A Meta-Analytical Investigation of the Gap between Measured and Predicted Inter-Population Genetic Diversity in Species of High Conservation Concern-The Case of the Critically Endangered European Mink Mustela lutreola L., 1761
Although properly designed sampling in population genetic studies is of key importance for planning evidence-informed conservation measures, sampling strategies are rarely discussed. This is the case for the European mink , a critically endangered species. In order to address this problem, a meta-an...
Gespeichert in:
| Veröffentlicht in: | Genes 2021-09, Vol.12 (10), p.1555 |
|---|---|
| Hauptverfasser: | , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | |
|---|---|
| container_issue | 10 |
| container_start_page | 1555 |
| container_title | Genes |
| container_volume | 12 |
| creator | Skorupski, Jakub Michaux, Johan Śmietana, Przemysław |
| description | Although properly designed sampling in population genetic studies is of key importance for planning evidence-informed conservation measures, sampling strategies are rarely discussed. This is the case for the European mink
, a critically endangered species. In order to address this problem, a meta-analysis aiming to examine the completeness of mtDNA haplotype sampling in recent studies of
inter-population genetic diversity was conducted. The analysis was performed using the sample-size-based rarefaction and extrapolation sampling curve method for three populations-the Northeastern (Russia, Belarus and Estonia), the Western (France and Spain), and the Southeastern (Romania). The extrapolated values of the Shannon-Wiener index were determined, assuming full sample coverage. The gap between the measured and predicted inter-population genetic diversity was estimated, indicating that the identified level of sample coverage was the lowest for the NE population (87%), followed by the SE population (96%) and the W population (99%). A guide for sampling design and accounting for sampling uncertainty in future population genetic studies on European mink is provided. The relatively low sample coverage for the Russian population clearly indicates an urgent need to take conservation measures for European mink in this country. |
| doi_str_mv | 10.3390/genes12101555 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8535868</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2584790653</sourcerecordid><originalsourceid>FETCH-LOGICAL-c449t-e199cf390b4acf5fd6d6d170cf3b9362ece8347d413ef546422ea6d14b636eb53</originalsourceid><addsrcrecordid>eNpdUk1v1DAQjRCIVqVHrsgSF5BIcfyRjwvSall2V9qKSpSz5SSTrEtqp7YTtH-XX4Kzaau29sEz9ntvnu2JovcJvqC0wF9b0OASkuCEc_4qOiU4ozFjhL9-Ep9E587d4DAYJhjzt9EJZWmOC45Po38LdAlexgstu4NXlezQVo_gvGqlV0Yj0yC_B7SWPSrB_wXQgSDdYKFGUtfoKgSq8iHbag82vjL90M3UdXAXJNF3NYJ1yh-Q0uhXD5UCN-luVLtHS6Md2HFmhKQCq-PrUHEpHTxUX1p19NYd0ErXUrcwlV8N1vQggyGl_6DLwXnoJOoGb8GEYHfxBSVZmryL3jSyc3B-v55Fv3-srpebePdzvV0udnHFWOFjSIqiasKrlkxWDW_qNMwkw2GvLGhKoIKcsqxmCYWGs5QRAjIgWJnSFEpOz6Jvs24_lLdQV6C9lZ3orbqV9iCMVOL5iVZ70ZpR5JzyPM2DAJ0FOgUtCGNLJUZyJB7joWuFrEQJgpA0FyTNMpIE1ueZtX9RbLPYiWkPU44pKeg4YT_dW7Tmbgi_LG6Vq6DrpAYzOEF4zrICp5wG6McX0Bsz2NAlM4oWSVpMd45nVGWNcxaaRwcJFlOLimctGvAfnr7RI_qhIel_pNbkhA</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2584391695</pqid></control><display><type>article</type><title>A Meta-Analytical Investigation of the Gap between Measured and Predicted Inter-Population Genetic Diversity in Species of High Conservation Concern-The Case of the Critically Endangered European Mink Mustela lutreola L., 1761</title><source>MDPI - Multidisciplinary Digital Publishing Institute</source><source>MEDLINE</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><source>PubMed Central Open Access</source><creator>Skorupski, Jakub ; Michaux, Johan ; Śmietana, Przemysław</creator><creatorcontrib>Skorupski, Jakub ; Michaux, Johan ; Śmietana, Przemysław</creatorcontrib><description>Although properly designed sampling in population genetic studies is of key importance for planning evidence-informed conservation measures, sampling strategies are rarely discussed. This is the case for the European mink
, a critically endangered species. In order to address this problem, a meta-analysis aiming to examine the completeness of mtDNA haplotype sampling in recent studies of
inter-population genetic diversity was conducted. The analysis was performed using the sample-size-based rarefaction and extrapolation sampling curve method for three populations-the Northeastern (Russia, Belarus and Estonia), the Western (France and Spain), and the Southeastern (Romania). The extrapolated values of the Shannon-Wiener index were determined, assuming full sample coverage. The gap between the measured and predicted inter-population genetic diversity was estimated, indicating that the identified level of sample coverage was the lowest for the NE population (87%), followed by the SE population (96%) and the W population (99%). A guide for sampling design and accounting for sampling uncertainty in future population genetic studies on European mink is provided. The relatively low sample coverage for the Russian population clearly indicates an urgent need to take conservation measures for European mink in this country.</description><identifier>ISSN: 2073-4425</identifier><identifier>EISSN: 2073-4425</identifier><identifier>DOI: 10.3390/genes12101555</identifier><identifier>PMID: 34680950</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Animals ; Conservation ; DNA, Mitochondrial - genetics ; Ecosystem ; Endangered & extinct species ; Endangered Species ; Genetic analysis ; Genetic diversity ; Haplotypes ; Life Sciences ; Meta-analysis ; Mink - genetics ; Mitochondrial DNA ; Models, Genetic ; Mustela lutreola ; Polymorphism, Genetic ; Population ; Population genetics ; Population studies ; Sample size ; Sampling ; Sciences du vivant ; Wildlife conservation ; Zoologie ; Zoology</subject><ispartof>Genes, 2021-09, Vol.12 (10), p.1555</ispartof><rights>2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>Attribution</rights><rights>2021 by the authors. 2021</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c449t-e199cf390b4acf5fd6d6d170cf3b9362ece8347d413ef546422ea6d14b636eb53</cites><orcidid>0000-0001-6899-701X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8535868/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8535868/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34680950$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.inrae.fr/hal-03503293$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Skorupski, Jakub</creatorcontrib><creatorcontrib>Michaux, Johan</creatorcontrib><creatorcontrib>Śmietana, Przemysław</creatorcontrib><title>A Meta-Analytical Investigation of the Gap between Measured and Predicted Inter-Population Genetic Diversity in Species of High Conservation Concern-The Case of the Critically Endangered European Mink Mustela lutreola L., 1761</title><title>Genes</title><addtitle>Genes (Basel)</addtitle><description>Although properly designed sampling in population genetic studies is of key importance for planning evidence-informed conservation measures, sampling strategies are rarely discussed. This is the case for the European mink
, a critically endangered species. In order to address this problem, a meta-analysis aiming to examine the completeness of mtDNA haplotype sampling in recent studies of
inter-population genetic diversity was conducted. The analysis was performed using the sample-size-based rarefaction and extrapolation sampling curve method for three populations-the Northeastern (Russia, Belarus and Estonia), the Western (France and Spain), and the Southeastern (Romania). The extrapolated values of the Shannon-Wiener index were determined, assuming full sample coverage. The gap between the measured and predicted inter-population genetic diversity was estimated, indicating that the identified level of sample coverage was the lowest for the NE population (87%), followed by the SE population (96%) and the W population (99%). A guide for sampling design and accounting for sampling uncertainty in future population genetic studies on European mink is provided. The relatively low sample coverage for the Russian population clearly indicates an urgent need to take conservation measures for European mink in this country.</description><subject>Animals</subject><subject>Conservation</subject><subject>DNA, Mitochondrial - genetics</subject><subject>Ecosystem</subject><subject>Endangered & extinct species</subject><subject>Endangered Species</subject><subject>Genetic analysis</subject><subject>Genetic diversity</subject><subject>Haplotypes</subject><subject>Life Sciences</subject><subject>Meta-analysis</subject><subject>Mink - genetics</subject><subject>Mitochondrial DNA</subject><subject>Models, Genetic</subject><subject>Mustela lutreola</subject><subject>Polymorphism, Genetic</subject><subject>Population</subject><subject>Population genetics</subject><subject>Population studies</subject><subject>Sample size</subject><subject>Sampling</subject><subject>Sciences du vivant</subject><subject>Wildlife conservation</subject><subject>Zoologie</subject><subject>Zoology</subject><issn>2073-4425</issn><issn>2073-4425</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNpdUk1v1DAQjRCIVqVHrsgSF5BIcfyRjwvSall2V9qKSpSz5SSTrEtqp7YTtH-XX4Kzaau29sEz9ntvnu2JovcJvqC0wF9b0OASkuCEc_4qOiU4ozFjhL9-Ep9E587d4DAYJhjzt9EJZWmOC45Po38LdAlexgstu4NXlezQVo_gvGqlV0Yj0yC_B7SWPSrB_wXQgSDdYKFGUtfoKgSq8iHbag82vjL90M3UdXAXJNF3NYJ1yh-Q0uhXD5UCN-luVLtHS6Md2HFmhKQCq-PrUHEpHTxUX1p19NYd0ErXUrcwlV8N1vQggyGl_6DLwXnoJOoGb8GEYHfxBSVZmryL3jSyc3B-v55Fv3-srpebePdzvV0udnHFWOFjSIqiasKrlkxWDW_qNMwkw2GvLGhKoIKcsqxmCYWGs5QRAjIgWJnSFEpOz6Jvs24_lLdQV6C9lZ3orbqV9iCMVOL5iVZ70ZpR5JzyPM2DAJ0FOgUtCGNLJUZyJB7joWuFrEQJgpA0FyTNMpIE1ueZtX9RbLPYiWkPU44pKeg4YT_dW7Tmbgi_LG6Vq6DrpAYzOEF4zrICp5wG6McX0Bsz2NAlM4oWSVpMd45nVGWNcxaaRwcJFlOLimctGvAfnr7RI_qhIel_pNbkhA</recordid><startdate>20210929</startdate><enddate>20210929</enddate><creator>Skorupski, Jakub</creator><creator>Michaux, Johan</creator><creator>Śmietana, Przemysław</creator><general>MDPI AG</general><general>MDPI</general><general>Multidisciplinary Digital Publishing Institute (MDPI)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>1XC</scope><scope>VOOES</scope><scope>Q33</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0001-6899-701X</orcidid></search><sort><creationdate>20210929</creationdate><title>A Meta-Analytical Investigation of the Gap between Measured and Predicted Inter-Population Genetic Diversity in Species of High Conservation Concern-The Case of the Critically Endangered European Mink Mustela lutreola L., 1761</title><author>Skorupski, Jakub ; Michaux, Johan ; Śmietana, Przemysław</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c449t-e199cf390b4acf5fd6d6d170cf3b9362ece8347d413ef546422ea6d14b636eb53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Animals</topic><topic>Conservation</topic><topic>DNA, Mitochondrial - genetics</topic><topic>Ecosystem</topic><topic>Endangered & extinct species</topic><topic>Endangered Species</topic><topic>Genetic analysis</topic><topic>Genetic diversity</topic><topic>Haplotypes</topic><topic>Life Sciences</topic><topic>Meta-analysis</topic><topic>Mink - genetics</topic><topic>Mitochondrial DNA</topic><topic>Models, Genetic</topic><topic>Mustela lutreola</topic><topic>Polymorphism, Genetic</topic><topic>Population</topic><topic>Population genetics</topic><topic>Population studies</topic><topic>Sample size</topic><topic>Sampling</topic><topic>Sciences du vivant</topic><topic>Wildlife conservation</topic><topic>Zoologie</topic><topic>Zoology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Skorupski, Jakub</creatorcontrib><creatorcontrib>Michaux, Johan</creatorcontrib><creatorcontrib>Śmietana, Przemysław</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><collection>Hyper Article en Ligne (HAL) (Open Access)</collection><collection>Université de Liège - Open Repository and Bibliography (ORBI)</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genes</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Skorupski, Jakub</au><au>Michaux, Johan</au><au>Śmietana, Przemysław</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A Meta-Analytical Investigation of the Gap between Measured and Predicted Inter-Population Genetic Diversity in Species of High Conservation Concern-The Case of the Critically Endangered European Mink Mustela lutreola L., 1761</atitle><jtitle>Genes</jtitle><addtitle>Genes (Basel)</addtitle><date>2021-09-29</date><risdate>2021</risdate><volume>12</volume><issue>10</issue><spage>1555</spage><pages>1555-</pages><issn>2073-4425</issn><eissn>2073-4425</eissn><abstract>Although properly designed sampling in population genetic studies is of key importance for planning evidence-informed conservation measures, sampling strategies are rarely discussed. This is the case for the European mink
, a critically endangered species. In order to address this problem, a meta-analysis aiming to examine the completeness of mtDNA haplotype sampling in recent studies of
inter-population genetic diversity was conducted. The analysis was performed using the sample-size-based rarefaction and extrapolation sampling curve method for three populations-the Northeastern (Russia, Belarus and Estonia), the Western (France and Spain), and the Southeastern (Romania). The extrapolated values of the Shannon-Wiener index were determined, assuming full sample coverage. The gap between the measured and predicted inter-population genetic diversity was estimated, indicating that the identified level of sample coverage was the lowest for the NE population (87%), followed by the SE population (96%) and the W population (99%). A guide for sampling design and accounting for sampling uncertainty in future population genetic studies on European mink is provided. The relatively low sample coverage for the Russian population clearly indicates an urgent need to take conservation measures for European mink in this country.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>34680950</pmid><doi>10.3390/genes12101555</doi><orcidid>https://orcid.org/0000-0001-6899-701X</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 2073-4425 |
| ispartof | Genes, 2021-09, Vol.12 (10), p.1555 |
| issn | 2073-4425 2073-4425 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8535868 |
| source | MDPI - Multidisciplinary Digital Publishing Institute; MEDLINE; EZB-FREE-00999 freely available EZB journals; PubMed Central; PubMed Central Open Access |
| subjects | Animals Conservation DNA, Mitochondrial - genetics Ecosystem Endangered & extinct species Endangered Species Genetic analysis Genetic diversity Haplotypes Life Sciences Meta-analysis Mink - genetics Mitochondrial DNA Models, Genetic Mustela lutreola Polymorphism, Genetic Population Population genetics Population studies Sample size Sampling Sciences du vivant Wildlife conservation Zoologie Zoology |
| title | A Meta-Analytical Investigation of the Gap between Measured and Predicted Inter-Population Genetic Diversity in Species of High Conservation Concern-The Case of the Critically Endangered European Mink Mustela lutreola L., 1761 |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-30T15%3A57%3A10IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=A%20Meta-Analytical%20Investigation%20of%20the%20Gap%20between%20Measured%20and%20Predicted%20Inter-Population%20Genetic%20Diversity%20in%20Species%20of%20High%20Conservation%20Concern-The%20Case%20of%20the%20Critically%20Endangered%20European%20Mink%20Mustela%20lutreola%20L.,%201761&rft.jtitle=Genes&rft.au=Skorupski,%20Jakub&rft.date=2021-09-29&rft.volume=12&rft.issue=10&rft.spage=1555&rft.pages=1555-&rft.issn=2073-4425&rft.eissn=2073-4425&rft_id=info:doi/10.3390/genes12101555&rft_dat=%3Cproquest_pubme%3E2584790653%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2584391695&rft_id=info:pmid/34680950&rfr_iscdi=true |