Non-contact screening system based for COVID-19 on XGBoost and logistic regression
The coronavirus disease (COVID-19) effected a global health crisis in 2019, 2020, and beyond. Currently, methods such as temperature detection, clinical manifestations, and nucleic acid testing are used to comprehensively determine whether patients are infected with the severe acute respiratory synd...
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creator | Dong, Chunjiao Qiao, Yixian Shang, Chunheng Liao, Xiwen Yuan, Xiaoning Cheng, Qin Li, Yuxuan Zhang, Jianan Wang, Yunfeng Chen, Yahong Ge, Qinggang Bao, Yurong |
description | The coronavirus disease (COVID-19) effected a global health crisis in 2019, 2020, and beyond. Currently, methods such as temperature detection, clinical manifestations, and nucleic acid testing are used to comprehensively determine whether patients are infected with the severe acute respiratory syndrome coronavirus 2. However, during the peak period of COVID-19 outbreaks and in underdeveloped regions, medical staff and high-tech detection equipment were limited, resulting in the continued spread of the disease. Thus, a more portable, cost-effective, and automated auxiliary screening method is necessary.
We aim to apply a machine learning algorithm and non-contact monitoring system to automatically screen potential COVID-19 patients.
We used impulse-radio ultra-wideband radar to detect respiration, heart rate, body movement, sleep quality, and various other physiological indicators. We collected 140 radar monitoring data from 23 COVID-19 patients in Wuhan Tongji Hospital and compared them with 144 radar monitoring data from healthy controls. Then, the XGBoost and logistic regression (XGBoost + LR) algorithms were used to classify the data according to patients and healthy subjects.
The XGBoost + LR algorithm demonstrated excellent discrimination (precision = 92.5%, recall rate = 96.8%, AUC = 98.0%), outperforming other single machine learning algorithms. Furthermore, the SHAP value indicates that the number of apneas during REM, mean heart rate, and some sleep parameters are important features for classification.
The XGBoost + LR-based screening system can accurately predict COVID-19 patients and can be applied in hotels, nursing homes, wards, and other crowded locations to effectively help medical staff.
•COVID-19 diagnosis is difficult in underdeveloped and understaffed areas.•Physiological indicators e.g., heart rate and sleep quality were measured.•XGBoost and logic regression were combined to classify patient data.•Achieved precision = 92.5%, recall rate = 96.8%, and AUC = 98.0%.•Apneas during REM, mean heart rate, and sleep parameters are key features. |
doi_str_mv | 10.1016/j.compbiomed.2021.105003 |
format | Article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8563520</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0010482521007976</els_id><sourcerecordid>2598078021</sourcerecordid><originalsourceid>FETCH-LOGICAL-c573t-2424e555fc65ba3a6ee68f60a592954f4fc87557909d0d837995aaf52b8449603</originalsourceid><addsrcrecordid>eNqFkU1vEzEQhi0EomnhLyBLXLhsGH_t2hckGqCtVFEJAeJmeb2zwVHWDvamUv89jlLKx4WTpfEz78y8LyGUwZIBa19vlj5Nuz6kCYclB85qWQGIR2TBdGcaUEI-JgsABo3UXJ2Q01I2ACBBwFNyImSnOWOwIJ8-ptj4FGfnZ1p8Rowhrmm5KzNOtHcFBzqmTFc3X6_eNczQFOm3i_OUykxdHOg2rUOZg6cZ1xlLCSk-I09Gty34_P49I18-vP-8umyuby6uVm-vG686MTdccolKqdG3qnfCtYitHltwynCj5ChHrzulOgNmgEGLzhjl3Kh4r6U0LYgz8uaou9v31QePcc5ua3c5TC7f2eSC_fsnhu92nW6tVq1Q_CDw6l4gpx97LLOdQvG43bqIaV8sV0ZDp6u9FX35D7pJ-xzreZa3XFTQtF2l9JHyOZWScXxYhoE9BGc39ndw9hCcPQZXW1_8ecxD46-kKnB-BLBaehsw2-IDRo9DyOhnO6Tw_yk_AWM3rXA</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2623598967</pqid></control><display><type>article</type><title>Non-contact screening system based for COVID-19 on XGBoost and logistic regression</title><source>MEDLINE</source><source>Access via ScienceDirect (Elsevier)</source><source>ProQuest Central UK/Ireland</source><creator>Dong, Chunjiao ; Qiao, Yixian ; Shang, Chunheng ; Liao, Xiwen ; Yuan, Xiaoning ; Cheng, Qin ; Li, Yuxuan ; Zhang, Jianan ; Wang, Yunfeng ; Chen, Yahong ; Ge, Qinggang ; Bao, Yurong</creator><creatorcontrib>Dong, Chunjiao ; Qiao, Yixian ; Shang, Chunheng ; Liao, Xiwen ; Yuan, Xiaoning ; Cheng, Qin ; Li, Yuxuan ; Zhang, Jianan ; Wang, Yunfeng ; Chen, Yahong ; Ge, Qinggang ; Bao, Yurong</creatorcontrib><description>The coronavirus disease (COVID-19) effected a global health crisis in 2019, 2020, and beyond. Currently, methods such as temperature detection, clinical manifestations, and nucleic acid testing are used to comprehensively determine whether patients are infected with the severe acute respiratory syndrome coronavirus 2. However, during the peak period of COVID-19 outbreaks and in underdeveloped regions, medical staff and high-tech detection equipment were limited, resulting in the continued spread of the disease. Thus, a more portable, cost-effective, and automated auxiliary screening method is necessary.
We aim to apply a machine learning algorithm and non-contact monitoring system to automatically screen potential COVID-19 patients.
We used impulse-radio ultra-wideband radar to detect respiration, heart rate, body movement, sleep quality, and various other physiological indicators. We collected 140 radar monitoring data from 23 COVID-19 patients in Wuhan Tongji Hospital and compared them with 144 radar monitoring data from healthy controls. Then, the XGBoost and logistic regression (XGBoost + LR) algorithms were used to classify the data according to patients and healthy subjects.
The XGBoost + LR algorithm demonstrated excellent discrimination (precision = 92.5%, recall rate = 96.8%, AUC = 98.0%), outperforming other single machine learning algorithms. Furthermore, the SHAP value indicates that the number of apneas during REM, mean heart rate, and some sleep parameters are important features for classification.
The XGBoost + LR-based screening system can accurately predict COVID-19 patients and can be applied in hotels, nursing homes, wards, and other crowded locations to effectively help medical staff.
•COVID-19 diagnosis is difficult in underdeveloped and understaffed areas.•Physiological indicators e.g., heart rate and sleep quality were measured.•XGBoost and logic regression were combined to classify patient data.•Achieved precision = 92.5%, recall rate = 96.8%, and AUC = 98.0%.•Apneas during REM, mean heart rate, and sleep parameters are key features.</description><identifier>ISSN: 0010-4825</identifier><identifier>EISSN: 1879-0534</identifier><identifier>DOI: 10.1016/j.compbiomed.2021.105003</identifier><identifier>PMID: 34782110</identifier><language>eng</language><publisher>United States: Elsevier Ltd</publisher><subject>Algorithms ; Coronaviruses ; COVID-19 ; Global health ; Heart rate ; Hotels ; Humans ; Infectious diseases ; Learning algorithms ; Logistic Models ; Logistic regression ; Machine learning ; Medical personnel ; Medical research ; Monitoring ; Monitoring, Physiologic ; Non-contact vital signs ; Nucleic acids ; Nursing homes ; Patients ; Public health ; Radar ; Radar data ; Respiration ; Respiratory diseases ; SARS-CoV-2 ; Screening system ; Severe acute respiratory syndrome ; Severe acute respiratory syndrome coronavirus 2 ; Sleep ; Telemedicine ; Ultrawideband radar ; Viral diseases ; XGBoost</subject><ispartof>Computers in biology and medicine, 2022-02, Vol.141, p.105003-105003, Article 105003</ispartof><rights>2021 Elsevier Ltd</rights><rights>Copyright © 2021 Elsevier Ltd. All rights reserved.</rights><rights>2021. Elsevier Ltd</rights><rights>2021 Elsevier Ltd. All rights reserved. 2021 Elsevier Ltd</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c573t-2424e555fc65ba3a6ee68f60a592954f4fc87557909d0d837995aaf52b8449603</citedby><cites>FETCH-LOGICAL-c573t-2424e555fc65ba3a6ee68f60a592954f4fc87557909d0d837995aaf52b8449603</cites><orcidid>0000-0001-9141-4783 ; 0000-0001-6892-3774</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.proquest.com/docview/2623598967?pq-origsite=primo$$EHTML$$P50$$Gproquest$$H</linktohtml><link.rule.ids>230,314,780,784,885,3550,27924,27925,45995,64385,64387,64389,72469</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34782110$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Dong, Chunjiao</creatorcontrib><creatorcontrib>Qiao, Yixian</creatorcontrib><creatorcontrib>Shang, Chunheng</creatorcontrib><creatorcontrib>Liao, Xiwen</creatorcontrib><creatorcontrib>Yuan, Xiaoning</creatorcontrib><creatorcontrib>Cheng, Qin</creatorcontrib><creatorcontrib>Li, Yuxuan</creatorcontrib><creatorcontrib>Zhang, Jianan</creatorcontrib><creatorcontrib>Wang, Yunfeng</creatorcontrib><creatorcontrib>Chen, Yahong</creatorcontrib><creatorcontrib>Ge, Qinggang</creatorcontrib><creatorcontrib>Bao, Yurong</creatorcontrib><title>Non-contact screening system based for COVID-19 on XGBoost and logistic regression</title><title>Computers in biology and medicine</title><addtitle>Comput Biol Med</addtitle><description>The coronavirus disease (COVID-19) effected a global health crisis in 2019, 2020, and beyond. Currently, methods such as temperature detection, clinical manifestations, and nucleic acid testing are used to comprehensively determine whether patients are infected with the severe acute respiratory syndrome coronavirus 2. However, during the peak period of COVID-19 outbreaks and in underdeveloped regions, medical staff and high-tech detection equipment were limited, resulting in the continued spread of the disease. Thus, a more portable, cost-effective, and automated auxiliary screening method is necessary.
We aim to apply a machine learning algorithm and non-contact monitoring system to automatically screen potential COVID-19 patients.
We used impulse-radio ultra-wideband radar to detect respiration, heart rate, body movement, sleep quality, and various other physiological indicators. We collected 140 radar monitoring data from 23 COVID-19 patients in Wuhan Tongji Hospital and compared them with 144 radar monitoring data from healthy controls. Then, the XGBoost and logistic regression (XGBoost + LR) algorithms were used to classify the data according to patients and healthy subjects.
The XGBoost + LR algorithm demonstrated excellent discrimination (precision = 92.5%, recall rate = 96.8%, AUC = 98.0%), outperforming other single machine learning algorithms. Furthermore, the SHAP value indicates that the number of apneas during REM, mean heart rate, and some sleep parameters are important features for classification.
The XGBoost + LR-based screening system can accurately predict COVID-19 patients and can be applied in hotels, nursing homes, wards, and other crowded locations to effectively help medical staff.
•COVID-19 diagnosis is difficult in underdeveloped and understaffed areas.•Physiological indicators e.g., heart rate and sleep quality were measured.•XGBoost and logic regression were combined to classify patient data.•Achieved precision = 92.5%, recall rate = 96.8%, and AUC = 98.0%.•Apneas during REM, mean heart rate, and sleep parameters are key features.</description><subject>Algorithms</subject><subject>Coronaviruses</subject><subject>COVID-19</subject><subject>Global health</subject><subject>Heart rate</subject><subject>Hotels</subject><subject>Humans</subject><subject>Infectious diseases</subject><subject>Learning algorithms</subject><subject>Logistic Models</subject><subject>Logistic regression</subject><subject>Machine learning</subject><subject>Medical personnel</subject><subject>Medical research</subject><subject>Monitoring</subject><subject>Monitoring, Physiologic</subject><subject>Non-contact vital signs</subject><subject>Nucleic acids</subject><subject>Nursing homes</subject><subject>Patients</subject><subject>Public health</subject><subject>Radar</subject><subject>Radar data</subject><subject>Respiration</subject><subject>Respiratory diseases</subject><subject>SARS-CoV-2</subject><subject>Screening system</subject><subject>Severe acute respiratory syndrome</subject><subject>Severe acute respiratory syndrome coronavirus 2</subject><subject>Sleep</subject><subject>Telemedicine</subject><subject>Ultrawideband radar</subject><subject>Viral 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screening system based for COVID-19 on XGBoost and logistic regression</title><author>Dong, Chunjiao ; Qiao, Yixian ; Shang, Chunheng ; Liao, Xiwen ; Yuan, Xiaoning ; Cheng, Qin ; Li, Yuxuan ; Zhang, Jianan ; Wang, Yunfeng ; Chen, Yahong ; Ge, Qinggang ; Bao, Yurong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c573t-2424e555fc65ba3a6ee68f60a592954f4fc87557909d0d837995aaf52b8449603</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Algorithms</topic><topic>Coronaviruses</topic><topic>COVID-19</topic><topic>Global health</topic><topic>Heart rate</topic><topic>Hotels</topic><topic>Humans</topic><topic>Infectious diseases</topic><topic>Learning algorithms</topic><topic>Logistic Models</topic><topic>Logistic regression</topic><topic>Machine learning</topic><topic>Medical personnel</topic><topic>Medical research</topic><topic>Monitoring</topic><topic>Monitoring, Physiologic</topic><topic>Non-contact vital signs</topic><topic>Nucleic acids</topic><topic>Nursing homes</topic><topic>Patients</topic><topic>Public health</topic><topic>Radar</topic><topic>Radar data</topic><topic>Respiration</topic><topic>Respiratory diseases</topic><topic>SARS-CoV-2</topic><topic>Screening system</topic><topic>Severe acute respiratory syndrome</topic><topic>Severe acute respiratory syndrome coronavirus 2</topic><topic>Sleep</topic><topic>Telemedicine</topic><topic>Ultrawideband radar</topic><topic>Viral diseases</topic><topic>XGBoost</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Dong, Chunjiao</creatorcontrib><creatorcontrib>Qiao, Yixian</creatorcontrib><creatorcontrib>Shang, Chunheng</creatorcontrib><creatorcontrib>Liao, Xiwen</creatorcontrib><creatorcontrib>Yuan, Xiaoning</creatorcontrib><creatorcontrib>Cheng, Qin</creatorcontrib><creatorcontrib>Li, Yuxuan</creatorcontrib><creatorcontrib>Zhang, 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Yurong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Non-contact screening system based for COVID-19 on XGBoost and logistic regression</atitle><jtitle>Computers in biology and medicine</jtitle><addtitle>Comput Biol Med</addtitle><date>2022-02-01</date><risdate>2022</risdate><volume>141</volume><spage>105003</spage><epage>105003</epage><pages>105003-105003</pages><artnum>105003</artnum><issn>0010-4825</issn><eissn>1879-0534</eissn><abstract>The coronavirus disease (COVID-19) effected a global health crisis in 2019, 2020, and beyond. Currently, methods such as temperature detection, clinical manifestations, and nucleic acid testing are used to comprehensively determine whether patients are infected with the severe acute respiratory syndrome coronavirus 2. However, during the peak period of COVID-19 outbreaks and in underdeveloped regions, medical staff and high-tech detection equipment were limited, resulting in the continued spread of the disease. Thus, a more portable, cost-effective, and automated auxiliary screening method is necessary.
We aim to apply a machine learning algorithm and non-contact monitoring system to automatically screen potential COVID-19 patients.
We used impulse-radio ultra-wideband radar to detect respiration, heart rate, body movement, sleep quality, and various other physiological indicators. We collected 140 radar monitoring data from 23 COVID-19 patients in Wuhan Tongji Hospital and compared them with 144 radar monitoring data from healthy controls. Then, the XGBoost and logistic regression (XGBoost + LR) algorithms were used to classify the data according to patients and healthy subjects.
The XGBoost + LR algorithm demonstrated excellent discrimination (precision = 92.5%, recall rate = 96.8%, AUC = 98.0%), outperforming other single machine learning algorithms. Furthermore, the SHAP value indicates that the number of apneas during REM, mean heart rate, and some sleep parameters are important features for classification.
The XGBoost + LR-based screening system can accurately predict COVID-19 patients and can be applied in hotels, nursing homes, wards, and other crowded locations to effectively help medical staff.
•COVID-19 diagnosis is difficult in underdeveloped and understaffed areas.•Physiological indicators e.g., heart rate and sleep quality were measured.•XGBoost and logic regression were combined to classify patient data.•Achieved precision = 92.5%, recall rate = 96.8%, and AUC = 98.0%.•Apneas during REM, mean heart rate, and sleep parameters are key features.</abstract><cop>United States</cop><pub>Elsevier Ltd</pub><pmid>34782110</pmid><doi>10.1016/j.compbiomed.2021.105003</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0001-9141-4783</orcidid><orcidid>https://orcid.org/0000-0001-6892-3774</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Algorithms Coronaviruses COVID-19 Global health Heart rate Hotels Humans Infectious diseases Learning algorithms Logistic Models Logistic regression Machine learning Medical personnel Medical research Monitoring Monitoring, Physiologic Non-contact vital signs Nucleic acids Nursing homes Patients Public health Radar Radar data Respiration Respiratory diseases SARS-CoV-2 Screening system Severe acute respiratory syndrome Severe acute respiratory syndrome coronavirus 2 Sleep Telemedicine Ultrawideband radar Viral diseases XGBoost |
title | Non-contact screening system based for COVID-19 on XGBoost and logistic regression |
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