic leukemia (ALL) is the most common type of malignant neoplasms in the pediatric population. B-cell precursor ALLs (BCP-ALLs) are derived from the progenitors of B lymphocytes. Traditionally, risk factors stratifying therapy in ALL patients included age at diagnosis, initial leukocytosis, and the response to chemotherapy. Currently, treatment intensity is modified according to the presence of specific gene alterations in the leukemic genome. Raman imaging is a promising diagnostic tool, which enables the molecular characterization of cells and differentiation of subtypes of leukemia in clinical samples. This study aimed to characterize and distinguish cells isolated from the bone marrow of patients suffering from three subtypes of BCP-ALL, defined by gene rearrangements, i.e., BCR-ABL1 (Philadelphia-positive, t(9;22)), TEL-AML1 (t(12;21)) and TCF3-PBX1 (t(1;19)), using single-cell Raman imaging combined with multivariate statistical analysis. Spectra collected from clinical samples were compared with single-cell spectra of B-cells collected from healthy donors, constituting the control group. We demonstrated that Raman spectra of normal B cells strongly differ from spectra of their malignant counterparts, especially in the intensity of bands, which can be assigned to nucleic acids. We also showed that the identification of leukemia subtypes could be automated with the use of chemometric methods. 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subjects | Acute lymphoblastic leukemia AML1 protein Bone marrow Cancer Cell differentiation Chemotherapy Cloning Flow cytometry Gene expression Gene fusion Genomes Kinases Leukemia Leukocytosis Lymphatic leukemia Lymphocytes Lymphocytes B Malignancy Methods Neoplasia Patients Pediatrics Principal components analysis Progenitor cells Raman spectroscopy Risk factors Spectrum analysis Statistical analysis Stem cells |
title | Towards Raman-Based Screening of Acute Lymphoblastic Leukemia-Type B (B-ALL) Subtypes |
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