Marine dissolved organic matter: a vast and unexplored molecular space

Marine dissolved organic matter (DOM) comprises a vast and unexplored molecular space. Most of it resided in the oceans for thousands of years. It is among the most diverse molecular mixtures known, consisting of millions of individual compounds. More than 1 Eg of this material exists on the planet....

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Applied microbiology and biotechnology 2021-10, Vol.105 (19), p.7225-7239
Hauptverfasser: Catalá, Teresa S., Shorte, Spencer, Dittmar, Thorsten
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 7239
container_issue 19
container_start_page 7225
container_title Applied microbiology and biotechnology
container_volume 105
creator Catalá, Teresa S.
Shorte, Spencer
Dittmar, Thorsten
description Marine dissolved organic matter (DOM) comprises a vast and unexplored molecular space. Most of it resided in the oceans for thousands of years. It is among the most diverse molecular mixtures known, consisting of millions of individual compounds. More than 1 Eg of this material exists on the planet. As such, it comprises a formidable source of natural products promising significant potential for new biotechnological purposes. Great emphasis has been placed on understanding the role of DOM in biogeochemical cycles and climate attenuation, its lifespan, interaction with microorganisms, as well as its molecular composition. Yet, probing DOM bioactivities is in its infancy, largely because it is technically challenging due to the chemical complexity of the material. It is of considerable interest to develop technologies capable to better discern DOM bioactivities. Modern screening technologies are opening new avenues allowing accelerated identification of bioactivities for small molecules from natural products. These methods diminish a priori the need for laborious chemical fractionation. We examine here the application of untargeted metabolomics and multiplexed high-throughput molecular-phenotypic screening techniques that are providing first insights on previously undetectable DOM bioactivities. Key points • Marine DOM is a vast, unexplored biotechnological resource. • Untargeted bioscreening approaches are emerging for natural product screening. • Perspectives for developing bioscreening platforms for marine DOM are discussed.
doi_str_mv 10.1007/s00253-021-11489-3
format Article
fullrecord <record><control><sourceid>gale_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8494709</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A678232295</galeid><sourcerecordid>A678232295</sourcerecordid><originalsourceid>FETCH-LOGICAL-c575t-1ebdbf87e0092c8e25dd595c6f60357eedcef99fdc299fa88a310998a693394f3</originalsourceid><addsrcrecordid>eNp9kl1rFDEUhoModq3-AS9kwBu9mJrvDy-EUqwWKoIf1yGbOTOmzCRrMrPUf2_Wra0rIoEEcp73PZzDi9BTgk8IxupVwZgK1mJKWkK4Ni27h1aEM9piSfh9tMJEiVYJo4_Qo1KuMCZUS_kQHTEumCRYrtD5B5dDhKYLpaRxC12T8uBi8M3k5hny68Y1W1fmxsWuWSJcb8aUKzWlEfwyutyUjfPwGD3o3Vjgyc17jL6ev_1y9r69_Pju4uz0svVCibklsO7WvVaAsaFeAxVdJ4zwspeYCQXQeeiN6TtP6-20doxgY7SThjHDe3aM3ux9N8t62tFxzm60mxwml3_Y5II9rMTwzQ5pazU3XGFTDV7cGOT0fYEy2ykUD-PoIqSlWCoUZ0ZpIyv6_C_0Ki051vF2lOGSS03vqMGNYEPsU-3rd6b2VKoKUGpEpU7-QdXTwRR8itCH-n8geHkgqMwM1_PgllLsxedPhyzdsz6nUjL0t_sg2O6SYvdJsTUp9ldSLKuiZ39u8lbyOxoVYHug1FIcIN-N_x_bn-4ex3Y</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2579464682</pqid></control><display><type>article</type><title>Marine dissolved organic matter: a vast and unexplored molecular space</title><source>MEDLINE</source><source>SpringerNature Journals</source><creator>Catalá, Teresa S. ; Shorte, Spencer ; Dittmar, Thorsten</creator><creatorcontrib>Catalá, Teresa S. ; Shorte, Spencer ; Dittmar, Thorsten</creatorcontrib><description>Marine dissolved organic matter (DOM) comprises a vast and unexplored molecular space. Most of it resided in the oceans for thousands of years. It is among the most diverse molecular mixtures known, consisting of millions of individual compounds. More than 1 Eg of this material exists on the planet. As such, it comprises a formidable source of natural products promising significant potential for new biotechnological purposes. Great emphasis has been placed on understanding the role of DOM in biogeochemical cycles and climate attenuation, its lifespan, interaction with microorganisms, as well as its molecular composition. Yet, probing DOM bioactivities is in its infancy, largely because it is technically challenging due to the chemical complexity of the material. It is of considerable interest to develop technologies capable to better discern DOM bioactivities. Modern screening technologies are opening new avenues allowing accelerated identification of bioactivities for small molecules from natural products. These methods diminish a priori the need for laborious chemical fractionation. We examine here the application of untargeted metabolomics and multiplexed high-throughput molecular-phenotypic screening techniques that are providing first insights on previously undetectable DOM bioactivities. Key points • Marine DOM is a vast, unexplored biotechnological resource. • Untargeted bioscreening approaches are emerging for natural product screening. • Perspectives for developing bioscreening platforms for marine DOM are discussed.</description><identifier>ISSN: 0175-7598</identifier><identifier>EISSN: 1432-0614</identifier><identifier>DOI: 10.1007/s00253-021-11489-3</identifier><identifier>PMID: 34536106</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Analysis ; Astrochemistry ; Attenuation ; Biogeochemical cycles ; Biological activity ; Biomedical and Life Sciences ; Biotechnology ; Chemical composition ; Chemical fractionation ; Dissolved organic matter ; Fractionation ; Life Sciences ; Life span ; Metabolomics ; Microbial Genetics and Genomics ; Microbiology ; Microorganisms ; Mini-Review ; Natural products ; Oceans ; Particles ; Screening ; Sea-water</subject><ispartof>Applied microbiology and biotechnology, 2021-10, Vol.105 (19), p.7225-7239</ispartof><rights>The Author(s) 2022. corrected publication 2022</rights><rights>2021. The Author(s).</rights><rights>COPYRIGHT 2021 Springer</rights><rights>The Author(s) 2022. corrected publication 2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>The Author(s) 2022, corrected publication 2022</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c575t-1ebdbf87e0092c8e25dd595c6f60357eedcef99fdc299fa88a310998a693394f3</citedby><cites>FETCH-LOGICAL-c575t-1ebdbf87e0092c8e25dd595c6f60357eedcef99fdc299fa88a310998a693394f3</cites><orcidid>0000-0002-1922-3277</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00253-021-11489-3$$EPDF$$P50$$Gspringer$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00253-021-11489-3$$EHTML$$P50$$Gspringer$$Hfree_for_read</linktohtml><link.rule.ids>230,314,780,784,885,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34536106$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Catalá, Teresa S.</creatorcontrib><creatorcontrib>Shorte, Spencer</creatorcontrib><creatorcontrib>Dittmar, Thorsten</creatorcontrib><title>Marine dissolved organic matter: a vast and unexplored molecular space</title><title>Applied microbiology and biotechnology</title><addtitle>Appl Microbiol Biotechnol</addtitle><addtitle>Appl Microbiol Biotechnol</addtitle><description>Marine dissolved organic matter (DOM) comprises a vast and unexplored molecular space. Most of it resided in the oceans for thousands of years. It is among the most diverse molecular mixtures known, consisting of millions of individual compounds. More than 1 Eg of this material exists on the planet. As such, it comprises a formidable source of natural products promising significant potential for new biotechnological purposes. Great emphasis has been placed on understanding the role of DOM in biogeochemical cycles and climate attenuation, its lifespan, interaction with microorganisms, as well as its molecular composition. Yet, probing DOM bioactivities is in its infancy, largely because it is technically challenging due to the chemical complexity of the material. It is of considerable interest to develop technologies capable to better discern DOM bioactivities. Modern screening technologies are opening new avenues allowing accelerated identification of bioactivities for small molecules from natural products. These methods diminish a priori the need for laborious chemical fractionation. We examine here the application of untargeted metabolomics and multiplexed high-throughput molecular-phenotypic screening techniques that are providing first insights on previously undetectable DOM bioactivities. Key points • Marine DOM is a vast, unexplored biotechnological resource. • Untargeted bioscreening approaches are emerging for natural product screening. • Perspectives for developing bioscreening platforms for marine DOM are discussed.</description><subject>Analysis</subject><subject>Astrochemistry</subject><subject>Attenuation</subject><subject>Biogeochemical cycles</subject><subject>Biological activity</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Chemical composition</subject><subject>Chemical fractionation</subject><subject>Dissolved organic matter</subject><subject>Fractionation</subject><subject>Life Sciences</subject><subject>Life span</subject><subject>Metabolomics</subject><subject>Microbial Genetics and Genomics</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Mini-Review</subject><subject>Natural products</subject><subject>Oceans</subject><subject>Particles</subject><subject>Screening</subject><subject>Sea-water</subject><issn>0175-7598</issn><issn>1432-0614</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kl1rFDEUhoModq3-AS9kwBu9mJrvDy-EUqwWKoIf1yGbOTOmzCRrMrPUf2_Wra0rIoEEcp73PZzDi9BTgk8IxupVwZgK1mJKWkK4Ni27h1aEM9piSfh9tMJEiVYJo4_Qo1KuMCZUS_kQHTEumCRYrtD5B5dDhKYLpaRxC12T8uBi8M3k5hny68Y1W1fmxsWuWSJcb8aUKzWlEfwyutyUjfPwGD3o3Vjgyc17jL6ev_1y9r69_Pju4uz0svVCibklsO7WvVaAsaFeAxVdJ4zwspeYCQXQeeiN6TtP6-20doxgY7SThjHDe3aM3ux9N8t62tFxzm60mxwml3_Y5II9rMTwzQ5pazU3XGFTDV7cGOT0fYEy2ykUD-PoIqSlWCoUZ0ZpIyv6_C_0Ki051vF2lOGSS03vqMGNYEPsU-3rd6b2VKoKUGpEpU7-QdXTwRR8itCH-n8geHkgqMwM1_PgllLsxedPhyzdsz6nUjL0t_sg2O6SYvdJsTUp9ldSLKuiZ39u8lbyOxoVYHug1FIcIN-N_x_bn-4ex3Y</recordid><startdate>20211001</startdate><enddate>20211001</enddate><creator>Catalá, Teresa S.</creator><creator>Shorte, Spencer</creator><creator>Dittmar, Thorsten</creator><general>Springer Berlin Heidelberg</general><general>Springer</general><general>Springer Nature B.V</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ISR</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7WY</scope><scope>7WZ</scope><scope>7X7</scope><scope>7XB</scope><scope>87Z</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8FL</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BEZIV</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FRNLG</scope><scope>FYUFA</scope><scope>F~G</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K60</scope><scope>K6~</scope><scope>K9.</scope><scope>L.-</scope><scope>LK8</scope><scope>M0C</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQBIZ</scope><scope>PQBZA</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-1922-3277</orcidid></search><sort><creationdate>20211001</creationdate><title>Marine dissolved organic matter: a vast and unexplored molecular space</title><author>Catalá, Teresa S. ; Shorte, Spencer ; Dittmar, Thorsten</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c575t-1ebdbf87e0092c8e25dd595c6f60357eedcef99fdc299fa88a310998a693394f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Analysis</topic><topic>Astrochemistry</topic><topic>Attenuation</topic><topic>Biogeochemical cycles</topic><topic>Biological activity</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Chemical composition</topic><topic>Chemical fractionation</topic><topic>Dissolved organic matter</topic><topic>Fractionation</topic><topic>Life Sciences</topic><topic>Life span</topic><topic>Metabolomics</topic><topic>Microbial Genetics and Genomics</topic><topic>Microbiology</topic><topic>Microorganisms</topic><topic>Mini-Review</topic><topic>Natural products</topic><topic>Oceans</topic><topic>Particles</topic><topic>Screening</topic><topic>Sea-water</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Catalá, Teresa S.</creatorcontrib><creatorcontrib>Shorte, Spencer</creatorcontrib><creatorcontrib>Dittmar, Thorsten</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Access via ABI/INFORM (ProQuest)</collection><collection>ABI/INFORM Global (PDF only)</collection><collection>ProQuest Health and Medical</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>ABI/INFORM Global (Alumni Edition)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ABI/INFORM Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Business Premium Collection</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Business Premium Collection (Alumni)</collection><collection>Health Research Premium Collection</collection><collection>ABI/INFORM Global (Corporate)</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Business Collection (Alumni Edition)</collection><collection>ProQuest Business Collection</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>ABI/INFORM Professional Advanced</collection><collection>ProQuest Biological Science Collection</collection><collection>ABI/INFORM Global</collection><collection>Health &amp; Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>ProQuest Science Journals</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>ProQuest Biological Science Journals</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Business</collection><collection>ProQuest One Business (Alumni)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Applied microbiology and biotechnology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Catalá, Teresa S.</au><au>Shorte, Spencer</au><au>Dittmar, Thorsten</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Marine dissolved organic matter: a vast and unexplored molecular space</atitle><jtitle>Applied microbiology and biotechnology</jtitle><stitle>Appl Microbiol Biotechnol</stitle><addtitle>Appl Microbiol Biotechnol</addtitle><date>2021-10-01</date><risdate>2021</risdate><volume>105</volume><issue>19</issue><spage>7225</spage><epage>7239</epage><pages>7225-7239</pages><issn>0175-7598</issn><eissn>1432-0614</eissn><abstract>Marine dissolved organic matter (DOM) comprises a vast and unexplored molecular space. Most of it resided in the oceans for thousands of years. It is among the most diverse molecular mixtures known, consisting of millions of individual compounds. More than 1 Eg of this material exists on the planet. As such, it comprises a formidable source of natural products promising significant potential for new biotechnological purposes. Great emphasis has been placed on understanding the role of DOM in biogeochemical cycles and climate attenuation, its lifespan, interaction with microorganisms, as well as its molecular composition. Yet, probing DOM bioactivities is in its infancy, largely because it is technically challenging due to the chemical complexity of the material. It is of considerable interest to develop technologies capable to better discern DOM bioactivities. Modern screening technologies are opening new avenues allowing accelerated identification of bioactivities for small molecules from natural products. These methods diminish a priori the need for laborious chemical fractionation. We examine here the application of untargeted metabolomics and multiplexed high-throughput molecular-phenotypic screening techniques that are providing first insights on previously undetectable DOM bioactivities. Key points • Marine DOM is a vast, unexplored biotechnological resource. • Untargeted bioscreening approaches are emerging for natural product screening. • Perspectives for developing bioscreening platforms for marine DOM are discussed.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>34536106</pmid><doi>10.1007/s00253-021-11489-3</doi><tpages>15</tpages><orcidid>https://orcid.org/0000-0002-1922-3277</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0175-7598
ispartof Applied microbiology and biotechnology, 2021-10, Vol.105 (19), p.7225-7239
issn 0175-7598
1432-0614
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8494709
source MEDLINE; SpringerNature Journals
subjects Analysis
Astrochemistry
Attenuation
Biogeochemical cycles
Biological activity
Biomedical and Life Sciences
Biotechnology
Chemical composition
Chemical fractionation
Dissolved organic matter
Fractionation
Life Sciences
Life span
Metabolomics
Microbial Genetics and Genomics
Microbiology
Microorganisms
Mini-Review
Natural products
Oceans
Particles
Screening
Sea-water
title Marine dissolved organic matter: a vast and unexplored molecular space
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-03T22%3A05%3A45IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Marine%20dissolved%20organic%20matter:%20a%20vast%20and%20unexplored%20molecular%20space&rft.jtitle=Applied%20microbiology%20and%20biotechnology&rft.au=Catal%C3%A1,%20Teresa%20S.&rft.date=2021-10-01&rft.volume=105&rft.issue=19&rft.spage=7225&rft.epage=7239&rft.pages=7225-7239&rft.issn=0175-7598&rft.eissn=1432-0614&rft_id=info:doi/10.1007/s00253-021-11489-3&rft_dat=%3Cgale_pubme%3EA678232295%3C/gale_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2579464682&rft_id=info:pmid/34536106&rft_galeid=A678232295&rfr_iscdi=true