Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis
The genera (family ' ') and (family ) are close relatives within the phylum . Members of these genera are strictly anaerobic, non-spore-forming and short straight rods with diverse phenotypes. Phylogenetic analysis of 16S rRNA genes suggest that splits into a polyphyletic clade. In an effo...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2021-04, Vol.71 (4) |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Liu, Xiaoying Sutter, Jessica L de la Cuesta-Zuluaga, Jacobo Waters, Jillian L Youngblut, Nicholas D Ley, Ruth E |
| description | The genera
(family '
') and
(family
) are close relatives within the phylum
. Members of these genera are strictly anaerobic, non-spore-forming and short straight rods with diverse phenotypes. Phylogenetic analysis of 16S rRNA genes suggest that
splits
into a polyphyletic clade. In an effort to ensure that family/genus names represent monophyletic clades, we performed a whole-genome based analysis of the genomes available for the cultured representatives of these genera: four species of
and two strains of
. A concatenated alignment of 135 shared protein sequences of single-copy core genes present in the included strains indicates that
is indeed nested within the
clade. Based on their evolutionary relationship, we propose the transfer of
to the genus
as
comb. nov. |
| doi_str_mv | 10.1099/ijsem.0.004774 |
| format | Article |
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(family '
') and
(family
) are close relatives within the phylum
. Members of these genera are strictly anaerobic, non-spore-forming and short straight rods with diverse phenotypes. Phylogenetic analysis of 16S rRNA genes suggest that
splits
into a polyphyletic clade. In an effort to ensure that family/genus names represent monophyletic clades, we performed a whole-genome based analysis of the genomes available for the cultured representatives of these genera: four species of
and two strains of
. A concatenated alignment of 135 shared protein sequences of single-copy core genes present in the included strains indicates that
is indeed nested within the
clade. Based on their evolutionary relationship, we propose the transfer of
to the genus
as
comb. nov.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.004774</identifier><identifier>PMID: 33881979</identifier><language>eng</language><publisher>England: Microbiology Society</publisher><subject>Bacterial Typing Techniques ; Clostridiales - classification ; Genome, Bacterial ; Gram-Positive Rods - classification ; New Taxa ; Phylogeny</subject><ispartof>International journal of systematic and evolutionary microbiology, 2021-04, Vol.71 (4)</ispartof><rights>2021 The Authors 2021</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c390t-6ee2a68965991ff435a98009eefe5acf7cdc09b9aaa5896e923ee02d22bf06913</citedby><cites>FETCH-LOGICAL-c390t-6ee2a68965991ff435a98009eefe5acf7cdc09b9aaa5896e923ee02d22bf06913</cites><orcidid>0000-0002-4460-1591 ; 0000-0002-7369-992X ; 0000-0002-7424-5276 ; 0000-0002-9087-1672</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,776,780,881,3733,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33881979$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Liu, Xiaoying</creatorcontrib><creatorcontrib>Sutter, Jessica L</creatorcontrib><creatorcontrib>de la Cuesta-Zuluaga, Jacobo</creatorcontrib><creatorcontrib>Waters, Jillian L</creatorcontrib><creatorcontrib>Youngblut, Nicholas D</creatorcontrib><creatorcontrib>Ley, Ruth E</creatorcontrib><title>Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>The genera
(family '
') and
(family
) are close relatives within the phylum
. Members of these genera are strictly anaerobic, non-spore-forming and short straight rods with diverse phenotypes. Phylogenetic analysis of 16S rRNA genes suggest that
splits
into a polyphyletic clade. In an effort to ensure that family/genus names represent monophyletic clades, we performed a whole-genome based analysis of the genomes available for the cultured representatives of these genera: four species of
and two strains of
. A concatenated alignment of 135 shared protein sequences of single-copy core genes present in the included strains indicates that
is indeed nested within the
clade. Based on their evolutionary relationship, we propose the transfer of
to the genus
as
comb. nov.</description><subject>Bacterial Typing Techniques</subject><subject>Clostridiales - classification</subject><subject>Genome, Bacterial</subject><subject>Gram-Positive Rods - classification</subject><subject>New Taxa</subject><subject>Phylogeny</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdkU1P4zAQhi3Eiu8rR-Qjl4axk7jxBQlV7IKEtNJq92xN3HFrSGyIUxD_HkNLBXsYzXj8-J2xXsZOBRQCtL7w94n6AgqAajqtdtiBqJSa1FBWu9taqn12mNI9QG4A7LH9smwaoaf6gL38IdthSt55i6OPgUfHZzhii3akgS9jWDzkoJB84pj4bDn4NOYjBeo6_A-wsW8LHuJzwVtMNOdZ8GUZO-IZiD1xDNi9ZvKY_XDYJTrZ5CP27-f139nN5O73r9vZ1d3ElhrGiSKSqBqtaq2Fc1VZo24ANJGjGq2b2rkF3WpErDNFWpZEIOdStg6UFuURu1zrPq7anuaWwjhgZx4H3-PwaiJ68_0m-KVZxGfTyEZLobLA-UZgiE8rSqPpfbLvXw8UV8nIWqimEpWEjBZr1A4xpYHcdowA8-6W-XDLgFm7lR-cfV1ui3_aU74BAkeVmg</recordid><startdate>202104</startdate><enddate>202104</enddate><creator>Liu, Xiaoying</creator><creator>Sutter, Jessica L</creator><creator>de la Cuesta-Zuluaga, Jacobo</creator><creator>Waters, Jillian L</creator><creator>Youngblut, Nicholas D</creator><creator>Ley, Ruth E</creator><general>Microbiology Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-4460-1591</orcidid><orcidid>https://orcid.org/0000-0002-7369-992X</orcidid><orcidid>https://orcid.org/0000-0002-7424-5276</orcidid><orcidid>https://orcid.org/0000-0002-9087-1672</orcidid></search><sort><creationdate>202104</creationdate><title>Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis</title><author>Liu, Xiaoying ; Sutter, Jessica L ; de la Cuesta-Zuluaga, Jacobo ; Waters, Jillian L ; Youngblut, Nicholas D ; Ley, Ruth E</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c390t-6ee2a68965991ff435a98009eefe5acf7cdc09b9aaa5896e923ee02d22bf06913</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Bacterial Typing Techniques</topic><topic>Clostridiales - classification</topic><topic>Genome, Bacterial</topic><topic>Gram-Positive Rods - classification</topic><topic>New Taxa</topic><topic>Phylogeny</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liu, Xiaoying</creatorcontrib><creatorcontrib>Sutter, Jessica L</creatorcontrib><creatorcontrib>de la Cuesta-Zuluaga, Jacobo</creatorcontrib><creatorcontrib>Waters, Jillian L</creatorcontrib><creatorcontrib>Youngblut, Nicholas D</creatorcontrib><creatorcontrib>Ley, Ruth E</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Liu, Xiaoying</au><au>Sutter, Jessica L</au><au>de la Cuesta-Zuluaga, Jacobo</au><au>Waters, Jillian L</au><au>Youngblut, Nicholas D</au><au>Ley, Ruth E</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2021-04</date><risdate>2021</risdate><volume>71</volume><issue>4</issue><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>The genera
(family '
') and
(family
) are close relatives within the phylum
. Members of these genera are strictly anaerobic, non-spore-forming and short straight rods with diverse phenotypes. Phylogenetic analysis of 16S rRNA genes suggest that
splits
into a polyphyletic clade. In an effort to ensure that family/genus names represent monophyletic clades, we performed a whole-genome based analysis of the genomes available for the cultured representatives of these genera: four species of
and two strains of
. A concatenated alignment of 135 shared protein sequences of single-copy core genes present in the included strains indicates that
is indeed nested within the
clade. Based on their evolutionary relationship, we propose the transfer of
to the genus
as
comb. nov.</abstract><cop>England</cop><pub>Microbiology Society</pub><pmid>33881979</pmid><doi>10.1099/ijsem.0.004774</doi><orcidid>https://orcid.org/0000-0002-4460-1591</orcidid><orcidid>https://orcid.org/0000-0002-7369-992X</orcidid><orcidid>https://orcid.org/0000-0002-7424-5276</orcidid><orcidid>https://orcid.org/0000-0002-9087-1672</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
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| ispartof | International journal of systematic and evolutionary microbiology, 2021-04, Vol.71 (4) |
| issn | 1466-5026 1466-5034 |
| language | eng |
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| source | MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Bacterial Typing Techniques Clostridiales - classification Genome, Bacterial Gram-Positive Rods - classification New Taxa Phylogeny |
| title | Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis |
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