Comparative genomic analysis of MYB transcription factors for cuticular wax biosynthesis and drought stress tolerance in Helianthus annuus L
Sunflower is an important oil-seed crop in Pakistan, it is mainly cultivated in the spring season. It is severely affected by drought stress resulting in lower yield. Cuticular wax acts as the first defense line to protect plants from drought stress condition. It seals the aerial parts of plants and...
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Veröffentlicht in: | Saudi journal of biological sciences 2021-10, Vol.28 (10), p.5693-5703 |
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creator | Ahmad, Hafiz Muhammad Rahman, Mahmood-ur Ahmar, Sunny Fiaz, Sajid Azeem, Farrukh Shaheen, Tayyaba Ijaz, Munazza Anwer Bukhari, Shazia Khan, Sher Aslam Mora-Poblete, Freddy |
description | Sunflower is an important oil-seed crop in Pakistan, it is mainly cultivated in the spring season. It is severely affected by drought stress resulting in lower yield. Cuticular wax acts as the first defense line to protect plants from drought stress condition. It seals the aerial parts of plants and reduce the water loss from leaf surfaces. Various myeloblastosis (MYB) transcription factors (TFs) are involved in biosynthesis of epicuticular waxes under drought-stress. However, less information is available for MYB, TFs in drought stress and wax biosynthesis in sunflower. We used different computational tools to compare the Arabidopsis MYB, TFs involved in cuticular wax biosynthesis and drought stress tolerance with sunflower genome. We identified three putativeMYBgenes (MYB16, MYB94 and MYB96) in sunflower along with their seven homologs in Arabidopsis. Phylogenetic association of MYB TFs in Arabidopsis and sunflower indicated strong conservation of TFs in plant species. From gene structure analysis, it was observed that intron and exon organization was family-specific. MYB TFs were unevenly distributed on sunflower chromosomes. Evolutionary analysis indicated the segmental duplication ofthe MYBgene family in sunflower. Quantitative Real-Time PCR revealed the up-regulation of three MYBgenes under drought stress. The gene expression of MYB16,MYB94andMYB96were found many folds higher in experimental plants than control. The present study provided the first insight into MYB TFs family's characterization in sunflower under drought stress conditions and wax biosynthesis TFs. |
doi_str_mv | 10.1016/j.sjbs.2021.06.009 |
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It is severely affected by drought stress resulting in lower yield. Cuticular wax acts as the first defense line to protect plants from drought stress condition. It seals the aerial parts of plants and reduce the water loss from leaf surfaces. Various myeloblastosis (MYB) transcription factors (TFs) are involved in biosynthesis of epicuticular waxes under drought-stress. However, less information is available for MYB, TFs in drought stress and wax biosynthesis in sunflower. We used different computational tools to compare the Arabidopsis MYB, TFs involved in cuticular wax biosynthesis and drought stress tolerance with sunflower genome. We identified three putativeMYBgenes (MYB16, MYB94 and MYB96) in sunflower along with their seven homologs in Arabidopsis. Phylogenetic association of MYB TFs in Arabidopsis and sunflower indicated strong conservation of TFs in plant species. From gene structure analysis, it was observed that intron and exon organization was family-specific. MYB TFs were unevenly distributed on sunflower chromosomes. Evolutionary analysis indicated the segmental duplication ofthe MYBgene family in sunflower. Quantitative Real-Time PCR revealed the up-regulation of three MYBgenes under drought stress. The gene expression of MYB16,MYB94andMYB96were found many folds higher in experimental plants than control. The present study provided the first insight into MYB TFs family's characterization in sunflower under drought stress conditions and wax biosynthesis TFs.</description><identifier>ISSN: 1319-562X</identifier><identifier>EISSN: 2213-7106</identifier><identifier>DOI: 10.1016/j.sjbs.2021.06.009</identifier><identifier>PMID: 34588881</identifier><language>eng</language><publisher>Elsevier B.V</publisher><subject>Drought ; Gene expression ; Genome-wide identification ; MYB ; Original ; Sunflower ; Wax biosynthesis</subject><ispartof>Saudi journal of biological sciences, 2021-10, Vol.28 (10), p.5693-5703</ispartof><rights>2021 The Author(s)</rights><rights>2021 The Author(s) 2021</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c432t-e6a9947bc02c2be584f00567a800565757704a9fd67ff0d0750e4d4c9462ac923</citedby><cites>FETCH-LOGICAL-c432t-e6a9947bc02c2be584f00567a800565757704a9fd67ff0d0750e4d4c9462ac923</cites><orcidid>0000-0002-4845-3549</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8459054/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1319562X21004708$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,3537,27901,27902,53766,53768,65306</link.rule.ids></links><search><creatorcontrib>Ahmad, Hafiz Muhammad</creatorcontrib><creatorcontrib>Rahman, Mahmood-ur</creatorcontrib><creatorcontrib>Ahmar, Sunny</creatorcontrib><creatorcontrib>Fiaz, Sajid</creatorcontrib><creatorcontrib>Azeem, Farrukh</creatorcontrib><creatorcontrib>Shaheen, Tayyaba</creatorcontrib><creatorcontrib>Ijaz, Munazza</creatorcontrib><creatorcontrib>Anwer Bukhari, Shazia</creatorcontrib><creatorcontrib>Khan, Sher Aslam</creatorcontrib><creatorcontrib>Mora-Poblete, Freddy</creatorcontrib><title>Comparative genomic analysis of MYB transcription factors for cuticular wax biosynthesis and drought stress tolerance in Helianthus annuus L</title><title>Saudi journal of biological sciences</title><description>Sunflower is an important oil-seed crop in Pakistan, it is mainly cultivated in the spring season. It is severely affected by drought stress resulting in lower yield. Cuticular wax acts as the first defense line to protect plants from drought stress condition. It seals the aerial parts of plants and reduce the water loss from leaf surfaces. Various myeloblastosis (MYB) transcription factors (TFs) are involved in biosynthesis of epicuticular waxes under drought-stress. However, less information is available for MYB, TFs in drought stress and wax biosynthesis in sunflower. We used different computational tools to compare the Arabidopsis MYB, TFs involved in cuticular wax biosynthesis and drought stress tolerance with sunflower genome. We identified three putativeMYBgenes (MYB16, MYB94 and MYB96) in sunflower along with their seven homologs in Arabidopsis. Phylogenetic association of MYB TFs in Arabidopsis and sunflower indicated strong conservation of TFs in plant species. From gene structure analysis, it was observed that intron and exon organization was family-specific. MYB TFs were unevenly distributed on sunflower chromosomes. Evolutionary analysis indicated the segmental duplication ofthe MYBgene family in sunflower. Quantitative Real-Time PCR revealed the up-regulation of three MYBgenes under drought stress. The gene expression of MYB16,MYB94andMYB96were found many folds higher in experimental plants than control. The present study provided the first insight into MYB TFs family's characterization in sunflower under drought stress conditions and wax biosynthesis TFs.</description><subject>Drought</subject><subject>Gene expression</subject><subject>Genome-wide identification</subject><subject>MYB</subject><subject>Original</subject><subject>Sunflower</subject><subject>Wax biosynthesis</subject><issn>1319-562X</issn><issn>2213-7106</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNp9kcGO0zAURS0EYjodfoCVl2ySsR3bSSSEBBUwSEWzGSRmZTnOS-sqsYvtFPoPfDSOOkJigzd34Xvv03sHodeUlJRQeXso46GLJSOMlkSWhLTP0IoxWhU1JfI5WtGKtoWQ7PsVuo7xQIhsqoa-RFcVF01-dIV-b_x01EEnewK8A-cna7B2ejxHG7Ef8NfHDzgF7aIJ9pisd3jQJvkQ8eADNnOyZh51wD_1L9xZH88u7WHJatfjPvh5t084pgAx4uRHyFUGsHX4Dkars3lerG7Osr1BLwY9Rnj1pGv07dPHh81dsb3__GXzflsYXrFUgNRty-vOEGZYB6LhAyFC1rpZRNSirgnX7dDLehhIT2pBgPfctFwybVpWrdG7S-9x7iboDbi84aiOwU46nJXXVv374-xe7fxJNVy0RPBc8OapIPgfM8SkJhsNjKN24OeomKgbKliTWawRu1hN8DEGGP6OoUQtGNVBLRjVglERqTLGHHp7CUG-wslCUNFYyIfrbQCTVO_t_-J_AFC8qSc</recordid><startdate>20211001</startdate><enddate>20211001</enddate><creator>Ahmad, Hafiz Muhammad</creator><creator>Rahman, Mahmood-ur</creator><creator>Ahmar, Sunny</creator><creator>Fiaz, Sajid</creator><creator>Azeem, Farrukh</creator><creator>Shaheen, Tayyaba</creator><creator>Ijaz, Munazza</creator><creator>Anwer Bukhari, Shazia</creator><creator>Khan, Sher Aslam</creator><creator>Mora-Poblete, Freddy</creator><general>Elsevier B.V</general><general>Elsevier</general><scope>6I.</scope><scope>AAFTH</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-4845-3549</orcidid></search><sort><creationdate>20211001</creationdate><title>Comparative genomic analysis of MYB transcription factors for cuticular wax biosynthesis and drought stress tolerance in Helianthus annuus L</title><author>Ahmad, Hafiz Muhammad ; Rahman, Mahmood-ur ; Ahmar, Sunny ; Fiaz, Sajid ; Azeem, Farrukh ; Shaheen, Tayyaba ; Ijaz, Munazza ; Anwer Bukhari, Shazia ; Khan, Sher Aslam ; Mora-Poblete, Freddy</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c432t-e6a9947bc02c2be584f00567a800565757704a9fd67ff0d0750e4d4c9462ac923</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Drought</topic><topic>Gene expression</topic><topic>Genome-wide identification</topic><topic>MYB</topic><topic>Original</topic><topic>Sunflower</topic><topic>Wax biosynthesis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ahmad, Hafiz Muhammad</creatorcontrib><creatorcontrib>Rahman, Mahmood-ur</creatorcontrib><creatorcontrib>Ahmar, Sunny</creatorcontrib><creatorcontrib>Fiaz, Sajid</creatorcontrib><creatorcontrib>Azeem, Farrukh</creatorcontrib><creatorcontrib>Shaheen, Tayyaba</creatorcontrib><creatorcontrib>Ijaz, Munazza</creatorcontrib><creatorcontrib>Anwer Bukhari, Shazia</creatorcontrib><creatorcontrib>Khan, Sher Aslam</creatorcontrib><creatorcontrib>Mora-Poblete, Freddy</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Saudi journal of biological sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ahmad, Hafiz Muhammad</au><au>Rahman, Mahmood-ur</au><au>Ahmar, Sunny</au><au>Fiaz, Sajid</au><au>Azeem, Farrukh</au><au>Shaheen, Tayyaba</au><au>Ijaz, Munazza</au><au>Anwer Bukhari, Shazia</au><au>Khan, Sher Aslam</au><au>Mora-Poblete, Freddy</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Comparative genomic analysis of MYB transcription factors for cuticular wax biosynthesis and drought stress tolerance in Helianthus annuus L</atitle><jtitle>Saudi journal of biological sciences</jtitle><date>2021-10-01</date><risdate>2021</risdate><volume>28</volume><issue>10</issue><spage>5693</spage><epage>5703</epage><pages>5693-5703</pages><issn>1319-562X</issn><eissn>2213-7106</eissn><abstract>Sunflower is an important oil-seed crop in Pakistan, it is mainly cultivated in the spring season. It is severely affected by drought stress resulting in lower yield. Cuticular wax acts as the first defense line to protect plants from drought stress condition. It seals the aerial parts of plants and reduce the water loss from leaf surfaces. Various myeloblastosis (MYB) transcription factors (TFs) are involved in biosynthesis of epicuticular waxes under drought-stress. However, less information is available for MYB, TFs in drought stress and wax biosynthesis in sunflower. We used different computational tools to compare the Arabidopsis MYB, TFs involved in cuticular wax biosynthesis and drought stress tolerance with sunflower genome. We identified three putativeMYBgenes (MYB16, MYB94 and MYB96) in sunflower along with their seven homologs in Arabidopsis. Phylogenetic association of MYB TFs in Arabidopsis and sunflower indicated strong conservation of TFs in plant species. From gene structure analysis, it was observed that intron and exon organization was family-specific. MYB TFs were unevenly distributed on sunflower chromosomes. Evolutionary analysis indicated the segmental duplication ofthe MYBgene family in sunflower. Quantitative Real-Time PCR revealed the up-regulation of three MYBgenes under drought stress. The gene expression of MYB16,MYB94andMYB96were found many folds higher in experimental plants than control. The present study provided the first insight into MYB TFs family's characterization in sunflower under drought stress conditions and wax biosynthesis TFs.</abstract><pub>Elsevier B.V</pub><pmid>34588881</pmid><doi>10.1016/j.sjbs.2021.06.009</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0002-4845-3549</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Drought Gene expression Genome-wide identification MYB Original Sunflower Wax biosynthesis |
title | Comparative genomic analysis of MYB transcription factors for cuticular wax biosynthesis and drought stress tolerance in Helianthus annuus L |
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