Phylogenomics resolves deep subfamilial relationships in Malvaceae s.l
Abstract Malvaceae s.l., the most diverse family within Malvales, includes well-known species of great economic importance like cotton, cacao, and durian. Despite numerous phylogenetic analyses employing multiple markers, relationships between several of its nine subfamilies, particularly within the...
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| Veröffentlicht in: | G3 : genes - genomes - genetics 2021-07, Vol.11 (7) |
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| creator | Cvetković, Tijana Areces-Berazain, Fabiola Hinsinger, Damien D Thomas, Daniel C Wieringa, Jan J Ganesan, Santhana K Strijk, Joeri S |
| description | Abstract
Malvaceae s.l., the most diverse family within Malvales, includes well-known species of great economic importance like cotton, cacao, and durian. Despite numerous phylogenetic analyses employing multiple markers, relationships between several of its nine subfamilies, particularly within the largest lineage /Malvadendrina, remain unclear. In this study, we attempted to resolve the relationships within the major clades of Malvaceae s.l. using plastid genomes of 48 accessions representing all subfamilies. Maximum likelihood and Bayesian analyses recovered a fully resolved and well-supported topology confirming the split of the family into /Byttneriina (/Grewioideae +/Byttnerioideae) and /Malvadendrina. Within /Malvadendrina, /Helicteroideae occupied the earliest branching position, followed by /Sterculioideae, /Brownlowioideae, /Tiliodeae, and /Dombeyoideae formed a clade sister to /Malvatheca (/Malvoideae +/Bombacoideae), a grouping morphologically supported by the lack of androgynophore. Results from dating analyses suggest that all subfamilies originated during hot or warm phases in the Late Cretaceous to Paleocene. This study presents a well-supported phylogenetic framework for Malvaceae s.l. that will aid downstream revisions and evolutionary studies of this economically important plant family. |
| doi_str_mv | 10.1093/g3journal/jkab136 |
| format | Article |
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Malvaceae s.l., the most diverse family within Malvales, includes well-known species of great economic importance like cotton, cacao, and durian. Despite numerous phylogenetic analyses employing multiple markers, relationships between several of its nine subfamilies, particularly within the largest lineage /Malvadendrina, remain unclear. In this study, we attempted to resolve the relationships within the major clades of Malvaceae s.l. using plastid genomes of 48 accessions representing all subfamilies. Maximum likelihood and Bayesian analyses recovered a fully resolved and well-supported topology confirming the split of the family into /Byttneriina (/Grewioideae +/Byttnerioideae) and /Malvadendrina. Within /Malvadendrina, /Helicteroideae occupied the earliest branching position, followed by /Sterculioideae, /Brownlowioideae, /Tiliodeae, and /Dombeyoideae formed a clade sister to /Malvatheca (/Malvoideae +/Bombacoideae), a grouping morphologically supported by the lack of androgynophore. Results from dating analyses suggest that all subfamilies originated during hot or warm phases in the Late Cretaceous to Paleocene. This study presents a well-supported phylogenetic framework for Malvaceae s.l. that will aid downstream revisions and evolutionary studies of this economically important plant family.</description><identifier>ISSN: 2160-1836</identifier><identifier>EISSN: 2160-1836</identifier><identifier>DOI: 10.1093/g3journal/jkab136</identifier><identifier>PMID: 33892500</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Analysis ; Biodiversity ; Genomes ; Genomics ; International economic relations ; Investigation ; Life Sciences ; Pharmaceutical industry ; Phylogeny ; Populations and Evolution</subject><ispartof>G3 : genes - genomes - genetics, 2021-07, Vol.11 (7)</ispartof><rights>The Author(s) 2021. Published by Oxford University Press on behalf of Genetics Society of America. 2021</rights><rights>The Author(s) 2021. Published by Oxford University Press on the Genetics Society of America.</rights><rights>COPYRIGHT 2021 Oxford University Press</rights><rights>Attribution - NonCommercial - NoDerivatives</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c494t-e16a74d691b0d1585bbcda6da9cfb26103717fea137a8e0b288188aca92a462d3</citedby><cites>FETCH-LOGICAL-c494t-e16a74d691b0d1585bbcda6da9cfb26103717fea137a8e0b288188aca92a462d3</cites><orcidid>0000-0001-7459-7610 ; 0000-0003-1109-7015 ; 0000-0001-7679-0991</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8496235/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8496235/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,1604,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33892500$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.inrae.fr/hal-03370590$$DView record in HAL$$Hfree_for_read</backlink></links><search><contributor>Mathews, S</contributor><creatorcontrib>Cvetković, Tijana</creatorcontrib><creatorcontrib>Areces-Berazain, Fabiola</creatorcontrib><creatorcontrib>Hinsinger, Damien D</creatorcontrib><creatorcontrib>Thomas, Daniel C</creatorcontrib><creatorcontrib>Wieringa, Jan J</creatorcontrib><creatorcontrib>Ganesan, Santhana K</creatorcontrib><creatorcontrib>Strijk, Joeri S</creatorcontrib><title>Phylogenomics resolves deep subfamilial relationships in Malvaceae s.l</title><title>G3 : genes - genomes - genetics</title><addtitle>G3 (Bethesda)</addtitle><description>Abstract
Malvaceae s.l., the most diverse family within Malvales, includes well-known species of great economic importance like cotton, cacao, and durian. Despite numerous phylogenetic analyses employing multiple markers, relationships between several of its nine subfamilies, particularly within the largest lineage /Malvadendrina, remain unclear. In this study, we attempted to resolve the relationships within the major clades of Malvaceae s.l. using plastid genomes of 48 accessions representing all subfamilies. Maximum likelihood and Bayesian analyses recovered a fully resolved and well-supported topology confirming the split of the family into /Byttneriina (/Grewioideae +/Byttnerioideae) and /Malvadendrina. Within /Malvadendrina, /Helicteroideae occupied the earliest branching position, followed by /Sterculioideae, /Brownlowioideae, /Tiliodeae, and /Dombeyoideae formed a clade sister to /Malvatheca (/Malvoideae +/Bombacoideae), a grouping morphologically supported by the lack of androgynophore. Results from dating analyses suggest that all subfamilies originated during hot or warm phases in the Late Cretaceous to Paleocene. This study presents a well-supported phylogenetic framework for Malvaceae s.l. that will aid downstream revisions and evolutionary studies of this economically important plant family.</description><subject>Analysis</subject><subject>Biodiversity</subject><subject>Genomes</subject><subject>Genomics</subject><subject>International economic relations</subject><subject>Investigation</subject><subject>Life Sciences</subject><subject>Pharmaceutical industry</subject><subject>Phylogeny</subject><subject>Populations and Evolution</subject><issn>2160-1836</issn><issn>2160-1836</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>TOX</sourceid><recordid>eNqNUU1v1DAQtRAVrUp_ABeUI0js1h-xY1-QVhVtkRaVA5ytiTPZ9eLEId6s1H9fV1lWhROeg0cz770Z-xHyjtElo0Zcb8QuTmMP4Xr3C2om1CtywZmiC6aFev0iPydXKe1oPlIqVao35FwIbbik9ILcft8-hrjBPnbepWLEFMMBU9EgDkWa6hY6HzyE3Amw97FPWz-kwvfFNwgHcAhYpGV4S85aCAmvjvcl-Xn75cfN_WL9cPf1ZrVeuNKU-wUyBVXZKMNq2jCpZV27BlQDxrU1V4yKilUtAhMVaKQ115ppDQ4Mh1LxRlySz7PuMNUdNg77_QjBDqPvYHy0Ebz9u9P7rd3Eg9WlUVzILPBxFtj-Q7tfre1zjQpRUWnogWXsh-OwMf6eMO1t55PDEKDHOCXLJdOcV4zTDF3O0A0EtL5vY57ucjSY_zX22PpcX1WVkZQJbjKBzQQ3xpRGbE_LMGqf_bUnf-3R38x5__LxJ8YfNzPg0wyI0_Afek-FFrQZ</recordid><startdate>20210701</startdate><enddate>20210701</enddate><creator>Cvetković, Tijana</creator><creator>Areces-Berazain, Fabiola</creator><creator>Hinsinger, Damien D</creator><creator>Thomas, Daniel C</creator><creator>Wieringa, Jan J</creator><creator>Ganesan, Santhana K</creator><creator>Strijk, Joeri S</creator><general>Oxford University Press</general><general>Genetics Society of America</general><scope>TOX</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>IAO</scope><scope>7X8</scope><scope>1XC</scope><scope>VOOES</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0001-7459-7610</orcidid><orcidid>https://orcid.org/0000-0003-1109-7015</orcidid><orcidid>https://orcid.org/0000-0001-7679-0991</orcidid></search><sort><creationdate>20210701</creationdate><title>Phylogenomics resolves deep subfamilial relationships in Malvaceae s.l</title><author>Cvetković, Tijana ; Areces-Berazain, Fabiola ; Hinsinger, Damien D ; Thomas, Daniel C ; Wieringa, Jan J ; Ganesan, Santhana K ; Strijk, Joeri S</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c494t-e16a74d691b0d1585bbcda6da9cfb26103717fea137a8e0b288188aca92a462d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Analysis</topic><topic>Biodiversity</topic><topic>Genomes</topic><topic>Genomics</topic><topic>International economic relations</topic><topic>Investigation</topic><topic>Life Sciences</topic><topic>Pharmaceutical industry</topic><topic>Phylogeny</topic><topic>Populations and Evolution</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Cvetković, Tijana</creatorcontrib><creatorcontrib>Areces-Berazain, Fabiola</creatorcontrib><creatorcontrib>Hinsinger, Damien D</creatorcontrib><creatorcontrib>Thomas, Daniel C</creatorcontrib><creatorcontrib>Wieringa, Jan J</creatorcontrib><creatorcontrib>Ganesan, Santhana K</creatorcontrib><creatorcontrib>Strijk, Joeri S</creatorcontrib><collection>Access via Oxford University Press (Open Access Collection)</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale Academic OneFile</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><collection>Hyper Article en Ligne (HAL) (Open Access)</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>G3 : genes - genomes - genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Cvetković, Tijana</au><au>Areces-Berazain, Fabiola</au><au>Hinsinger, Damien D</au><au>Thomas, Daniel C</au><au>Wieringa, Jan J</au><au>Ganesan, Santhana K</au><au>Strijk, Joeri S</au><au>Mathews, S</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogenomics resolves deep subfamilial relationships in Malvaceae s.l</atitle><jtitle>G3 : genes - genomes - genetics</jtitle><addtitle>G3 (Bethesda)</addtitle><date>2021-07-01</date><risdate>2021</risdate><volume>11</volume><issue>7</issue><issn>2160-1836</issn><eissn>2160-1836</eissn><abstract>Abstract
Malvaceae s.l., the most diverse family within Malvales, includes well-known species of great economic importance like cotton, cacao, and durian. Despite numerous phylogenetic analyses employing multiple markers, relationships between several of its nine subfamilies, particularly within the largest lineage /Malvadendrina, remain unclear. In this study, we attempted to resolve the relationships within the major clades of Malvaceae s.l. using plastid genomes of 48 accessions representing all subfamilies. Maximum likelihood and Bayesian analyses recovered a fully resolved and well-supported topology confirming the split of the family into /Byttneriina (/Grewioideae +/Byttnerioideae) and /Malvadendrina. Within /Malvadendrina, /Helicteroideae occupied the earliest branching position, followed by /Sterculioideae, /Brownlowioideae, /Tiliodeae, and /Dombeyoideae formed a clade sister to /Malvatheca (/Malvoideae +/Bombacoideae), a grouping morphologically supported by the lack of androgynophore. Results from dating analyses suggest that all subfamilies originated during hot or warm phases in the Late Cretaceous to Paleocene. This study presents a well-supported phylogenetic framework for Malvaceae s.l. that will aid downstream revisions and evolutionary studies of this economically important plant family.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>33892500</pmid><doi>10.1093/g3journal/jkab136</doi><orcidid>https://orcid.org/0000-0001-7459-7610</orcidid><orcidid>https://orcid.org/0000-0003-1109-7015</orcidid><orcidid>https://orcid.org/0000-0001-7679-0991</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Analysis Biodiversity Genomes Genomics International economic relations Investigation Life Sciences Pharmaceutical industry Phylogeny Populations and Evolution |
| title | Phylogenomics resolves deep subfamilial relationships in Malvaceae s.l |
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