Ribosome dynamics and mRNA turnover, a complex relationship under constant cellular scrutiny
Eukaryotic gene expression is closely regulated by translation and turnover of mRNAs. Recent advances highlight the importance of translation in the control of mRNA degradation, both for aberrant and apparently normal mRNAs. During translation, the information contained in mRNAs is decoded by riboso...
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description | Eukaryotic gene expression is closely regulated by translation and turnover of mRNAs. Recent advances highlight the importance of translation in the control of mRNA degradation, both for aberrant and apparently normal mRNAs. During translation, the information contained in mRNAs is decoded by ribosomes, one codon at a time, and tRNAs, by specifically recognizing codons, translate the nucleotide code into amino acids. Such a decoding step does not process regularly, with various obstacles that can hinder ribosome progression, then leading to ribosome stalling or collisions. The progression of ribosomes is constantly monitored by the cell which has evolved several translation‐dependent mRNA surveillance pathways, including nonsense‐mediated decay (NMD), no‐go decay (NGD), and non‐stop decay (NSD), to degrade certain problematic mRNAs and the incomplete protein products. Recent progress in sequencing and ribosome profiling has made it possible to discover new mechanisms controlling ribosome dynamics, with numerous crosstalks between translation and mRNA decay. We discuss here various translation features critical for mRNA decay, with particular focus on current insights from the complexity of the genetic code and also the emerging role for the ribosome as a regulatory hub orchestrating mRNA decay, quality control, and stress signaling. Even if the interplay between mRNA translation and degradation is no longer to be demonstrated, a better understanding of their precise coordination is worthy of further investigation.
This article is categorized under:
RNA Turnover and Surveillance > Regulation of RNA Stability
Translation > Translation Regulation
RNA Interactions with Proteins and Other Molecules > RNA‐Protein Complexes
The process of mRNA translation is tightly monitored by eukaryotic cells to ensure the correct progression of ribosomes. A multitude of different pathways have evolved to mediate co‐translational mRNA degradation in order to restrict expression of aberrant mRNAs but also that of functional mRNAs. |
doi_str_mv | 10.1002/wrna.1658 |
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This article is categorized under:
RNA Turnover and Surveillance > Regulation of RNA Stability
Translation > Translation Regulation
RNA Interactions with Proteins and Other Molecules > RNA‐Protein Complexes
The process of mRNA translation is tightly monitored by eukaryotic cells to ensure the correct progression of ribosomes. A multitude of different pathways have evolved to mediate co‐translational mRNA degradation in order to restrict expression of aberrant mRNAs but also that of functional mRNAs.</description><identifier>ISSN: 1757-7004</identifier><identifier>EISSN: 1757-7012</identifier><identifier>DOI: 10.1002/wrna.1658</identifier><identifier>PMID: 33949788</identifier><language>eng</language><publisher>Hoboken, USA: John Wiley & Sons, Inc</publisher><subject>Adaptive immunology ; Advanced Review ; Advanced Reviews ; Biochemistry ; Biochemistry, Molecular Biology ; Codons ; decay ; degradation ; Gene expression ; Genetic code ; Genomics ; Immunology ; Innate immunity ; Life Sciences ; Microbiology and Parasitology ; Molecular biology ; mRNA ; mRNA turnover ; Nonsense Mediated mRNA Decay ; Protein Biosynthesis ; Quality control ; Regulation of RNA Stability ; ribosome ; Ribosomes ; Ribosomes - genetics ; Ribosomes - metabolism ; RNA Stability ; RNA, Messenger - genetics ; RNA, Messenger - metabolism ; RNA‐Protein Complexes ; Surveillance ; Translation ; Translation Regulation ; Virology</subject><ispartof>Wiley interdisciplinary reviews. RNA, 2021-11, Vol.12 (6), p.e1658-n/a</ispartof><rights>2021 The Authors. WIREs RNA published by Wiley Periodicals LLC.</rights><rights>2021. This article is published under http://creativecommons.org/licenses/by-nc-nd/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4778-a1cc162764ecd6cefa3febecd04de5a59b9f8a89ddb4468b18b3ae57f7bd2c653</citedby><cites>FETCH-LOGICAL-c4778-a1cc162764ecd6cefa3febecd04de5a59b9f8a89ddb4468b18b3ae57f7bd2c653</cites><orcidid>0000-0002-9789-5837 ; 0000-0003-1575-4609 ; 0000-0002-8018-8765</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1002%2Fwrna.1658$$EPDF$$P50$$Gwiley$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1002%2Fwrna.1658$$EHTML$$P50$$Gwiley$$Hfree_for_read</linktohtml><link.rule.ids>230,314,780,784,885,1416,27922,27923,45572,45573</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33949788$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.science/hal-03293983$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Morris, Christelle</creatorcontrib><creatorcontrib>Cluet, David</creatorcontrib><creatorcontrib>Ricci, Emiliano P.</creatorcontrib><title>Ribosome dynamics and mRNA turnover, a complex relationship under constant cellular scrutiny</title><title>Wiley interdisciplinary reviews. RNA</title><addtitle>Wiley Interdiscip Rev RNA</addtitle><description>Eukaryotic gene expression is closely regulated by translation and turnover of mRNAs. Recent advances highlight the importance of translation in the control of mRNA degradation, both for aberrant and apparently normal mRNAs. During translation, the information contained in mRNAs is decoded by ribosomes, one codon at a time, and tRNAs, by specifically recognizing codons, translate the nucleotide code into amino acids. Such a decoding step does not process regularly, with various obstacles that can hinder ribosome progression, then leading to ribosome stalling or collisions. The progression of ribosomes is constantly monitored by the cell which has evolved several translation‐dependent mRNA surveillance pathways, including nonsense‐mediated decay (NMD), no‐go decay (NGD), and non‐stop decay (NSD), to degrade certain problematic mRNAs and the incomplete protein products. Recent progress in sequencing and ribosome profiling has made it possible to discover new mechanisms controlling ribosome dynamics, with numerous crosstalks between translation and mRNA decay. We discuss here various translation features critical for mRNA decay, with particular focus on current insights from the complexity of the genetic code and also the emerging role for the ribosome as a regulatory hub orchestrating mRNA decay, quality control, and stress signaling. Even if the interplay between mRNA translation and degradation is no longer to be demonstrated, a better understanding of their precise coordination is worthy of further investigation.
This article is categorized under:
RNA Turnover and Surveillance > Regulation of RNA Stability
Translation > Translation Regulation
RNA Interactions with Proteins and Other Molecules > RNA‐Protein Complexes
The process of mRNA translation is tightly monitored by eukaryotic cells to ensure the correct progression of ribosomes. A multitude of different pathways have evolved to mediate co‐translational mRNA degradation in order to restrict expression of aberrant mRNAs but also that of functional mRNAs.</description><subject>Adaptive immunology</subject><subject>Advanced Review</subject><subject>Advanced Reviews</subject><subject>Biochemistry</subject><subject>Biochemistry, Molecular Biology</subject><subject>Codons</subject><subject>decay</subject><subject>degradation</subject><subject>Gene expression</subject><subject>Genetic code</subject><subject>Genomics</subject><subject>Immunology</subject><subject>Innate immunity</subject><subject>Life Sciences</subject><subject>Microbiology and Parasitology</subject><subject>Molecular biology</subject><subject>mRNA</subject><subject>mRNA turnover</subject><subject>Nonsense Mediated mRNA Decay</subject><subject>Protein Biosynthesis</subject><subject>Quality control</subject><subject>Regulation of RNA Stability</subject><subject>ribosome</subject><subject>Ribosomes</subject><subject>Ribosomes - genetics</subject><subject>Ribosomes - metabolism</subject><subject>RNA Stability</subject><subject>RNA, Messenger - genetics</subject><subject>RNA, Messenger - metabolism</subject><subject>RNA‐Protein Complexes</subject><subject>Surveillance</subject><subject>Translation</subject><subject>Translation Regulation</subject><subject>Virology</subject><issn>1757-7004</issn><issn>1757-7012</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>WIN</sourceid><sourceid>EIF</sourceid><recordid>eNp1kVFrFDEQx4MottQ--AUk4ItCr02y2U3yIhxFrXAoFMUXIWSTWS9lNzmT3av37Zv16qkF85Jh5pf_ZOaP0HNKzikh7OI2BXNOm1o-QsdU1GIhCGWPDzHhR-g05xtSDidMUPoUHVWV4kpIeYy-Xfs25jgAdrtgBm8zNsHh4frjEo9TCnEL6QwbbOOw6eEnTtCb0ceQ136Dp-AglVLIowkjttD3U28SzjZNow-7Z-hJZ_oMp_f3Cfry7u3ny6vF6tP7D5fL1cJyIeTCUGtpw0TDwbrGQmeqDtoSE-6gNrVqVSeNVM61nDeypbKtDNSiE61jtqmrE_Rmr7uZ2gGchTAm0-tN8oNJOx2N1_9Wgl_r73GrZU0V4U0ReL0XWD94drVc6TlHKqYqJastLeyr-2Yp_pggj3rweR7dBIhT1qxmjBMiKCvoywfoTSw7LasolFCKUyrZn-Y2xZwTdIcfUKJni_VssZ4tLuyLvyc9kL8NLcDFHrj1Pez-r6S_Fod_Sd4BckOy9A</recordid><startdate>202111</startdate><enddate>202111</enddate><creator>Morris, Christelle</creator><creator>Cluet, David</creator><creator>Ricci, Emiliano P.</creator><general>John Wiley & Sons, Inc</general><general>Wiley Subscription Services, Inc</general><general>Wiley</general><scope>24P</scope><scope>WIN</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7TM</scope><scope>7X8</scope><scope>1XC</scope><scope>VOOES</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-9789-5837</orcidid><orcidid>https://orcid.org/0000-0003-1575-4609</orcidid><orcidid>https://orcid.org/0000-0002-8018-8765</orcidid></search><sort><creationdate>202111</creationdate><title>Ribosome dynamics and mRNA turnover, a complex relationship under constant cellular scrutiny</title><author>Morris, Christelle ; Cluet, David ; Ricci, Emiliano P.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4778-a1cc162764ecd6cefa3febecd04de5a59b9f8a89ddb4468b18b3ae57f7bd2c653</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Adaptive immunology</topic><topic>Advanced Review</topic><topic>Advanced Reviews</topic><topic>Biochemistry</topic><topic>Biochemistry, Molecular Biology</topic><topic>Codons</topic><topic>decay</topic><topic>degradation</topic><topic>Gene expression</topic><topic>Genetic code</topic><topic>Genomics</topic><topic>Immunology</topic><topic>Innate immunity</topic><topic>Life Sciences</topic><topic>Microbiology and Parasitology</topic><topic>Molecular biology</topic><topic>mRNA</topic><topic>mRNA turnover</topic><topic>Nonsense Mediated mRNA Decay</topic><topic>Protein Biosynthesis</topic><topic>Quality control</topic><topic>Regulation of RNA Stability</topic><topic>ribosome</topic><topic>Ribosomes</topic><topic>Ribosomes - genetics</topic><topic>Ribosomes - metabolism</topic><topic>RNA Stability</topic><topic>RNA, Messenger - genetics</topic><topic>RNA, Messenger - metabolism</topic><topic>RNA‐Protein Complexes</topic><topic>Surveillance</topic><topic>Translation</topic><topic>Translation Regulation</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Morris, Christelle</creatorcontrib><creatorcontrib>Cluet, David</creatorcontrib><creatorcontrib>Ricci, Emiliano P.</creatorcontrib><collection>Wiley-Blackwell Open Access Titles</collection><collection>Wiley Free Content</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Nucleic Acids Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><collection>Hyper Article en Ligne (HAL) (Open Access)</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Wiley interdisciplinary reviews. RNA</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Morris, Christelle</au><au>Cluet, David</au><au>Ricci, Emiliano P.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Ribosome dynamics and mRNA turnover, a complex relationship under constant cellular scrutiny</atitle><jtitle>Wiley interdisciplinary reviews. RNA</jtitle><addtitle>Wiley Interdiscip Rev RNA</addtitle><date>2021-11</date><risdate>2021</risdate><volume>12</volume><issue>6</issue><spage>e1658</spage><epage>n/a</epage><pages>e1658-n/a</pages><issn>1757-7004</issn><eissn>1757-7012</eissn><abstract>Eukaryotic gene expression is closely regulated by translation and turnover of mRNAs. Recent advances highlight the importance of translation in the control of mRNA degradation, both for aberrant and apparently normal mRNAs. During translation, the information contained in mRNAs is decoded by ribosomes, one codon at a time, and tRNAs, by specifically recognizing codons, translate the nucleotide code into amino acids. Such a decoding step does not process regularly, with various obstacles that can hinder ribosome progression, then leading to ribosome stalling or collisions. The progression of ribosomes is constantly monitored by the cell which has evolved several translation‐dependent mRNA surveillance pathways, including nonsense‐mediated decay (NMD), no‐go decay (NGD), and non‐stop decay (NSD), to degrade certain problematic mRNAs and the incomplete protein products. Recent progress in sequencing and ribosome profiling has made it possible to discover new mechanisms controlling ribosome dynamics, with numerous crosstalks between translation and mRNA decay. We discuss here various translation features critical for mRNA decay, with particular focus on current insights from the complexity of the genetic code and also the emerging role for the ribosome as a regulatory hub orchestrating mRNA decay, quality control, and stress signaling. Even if the interplay between mRNA translation and degradation is no longer to be demonstrated, a better understanding of their precise coordination is worthy of further investigation.
This article is categorized under:
RNA Turnover and Surveillance > Regulation of RNA Stability
Translation > Translation Regulation
RNA Interactions with Proteins and Other Molecules > RNA‐Protein Complexes
The process of mRNA translation is tightly monitored by eukaryotic cells to ensure the correct progression of ribosomes. A multitude of different pathways have evolved to mediate co‐translational mRNA degradation in order to restrict expression of aberrant mRNAs but also that of functional mRNAs.</abstract><cop>Hoboken, USA</cop><pub>John Wiley & Sons, Inc</pub><pmid>33949788</pmid><doi>10.1002/wrna.1658</doi><tpages>34</tpages><orcidid>https://orcid.org/0000-0002-9789-5837</orcidid><orcidid>https://orcid.org/0000-0003-1575-4609</orcidid><orcidid>https://orcid.org/0000-0002-8018-8765</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Adaptive immunology Advanced Review Advanced Reviews Biochemistry Biochemistry, Molecular Biology Codons decay degradation Gene expression Genetic code Genomics Immunology Innate immunity Life Sciences Microbiology and Parasitology Molecular biology mRNA mRNA turnover Nonsense Mediated mRNA Decay Protein Biosynthesis Quality control Regulation of RNA Stability ribosome Ribosomes Ribosomes - genetics Ribosomes - metabolism RNA Stability RNA, Messenger - genetics RNA, Messenger - metabolism RNA‐Protein Complexes Surveillance Translation Translation Regulation Virology |
title | Ribosome dynamics and mRNA turnover, a complex relationship under constant cellular scrutiny |
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