A preliminary investigation into the immune cell landscape of schistosome‐associated liver fibrosis in humans
Schistosomiasis is a widespread helminth disease that poses a heavy social and economic burden on people worldwide. Advanced schistosomiasis often develops into schistosome‐associated liver fibrosis, the pathogenesis of which remains unclear. This study aimed preliminarily to profile immune cells of...
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Veröffentlicht in: | Immunology and cell biology 2021-09, Vol.99 (8), p.803-813 |
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description | Schistosomiasis is a widespread helminth disease that poses a heavy social and economic burden on people worldwide. Advanced schistosomiasis often develops into schistosome‐associated liver fibrosis, the pathogenesis of which remains unclear. This study aimed preliminarily to profile immune cells of schistosome‐associated liver fibrosis using single‐cell RNA sequencing. Three patient groups were enrolled, including an Schistosomiasis japonicum (SJ) group (n = 1), a chronic liver failure (CLF) group (n = 3) and a healthy control (HC) group (n = 2), revealing 17 cell clusters out of 20 093 cells. From these limited datasets, it was observed that T cell(1), mononuclear phagocytes‐1 and dendritic cells (DCs) were higher in the SJ group. CAVIN2+ MP(2) was the predominant cell type in the MP subset of the SJ group (53%), and was higher than that in both the CLF (8%) and HC (1%) groups. Kupffer cell marker genes (CD163, MARCO and TIMD4) were enriched in caveolae‐associated protein 2 (CAVIN2)+ MP(2), which was also an important source of TGFB1. The KEGG pathways of CAVIN2+ MP(2) indicated that they were associated with lysosome, endocytosis, phagosome and antigen processing and presentation. The preliminary study showed that granzyme B (GZMB)+ T cell(1) and ankyrin repeat domain‐containing protein 36B+ T cell(3) were the most common T cells in the SJ group (50% and 32%, respectively). The KEGG pathways of GZMB+ T cell(1) were mainly related to natural killer cell‐mediated cytotoxicity. The percentage of ring1 and YY1 binding protein (RYBP)+ DC(1) was higher in the SJ group (57%) than in the CLF (16%) and HC (6%) groups. The KEGG pathway of RYBP+ DC(1) was related to Fc gamma R‐mediated phagocytosis and antigen processing and presentation. Overall, CAVIN2+ Kupffer cells were the main source of TGFB1, consisting primarily of mononuclear phagocytes in the livers of the SJ group subjects and potentially playing an irreplaceable role in hepatic fibrosis of schistosomiasis.
The data in this study provide a reference map of the liver immune landscape of patients with schistosoma‐associated liver fibrosis. |
doi_str_mv | 10.1111/imcb.12490 |
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The data in this study provide a reference map of the liver immune landscape of patients with schistosoma‐associated liver fibrosis.</description><identifier>ISSN: 0818-9641</identifier><identifier>EISSN: 1440-1711</identifier><identifier>DOI: 10.1111/imcb.12490</identifier><identifier>PMID: 34355810</identifier><language>eng</language><publisher>London: Blackwell Science Ltd</publisher><subject>Ankyrins ; Antigen presentation ; Antigen processing ; Antigens ; Caveolae ; CD163 antigen ; Cytotoxicity ; Dendritic cells ; Endocytosis ; Fibrosis ; Granzyme B ; Hepatocytes ; Kupffer cells ; Leukocytes (mononuclear) ; Liver ; Liver diseases ; liver fibrosis ; Lymphocytes ; Lymphocytes T ; MARCO protein ; Natural killer cells ; Outstanding Observation ; Phagocytes ; Phagocytosis ; Proteins ; Schistosomiasis ; Schistosomiasis japonicum ; single‐cell sequencing ; Transforming growth factor-b1 ; YY1 protein</subject><ispartof>Immunology and cell biology, 2021-09, Vol.99 (8), p.803-813</ispartof><rights>2021 The Authors. published by John Wiley & Sons Australia, Ltd on behalf of Australian and New Zealand Society for Immunology, Inc</rights><rights>2021. This article is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4250-e2e4799af55f704bb4de739dcff87dce7115966556360c229e4ad54886e1a26d3</citedby><cites>FETCH-LOGICAL-c4250-e2e4799af55f704bb4de739dcff87dce7115966556360c229e4ad54886e1a26d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fimcb.12490$$EPDF$$P50$$Gwiley$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fimcb.12490$$EHTML$$P50$$Gwiley$$Hfree_for_read</linktohtml><link.rule.ids>230,314,780,784,885,1417,27924,27925,45574,45575</link.rule.ids></links><search><creatorcontrib>Zhang, Yu</creatorcontrib><creatorcontrib>Li, Junhui</creatorcontrib><creatorcontrib>Li, Hao</creatorcontrib><creatorcontrib>Zhou, Zhaoqin</creatorcontrib><creatorcontrib>Guo, Chen</creatorcontrib><creatorcontrib>Jiang, Jie</creatorcontrib><creatorcontrib>Ming, Yingzi</creatorcontrib><title>A preliminary investigation into the immune cell landscape of schistosome‐associated liver fibrosis in humans</title><title>Immunology and cell biology</title><description>Schistosomiasis is a widespread helminth disease that poses a heavy social and economic burden on people worldwide. Advanced schistosomiasis often develops into schistosome‐associated liver fibrosis, the pathogenesis of which remains unclear. This study aimed preliminarily to profile immune cells of schistosome‐associated liver fibrosis using single‐cell RNA sequencing. Three patient groups were enrolled, including an Schistosomiasis japonicum (SJ) group (n = 1), a chronic liver failure (CLF) group (n = 3) and a healthy control (HC) group (n = 2), revealing 17 cell clusters out of 20 093 cells. From these limited datasets, it was observed that T cell(1), mononuclear phagocytes‐1 and dendritic cells (DCs) were higher in the SJ group. CAVIN2+ MP(2) was the predominant cell type in the MP subset of the SJ group (53%), and was higher than that in both the CLF (8%) and HC (1%) groups. Kupffer cell marker genes (CD163, MARCO and TIMD4) were enriched in caveolae‐associated protein 2 (CAVIN2)+ MP(2), which was also an important source of TGFB1. The KEGG pathways of CAVIN2+ MP(2) indicated that they were associated with lysosome, endocytosis, phagosome and antigen processing and presentation. The preliminary study showed that granzyme B (GZMB)+ T cell(1) and ankyrin repeat domain‐containing protein 36B+ T cell(3) were the most common T cells in the SJ group (50% and 32%, respectively). The KEGG pathways of GZMB+ T cell(1) were mainly related to natural killer cell‐mediated cytotoxicity. The percentage of ring1 and YY1 binding protein (RYBP)+ DC(1) was higher in the SJ group (57%) than in the CLF (16%) and HC (6%) groups. The KEGG pathway of RYBP+ DC(1) was related to Fc gamma R‐mediated phagocytosis and antigen processing and presentation. Overall, CAVIN2+ Kupffer cells were the main source of TGFB1, consisting primarily of mononuclear phagocytes in the livers of the SJ group subjects and potentially playing an irreplaceable role in hepatic fibrosis of schistosomiasis.
The data in this study provide a reference map of the liver immune landscape of patients with schistosoma‐associated liver fibrosis.</description><subject>Ankyrins</subject><subject>Antigen presentation</subject><subject>Antigen processing</subject><subject>Antigens</subject><subject>Caveolae</subject><subject>CD163 antigen</subject><subject>Cytotoxicity</subject><subject>Dendritic cells</subject><subject>Endocytosis</subject><subject>Fibrosis</subject><subject>Granzyme B</subject><subject>Hepatocytes</subject><subject>Kupffer cells</subject><subject>Leukocytes (mononuclear)</subject><subject>Liver</subject><subject>Liver diseases</subject><subject>liver fibrosis</subject><subject>Lymphocytes</subject><subject>Lymphocytes T</subject><subject>MARCO protein</subject><subject>Natural killer cells</subject><subject>Outstanding Observation</subject><subject>Phagocytes</subject><subject>Phagocytosis</subject><subject>Proteins</subject><subject>Schistosomiasis</subject><subject>Schistosomiasis japonicum</subject><subject>single‐cell sequencing</subject><subject>Transforming growth factor-b1</subject><subject>YY1 protein</subject><issn>0818-9641</issn><issn>1440-1711</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>WIN</sourceid><recordid>eNp9kcFuFSEYhYnR2Gt14xOQuDEm0wIDDGxM2hurTWq6qWvCMP_00gxwhZlruvMRfEafpFxvY2IXsiGE7z_5zzkIvaXkhNZz6oPrTyjjmjxDK8o5aWhH6XO0IoqqRktOj9CrUu4IIR1T7Ut01PJWCEXJCqUzvM0w-eCjzffYxx2U2d_a2adYX3PC8wawD2GJgB1ME55sHIqzW8BpxMVtfJlTSQF-__xlS0nO2xkGPPkdZDz6PqfiS1XCmyXYWF6jF6OdCrx5vI_Rt4tPN-svzdX158v12VXjOBOkAQa809qOQowd4X3PB-haPbhxVN3goPoTWkohZCuJY0wDt4PgSkmglsmhPUYfD7rbpQ9QJ-Kc7WS22Yfq0yTrzb8_0W_MbdoZxYXUglWB948COX1faigm-LIPwEZISzFMCM1bTQmv6Lsn6F1acqz2KiUVUZJzVakPB8rVSEqG8e8ylJh9j2bfo_nTY4XpAf7hJ7j_D2kuv67PDzMPhmehzQ</recordid><startdate>202109</startdate><enddate>202109</enddate><creator>Zhang, Yu</creator><creator>Li, Junhui</creator><creator>Li, Hao</creator><creator>Zhou, Zhaoqin</creator><creator>Guo, Chen</creator><creator>Jiang, Jie</creator><creator>Ming, Yingzi</creator><general>Blackwell Science Ltd</general><general>John Wiley and Sons Inc</general><scope>24P</scope><scope>WIN</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>K9.</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>202109</creationdate><title>A preliminary investigation into the immune cell landscape of schistosome‐associated liver fibrosis in humans</title><author>Zhang, Yu ; Li, Junhui ; Li, Hao ; Zhou, Zhaoqin ; Guo, Chen ; Jiang, Jie ; Ming, Yingzi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4250-e2e4799af55f704bb4de739dcff87dce7115966556360c229e4ad54886e1a26d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Ankyrins</topic><topic>Antigen presentation</topic><topic>Antigen processing</topic><topic>Antigens</topic><topic>Caveolae</topic><topic>CD163 antigen</topic><topic>Cytotoxicity</topic><topic>Dendritic cells</topic><topic>Endocytosis</topic><topic>Fibrosis</topic><topic>Granzyme B</topic><topic>Hepatocytes</topic><topic>Kupffer cells</topic><topic>Leukocytes (mononuclear)</topic><topic>Liver</topic><topic>Liver diseases</topic><topic>liver fibrosis</topic><topic>Lymphocytes</topic><topic>Lymphocytes T</topic><topic>MARCO protein</topic><topic>Natural killer cells</topic><topic>Outstanding Observation</topic><topic>Phagocytes</topic><topic>Phagocytosis</topic><topic>Proteins</topic><topic>Schistosomiasis</topic><topic>Schistosomiasis japonicum</topic><topic>single‐cell sequencing</topic><topic>Transforming growth factor-b1</topic><topic>YY1 protein</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Yu</creatorcontrib><creatorcontrib>Li, Junhui</creatorcontrib><creatorcontrib>Li, Hao</creatorcontrib><creatorcontrib>Zhou, Zhaoqin</creatorcontrib><creatorcontrib>Guo, Chen</creatorcontrib><creatorcontrib>Jiang, Jie</creatorcontrib><creatorcontrib>Ming, Yingzi</creatorcontrib><collection>Wiley-Blackwell Open Access Titles</collection><collection>Wiley Free Content</collection><collection>CrossRef</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Immunology and cell biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Yu</au><au>Li, Junhui</au><au>Li, Hao</au><au>Zhou, Zhaoqin</au><au>Guo, Chen</au><au>Jiang, Jie</au><au>Ming, Yingzi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A preliminary investigation into the immune cell landscape of schistosome‐associated liver fibrosis in humans</atitle><jtitle>Immunology and cell biology</jtitle><date>2021-09</date><risdate>2021</risdate><volume>99</volume><issue>8</issue><spage>803</spage><epage>813</epage><pages>803-813</pages><issn>0818-9641</issn><eissn>1440-1711</eissn><abstract>Schistosomiasis is a widespread helminth disease that poses a heavy social and economic burden on people worldwide. Advanced schistosomiasis often develops into schistosome‐associated liver fibrosis, the pathogenesis of which remains unclear. This study aimed preliminarily to profile immune cells of schistosome‐associated liver fibrosis using single‐cell RNA sequencing. Three patient groups were enrolled, including an Schistosomiasis japonicum (SJ) group (n = 1), a chronic liver failure (CLF) group (n = 3) and a healthy control (HC) group (n = 2), revealing 17 cell clusters out of 20 093 cells. From these limited datasets, it was observed that T cell(1), mononuclear phagocytes‐1 and dendritic cells (DCs) were higher in the SJ group. CAVIN2+ MP(2) was the predominant cell type in the MP subset of the SJ group (53%), and was higher than that in both the CLF (8%) and HC (1%) groups. Kupffer cell marker genes (CD163, MARCO and TIMD4) were enriched in caveolae‐associated protein 2 (CAVIN2)+ MP(2), which was also an important source of TGFB1. The KEGG pathways of CAVIN2+ MP(2) indicated that they were associated with lysosome, endocytosis, phagosome and antigen processing and presentation. The preliminary study showed that granzyme B (GZMB)+ T cell(1) and ankyrin repeat domain‐containing protein 36B+ T cell(3) were the most common T cells in the SJ group (50% and 32%, respectively). The KEGG pathways of GZMB+ T cell(1) were mainly related to natural killer cell‐mediated cytotoxicity. The percentage of ring1 and YY1 binding protein (RYBP)+ DC(1) was higher in the SJ group (57%) than in the CLF (16%) and HC (6%) groups. The KEGG pathway of RYBP+ DC(1) was related to Fc gamma R‐mediated phagocytosis and antigen processing and presentation. Overall, CAVIN2+ Kupffer cells were the main source of TGFB1, consisting primarily of mononuclear phagocytes in the livers of the SJ group subjects and potentially playing an irreplaceable role in hepatic fibrosis of schistosomiasis.
The data in this study provide a reference map of the liver immune landscape of patients with schistosoma‐associated liver fibrosis.</abstract><cop>London</cop><pub>Blackwell Science Ltd</pub><pmid>34355810</pmid><doi>10.1111/imcb.12490</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Ankyrins Antigen presentation Antigen processing Antigens Caveolae CD163 antigen Cytotoxicity Dendritic cells Endocytosis Fibrosis Granzyme B Hepatocytes Kupffer cells Leukocytes (mononuclear) Liver Liver diseases liver fibrosis Lymphocytes Lymphocytes T MARCO protein Natural killer cells Outstanding Observation Phagocytes Phagocytosis Proteins Schistosomiasis Schistosomiasis japonicum single‐cell sequencing Transforming growth factor-b1 YY1 protein |
title | A preliminary investigation into the immune cell landscape of schistosome‐associated liver fibrosis in humans |
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