Human TBK1 deficiency leads to autoinflammation driven by TNF-induced cell death

TANK binding kinase 1 (TBK1) regulates IFN-I, NF-κB, and TNF-induced RIPK1-dependent cell death (RCD). In mice, biallelic loss of TBK1 is embryonically lethal. We discovered four humans, ages 32, 26, 7, and 8 from three unrelated consanguineous families with homozygous loss-of-function mutations in...

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Veröffentlicht in:Cell 2021-08, Vol.184 (17), p.4447-4463.e20
Hauptverfasser: Taft, Justin, Markson, Michael, Legarda, Diana, Patel, Roosheel, Chan, Mark, Malle, Louise, Richardson, Ashley, Gruber, Conor, Martín-Fernández, Marta, Mancini, Grazia M.S., van Laar, Jan A.M., van Pelt, Philomine, Buta, Sofija, Wokke, Beatrijs H.A., Sabli, Ira K.D., Sancho-Shimizu, Vanessa, Chavan, Pallavi Pimpale, Schnappauf, Oskar, Khubchandani, Raju, Cüceoğlu, Müşerref Kasap, Özen, Seza, Kastner, Daniel L., Ting, Adrian T., Aksentijevich, Ivona, Hollink, Iris H.I. M., Bogunovic, Dusan
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container_end_page 4463.e20
container_issue 17
container_start_page 4447
container_title Cell
container_volume 184
creator Taft, Justin
Markson, Michael
Legarda, Diana
Patel, Roosheel
Chan, Mark
Malle, Louise
Richardson, Ashley
Gruber, Conor
Martín-Fernández, Marta
Mancini, Grazia M.S.
van Laar, Jan A.M.
van Pelt, Philomine
Buta, Sofija
Wokke, Beatrijs H.A.
Sabli, Ira K.D.
Sancho-Shimizu, Vanessa
Chavan, Pallavi Pimpale
Schnappauf, Oskar
Khubchandani, Raju
Cüceoğlu, Müşerref Kasap
Özen, Seza
Kastner, Daniel L.
Ting, Adrian T.
Aksentijevich, Ivona
Hollink, Iris H.I. M.
Bogunovic, Dusan
description TANK binding kinase 1 (TBK1) regulates IFN-I, NF-κB, and TNF-induced RIPK1-dependent cell death (RCD). In mice, biallelic loss of TBK1 is embryonically lethal. We discovered four humans, ages 32, 26, 7, and 8 from three unrelated consanguineous families with homozygous loss-of-function mutations in TBK1. All four patients suffer from chronic and systemic autoinflammation, but not severe viral infections. We demonstrate that TBK1 loss results in hypomorphic but sufficient IFN-I induction via RIG-I/MDA5, while the system retains near intact IL-6 induction through NF-κB. Autoinflammation is driven by TNF-induced RCD as patient-derived fibroblasts experienced higher rates of necroptosis in vitro, and CC3 was elevated in peripheral blood ex vivo. Treatment with anti-TNF dampened the baseline circulating inflammatory profile and ameliorated the clinical condition in vivo. These findings highlight the plasticity of the IFN-I response and underscore a cardinal role for TBK1 in the regulation of RCD. [Display omitted] •Homozygous LoF TBK1 produces systemic autoinflammation, not overt viral disease.•Expressed but inactive TBK1 inhibits IFN-I induction more than no TBK1.•Autoinflammation is driven by TNF-induced cell death caused by dysregulated RIPK1.•Treatment with anti-TNF resolves clinical disease. TBK1 signals activation of antiviral defenses and controls TNF-mediated inflammation. Deletion of TBK1 in mice is embryonically lethal. Humans lacking TBK1 expression survive and have adequate antiviral function. Instead, these individuals suffer from inflammatory pathology driven by sensitivity to TNF-induced cell death that can be effectively treated with anti-TNF therapeutics.
doi_str_mv 10.1016/j.cell.2021.07.026
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M. ; Bogunovic, Dusan</creator><creatorcontrib>Taft, Justin ; Markson, Michael ; Legarda, Diana ; Patel, Roosheel ; Chan, Mark ; Malle, Louise ; Richardson, Ashley ; Gruber, Conor ; Martín-Fernández, Marta ; Mancini, Grazia M.S. ; van Laar, Jan A.M. ; van Pelt, Philomine ; Buta, Sofija ; Wokke, Beatrijs H.A. ; Sabli, Ira K.D. ; Sancho-Shimizu, Vanessa ; Chavan, Pallavi Pimpale ; Schnappauf, Oskar ; Khubchandani, Raju ; Cüceoğlu, Müşerref Kasap ; Özen, Seza ; Kastner, Daniel L. ; Ting, Adrian T. ; Aksentijevich, Ivona ; Hollink, Iris H.I. M. ; Bogunovic, Dusan</creatorcontrib><description>TANK binding kinase 1 (TBK1) regulates IFN-I, NF-κB, and TNF-induced RIPK1-dependent cell death (RCD). In mice, biallelic loss of TBK1 is embryonically lethal. We discovered four humans, ages 32, 26, 7, and 8 from three unrelated consanguineous families with homozygous loss-of-function mutations in TBK1. All four patients suffer from chronic and systemic autoinflammation, but not severe viral infections. We demonstrate that TBK1 loss results in hypomorphic but sufficient IFN-I induction via RIG-I/MDA5, while the system retains near intact IL-6 induction through NF-κB. Autoinflammation is driven by TNF-induced RCD as patient-derived fibroblasts experienced higher rates of necroptosis in vitro, and CC3 was elevated in peripheral blood ex vivo. Treatment with anti-TNF dampened the baseline circulating inflammatory profile and ameliorated the clinical condition in vivo. These findings highlight the plasticity of the IFN-I response and underscore a cardinal role for TBK1 in the regulation of RCD. [Display omitted] •Homozygous LoF TBK1 produces systemic autoinflammation, not overt viral disease.•Expressed but inactive TBK1 inhibits IFN-I induction more than no TBK1.•Autoinflammation is driven by TNF-induced cell death caused by dysregulated RIPK1.•Treatment with anti-TNF resolves clinical disease. TBK1 signals activation of antiviral defenses and controls TNF-mediated inflammation. Deletion of TBK1 in mice is embryonically lethal. Humans lacking TBK1 expression survive and have adequate antiviral function. Instead, these individuals suffer from inflammatory pathology driven by sensitivity to TNF-induced cell death that can be effectively treated with anti-TNF therapeutics.</description><identifier>ISSN: 0092-8674</identifier><identifier>EISSN: 1097-4172</identifier><identifier>DOI: 10.1016/j.cell.2021.07.026</identifier><identifier>PMID: 34363755</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>A549 Cells ; Adaptor Proteins, Signal Transducing - metabolism ; Apoptosis ; Autoimmunity - drug effects ; autoinflammation ; Brain - diagnostic imaging ; Cell Death - drug effects ; Cytokines - metabolism ; Deubiquitinating Enzyme CYLD - metabolism ; Female ; HEK293 Cells ; Homozygote ; Humans ; I-kappa B Kinase - metabolism ; IKKE ; Immunophenotyping ; Inflammation - enzymology ; Inflammation - pathology ; interferon type I ; Interferon Type I - metabolism ; Interferon-gamma - metabolism ; IRF3 ; Loss of Function Mutation - genetics ; Male ; Pedigree ; Phosphorylation - drug effects ; Protein Serine-Threonine Kinases - deficiency ; Protein Serine-Threonine Kinases - genetics ; Protein Serine-Threonine Kinases - metabolism ; Receptor-Interacting Protein Serine-Threonine Kinases - metabolism ; Receptors, Pattern Recognition - metabolism ; RIPK1 ; TBK1 deficiency ; TNF alpha ; Toll-Like Receptor 3 - metabolism ; Transcriptome - genetics ; Tumor Necrosis Factor-alpha - pharmacology ; Vesiculovirus - drug effects ; Vesiculovirus - physiology ; viral susceptibility</subject><ispartof>Cell, 2021-08, Vol.184 (17), p.4447-4463.e20</ispartof><rights>2021 Elsevier Inc.</rights><rights>Copyright © 2021 Elsevier Inc. 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M.</creatorcontrib><creatorcontrib>Bogunovic, Dusan</creatorcontrib><title>Human TBK1 deficiency leads to autoinflammation driven by TNF-induced cell death</title><title>Cell</title><addtitle>Cell</addtitle><description>TANK binding kinase 1 (TBK1) regulates IFN-I, NF-κB, and TNF-induced RIPK1-dependent cell death (RCD). In mice, biallelic loss of TBK1 is embryonically lethal. We discovered four humans, ages 32, 26, 7, and 8 from three unrelated consanguineous families with homozygous loss-of-function mutations in TBK1. All four patients suffer from chronic and systemic autoinflammation, but not severe viral infections. We demonstrate that TBK1 loss results in hypomorphic but sufficient IFN-I induction via RIG-I/MDA5, while the system retains near intact IL-6 induction through NF-κB. Autoinflammation is driven by TNF-induced RCD as patient-derived fibroblasts experienced higher rates of necroptosis in vitro, and CC3 was elevated in peripheral blood ex vivo. Treatment with anti-TNF dampened the baseline circulating inflammatory profile and ameliorated the clinical condition in vivo. These findings highlight the plasticity of the IFN-I response and underscore a cardinal role for TBK1 in the regulation of RCD. [Display omitted] •Homozygous LoF TBK1 produces systemic autoinflammation, not overt viral disease.•Expressed but inactive TBK1 inhibits IFN-I induction more than no TBK1.•Autoinflammation is driven by TNF-induced cell death caused by dysregulated RIPK1.•Treatment with anti-TNF resolves clinical disease. TBK1 signals activation of antiviral defenses and controls TNF-mediated inflammation. Deletion of TBK1 in mice is embryonically lethal. Humans lacking TBK1 expression survive and have adequate antiviral function. Instead, these individuals suffer from inflammatory pathology driven by sensitivity to TNF-induced cell death that can be effectively treated with anti-TNF therapeutics.</description><subject>A549 Cells</subject><subject>Adaptor Proteins, Signal Transducing - metabolism</subject><subject>Apoptosis</subject><subject>Autoimmunity - drug effects</subject><subject>autoinflammation</subject><subject>Brain - diagnostic imaging</subject><subject>Cell Death - drug effects</subject><subject>Cytokines - metabolism</subject><subject>Deubiquitinating Enzyme CYLD - metabolism</subject><subject>Female</subject><subject>HEK293 Cells</subject><subject>Homozygote</subject><subject>Humans</subject><subject>I-kappa B Kinase - metabolism</subject><subject>IKKE</subject><subject>Immunophenotyping</subject><subject>Inflammation - enzymology</subject><subject>Inflammation - pathology</subject><subject>interferon type I</subject><subject>Interferon Type I - metabolism</subject><subject>Interferon-gamma - metabolism</subject><subject>IRF3</subject><subject>Loss of Function Mutation - genetics</subject><subject>Male</subject><subject>Pedigree</subject><subject>Phosphorylation - drug effects</subject><subject>Protein Serine-Threonine Kinases - deficiency</subject><subject>Protein Serine-Threonine Kinases - genetics</subject><subject>Protein Serine-Threonine Kinases - metabolism</subject><subject>Receptor-Interacting Protein Serine-Threonine Kinases - metabolism</subject><subject>Receptors, Pattern Recognition - metabolism</subject><subject>RIPK1</subject><subject>TBK1 deficiency</subject><subject>TNF alpha</subject><subject>Toll-Like Receptor 3 - metabolism</subject><subject>Transcriptome - genetics</subject><subject>Tumor Necrosis Factor-alpha - pharmacology</subject><subject>Vesiculovirus - drug effects</subject><subject>Vesiculovirus - physiology</subject><subject>viral susceptibility</subject><issn>0092-8674</issn><issn>1097-4172</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9UU1v1DAUtBCILoU_wAH5yCXh2fGnhJBoRSmiAg7L2fLaL9SrJC5xstL-exK2VHDh9A5vZt68GUJeMqgZMPVmXwfsupoDZzXoGrh6RDYMrK4E0_wx2QBYXhmlxRl5VsoeAIyU8ik5a0SjGi3lhny7nns_0O3FZ0YjtikkHMKRduhjoVOmfp5yGtrO972fUh5oHNMBB7o70u2XqyoNcQ4Y6Wpk4fvp9jl50vqu4Iv7eU6-X33YXl5XN18_frp8f1MFIeVUeWZEI0RA1ahWtGBRgQXgII1gnO-U1TbaHbbMYmx1q4XxAhWPMhgTFv_n5N1J927e9RgDDtPoO3c3pt6PR5d9cv9uhnTrfuSDM40BLdgi8PpeYMw_ZyyT61NZ__AD5rk4LqUVXDIwC5SfoGHMpYzYPpxh4NYq3N6tTLdW4UC7pYqF9Opvgw-UP9kvgLcnAC4xHRKOrvxOH2MaMUwu5vQ__V_-DJpM</recordid><startdate>20210819</startdate><enddate>20210819</enddate><creator>Taft, Justin</creator><creator>Markson, Michael</creator><creator>Legarda, Diana</creator><creator>Patel, Roosheel</creator><creator>Chan, Mark</creator><creator>Malle, Louise</creator><creator>Richardson, Ashley</creator><creator>Gruber, Conor</creator><creator>Martín-Fernández, Marta</creator><creator>Mancini, Grazia M.S.</creator><creator>van Laar, Jan A.M.</creator><creator>van Pelt, Philomine</creator><creator>Buta, Sofija</creator><creator>Wokke, Beatrijs H.A.</creator><creator>Sabli, Ira K.D.</creator><creator>Sancho-Shimizu, Vanessa</creator><creator>Chavan, Pallavi Pimpale</creator><creator>Schnappauf, Oskar</creator><creator>Khubchandani, Raju</creator><creator>Cüceoğlu, Müşerref Kasap</creator><creator>Özen, Seza</creator><creator>Kastner, Daniel L.</creator><creator>Ting, Adrian T.</creator><creator>Aksentijevich, Ivona</creator><creator>Hollink, Iris H.I. 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M.</au><au>Bogunovic, Dusan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Human TBK1 deficiency leads to autoinflammation driven by TNF-induced cell death</atitle><jtitle>Cell</jtitle><addtitle>Cell</addtitle><date>2021-08-19</date><risdate>2021</risdate><volume>184</volume><issue>17</issue><spage>4447</spage><epage>4463.e20</epage><pages>4447-4463.e20</pages><issn>0092-8674</issn><eissn>1097-4172</eissn><abstract>TANK binding kinase 1 (TBK1) regulates IFN-I, NF-κB, and TNF-induced RIPK1-dependent cell death (RCD). In mice, biallelic loss of TBK1 is embryonically lethal. We discovered four humans, ages 32, 26, 7, and 8 from three unrelated consanguineous families with homozygous loss-of-function mutations in TBK1. All four patients suffer from chronic and systemic autoinflammation, but not severe viral infections. We demonstrate that TBK1 loss results in hypomorphic but sufficient IFN-I induction via RIG-I/MDA5, while the system retains near intact IL-6 induction through NF-κB. Autoinflammation is driven by TNF-induced RCD as patient-derived fibroblasts experienced higher rates of necroptosis in vitro, and CC3 was elevated in peripheral blood ex vivo. Treatment with anti-TNF dampened the baseline circulating inflammatory profile and ameliorated the clinical condition in vivo. These findings highlight the plasticity of the IFN-I response and underscore a cardinal role for TBK1 in the regulation of RCD. [Display omitted] •Homozygous LoF TBK1 produces systemic autoinflammation, not overt viral disease.•Expressed but inactive TBK1 inhibits IFN-I induction more than no TBK1.•Autoinflammation is driven by TNF-induced cell death caused by dysregulated RIPK1.•Treatment with anti-TNF resolves clinical disease. TBK1 signals activation of antiviral defenses and controls TNF-mediated inflammation. Deletion of TBK1 in mice is embryonically lethal. Humans lacking TBK1 expression survive and have adequate antiviral function. Instead, these individuals suffer from inflammatory pathology driven by sensitivity to TNF-induced cell death that can be effectively treated with anti-TNF therapeutics.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>34363755</pmid><doi>10.1016/j.cell.2021.07.026</doi><orcidid>https://orcid.org/0000-0001-8880-3534</orcidid><orcidid>https://orcid.org/0000-0002-5124-6559</orcidid><orcidid>https://orcid.org/0000-0003-0653-9923</orcidid><orcidid>https://orcid.org/0000-0001-5360-6864</orcidid><orcidid>https://orcid.org/0000-0001-9284-1680</orcidid><orcidid>https://orcid.org/0000-0003-0294-119X</orcidid><oa>free_for_read</oa></addata></record>
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source MEDLINE; Cell Press Free Archives; Access via ScienceDirect (Elsevier); EZB-FREE-00999 freely available EZB journals
subjects A549 Cells
Adaptor Proteins, Signal Transducing - metabolism
Apoptosis
Autoimmunity - drug effects
autoinflammation
Brain - diagnostic imaging
Cell Death - drug effects
Cytokines - metabolism
Deubiquitinating Enzyme CYLD - metabolism
Female
HEK293 Cells
Homozygote
Humans
I-kappa B Kinase - metabolism
IKKE
Immunophenotyping
Inflammation - enzymology
Inflammation - pathology
interferon type I
Interferon Type I - metabolism
Interferon-gamma - metabolism
IRF3
Loss of Function Mutation - genetics
Male
Pedigree
Phosphorylation - drug effects
Protein Serine-Threonine Kinases - deficiency
Protein Serine-Threonine Kinases - genetics
Protein Serine-Threonine Kinases - metabolism
Receptor-Interacting Protein Serine-Threonine Kinases - metabolism
Receptors, Pattern Recognition - metabolism
RIPK1
TBK1 deficiency
TNF alpha
Toll-Like Receptor 3 - metabolism
Transcriptome - genetics
Tumor Necrosis Factor-alpha - pharmacology
Vesiculovirus - drug effects
Vesiculovirus - physiology
viral susceptibility
title Human TBK1 deficiency leads to autoinflammation driven by TNF-induced cell death
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