Seasonal Variation of Microbial Diversity of Coastal Sediment in Tongyeong, South Korea, Using 16S rRNA Gene Amplicon Sequencing

Seasonal Variation of Microbial Diversity of Coastal Sediment in Tongyeong, South Korea, Using 16S rRNA Gene Amplicon Sequencing

Benthic microbial diversity in Tongyeong, South Korea, was analyzed using next-generation sequencing of the 16S rRNA genes, to reveal the effects of seasonal variations on the microbial community in sediment. Proteobacteria was the dominant phylum, with a relative abundance of 61.5 to 68.1%.

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Microbiology resource announcements 2021-07, Vol.10 (27), p.e0044621-e0044621
Hauptverfasser: Oktavitri, Nur Indradewi, Kim, Jong-Oh, Kim, Kyunghoi
Format: Artikel
Sprache:eng
Schlagworte:
Amplicon Sequence Collections
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page e0044621
container_issue 27
container_start_page e0044621
container_title Microbiology resource announcements
container_volume 10
creator Oktavitri, Nur Indradewi
Kim, Jong-Oh
Kim, Kyunghoi
description Benthic microbial diversity in Tongyeong, South Korea, was analyzed using next-generation sequencing of the 16S rRNA genes, to reveal the effects of seasonal variations on the microbial community in sediment. Proteobacteria was the dominant phylum, with a relative abundance of 61.5 to 68.1%.
doi_str_mv 10.1128/MRA.00446-21
format Article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8265228</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2549689817</sourcerecordid><originalsourceid>FETCH-LOGICAL-a395t-454735b2051668830a4e7e6c0f8ed6e48b1e308083b99d99eae533763196bda63</originalsourceid><addsrcrecordid>eNptkV9LHDEUxUNRqqhv_QB5rLCj-TeZ5KWwbFtb1BYcLb6FzMzdNTKTbJMZYd_60RtdEQVfcsO5P8693IPQJ0pOKGXq9PJqfkKIELJg9APaZ2UlC6LV7c6r_x46SumeEMKIUFryj2iPC8Yl43Qf_avBpuBtj__Y6OzogsdhiS9dG0PjsvzVPUBMbtw8yotg05jFGjo3gB-x8_g6-NUG8jPDdZjGO3weItgZvknOrzCVNY5Xv-b4DDzg-bDuXZtH1PB3At9m4hDtLm2f4Oi5HqCb79-uFz-Ki99nPxfzi8JyXY6FKEXFy4aRkkqpFCdWQAWyJUsFnQShGgqcKKJ4o3WnNVgoOa8kp1o2nZX8AH3Z-q6nZoCuzdtH25t1dIONGxOsM2873t2ZVXgwismSMZUNPj8bxJCXT6MZXGqh762HMCXDSqGl0opWGZ1t0XzElCIsX8ZQYh5zMzk385SbYTTjx1vcpoGZ-zDFnEd6n_0Pys-WOA</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2549689817</pqid></control><display><type>article</type><title>Seasonal Variation of Microbial Diversity of Coastal Sediment in Tongyeong, South Korea, Using 16S rRNA Gene Amplicon Sequencing</title><source>PubMed Central</source><creator>Oktavitri, Nur Indradewi ; Kim, Jong-Oh ; Kim, Kyunghoi</creator><contributor>Stewart, Frank J ; Stewart, Frank J.</contributor><creatorcontrib>Oktavitri, Nur Indradewi ; Kim, Jong-Oh ; Kim, Kyunghoi ; Stewart, Frank J ; Stewart, Frank J.</creatorcontrib><description>Benthic microbial diversity in Tongyeong, South Korea, was analyzed using next-generation sequencing of the 16S rRNA genes, to reveal the effects of seasonal variations on the microbial community in sediment. Proteobacteria was the dominant phylum, with a relative abundance of 61.5 to 68.1%.</description><identifier>ISSN: 2576-098X</identifier><identifier>EISSN: 2576-098X</identifier><identifier>DOI: 10.1128/MRA.00446-21</identifier><identifier>PMID: 34236231</identifier><language>eng</language><publisher>1752 N St., N.W., Washington, DC: American Society for Microbiology</publisher><subject>Amplicon Sequence Collections</subject><ispartof>Microbiology resource announcements, 2021-07, Vol.10 (27), p.e0044621-e0044621</ispartof><rights>Copyright © 2021 Oktavitri et al.</rights><rights>Copyright © 2021 Oktavitri et al. 2021 Oktavitri et al.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a395t-454735b2051668830a4e7e6c0f8ed6e48b1e308083b99d99eae533763196bda63</citedby><cites>FETCH-LOGICAL-a395t-454735b2051668830a4e7e6c0f8ed6e48b1e308083b99d99eae533763196bda63</cites><orcidid>0000-0003-3689-3616 ; 0000-0003-2447-9856</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8265228/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8265228/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids></links><search><contributor>Stewart, Frank J</contributor><contributor>Stewart, Frank J.</contributor><creatorcontrib>Oktavitri, Nur Indradewi</creatorcontrib><creatorcontrib>Kim, Jong-Oh</creatorcontrib><creatorcontrib>Kim, Kyunghoi</creatorcontrib><title>Seasonal Variation of Microbial Diversity of Coastal Sediment in Tongyeong, South Korea, Using 16S rRNA Gene Amplicon Sequencing</title><title>Microbiology resource announcements</title><addtitle>Microbiol Resour Announc</addtitle><description>Benthic microbial diversity in Tongyeong, South Korea, was analyzed using next-generation sequencing of the 16S rRNA genes, to reveal the effects of seasonal variations on the microbial community in sediment. Proteobacteria was the dominant phylum, with a relative abundance of 61.5 to 68.1%.</description><subject>Amplicon Sequence Collections</subject><issn>2576-098X</issn><issn>2576-098X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNptkV9LHDEUxUNRqqhv_QB5rLCj-TeZ5KWwbFtb1BYcLb6FzMzdNTKTbJMZYd_60RtdEQVfcsO5P8693IPQJ0pOKGXq9PJqfkKIELJg9APaZ2UlC6LV7c6r_x46SumeEMKIUFryj2iPC8Yl43Qf_avBpuBtj__Y6OzogsdhiS9dG0PjsvzVPUBMbtw8yotg05jFGjo3gB-x8_g6-NUG8jPDdZjGO3weItgZvknOrzCVNY5Xv-b4DDzg-bDuXZtH1PB3At9m4hDtLm2f4Oi5HqCb79-uFz-Ki99nPxfzi8JyXY6FKEXFy4aRkkqpFCdWQAWyJUsFnQShGgqcKKJ4o3WnNVgoOa8kp1o2nZX8AH3Z-q6nZoCuzdtH25t1dIONGxOsM2873t2ZVXgwismSMZUNPj8bxJCXT6MZXGqh762HMCXDSqGl0opWGZ1t0XzElCIsX8ZQYh5zMzk385SbYTTjx1vcpoGZ-zDFnEd6n_0Pys-WOA</recordid><startdate>20210708</startdate><enddate>20210708</enddate><creator>Oktavitri, Nur Indradewi</creator><creator>Kim, Jong-Oh</creator><creator>Kim, Kyunghoi</creator><general>American Society for Microbiology</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-3689-3616</orcidid><orcidid>https://orcid.org/0000-0003-2447-9856</orcidid></search><sort><creationdate>20210708</creationdate><title>Seasonal Variation of Microbial Diversity of Coastal Sediment in Tongyeong, South Korea, Using 16S rRNA Gene Amplicon Sequencing</title><author>Oktavitri, Nur Indradewi ; Kim, Jong-Oh ; Kim, Kyunghoi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a395t-454735b2051668830a4e7e6c0f8ed6e48b1e308083b99d99eae533763196bda63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Amplicon Sequence Collections</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Oktavitri, Nur Indradewi</creatorcontrib><creatorcontrib>Kim, Jong-Oh</creatorcontrib><creatorcontrib>Kim, Kyunghoi</creatorcontrib><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Microbiology resource announcements</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Oktavitri, Nur Indradewi</au><au>Kim, Jong-Oh</au><au>Kim, Kyunghoi</au><au>Stewart, Frank J</au><au>Stewart, Frank J.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Seasonal Variation of Microbial Diversity of Coastal Sediment in Tongyeong, South Korea, Using 16S rRNA Gene Amplicon Sequencing</atitle><jtitle>Microbiology resource announcements</jtitle><stitle>Microbiol Resour Announc</stitle><date>2021-07-08</date><risdate>2021</risdate><volume>10</volume><issue>27</issue><spage>e0044621</spage><epage>e0044621</epage><pages>e0044621-e0044621</pages><issn>2576-098X</issn><eissn>2576-098X</eissn><abstract>Benthic microbial diversity in Tongyeong, South Korea, was analyzed using next-generation sequencing of the 16S rRNA genes, to reveal the effects of seasonal variations on the microbial community in sediment. Proteobacteria was the dominant phylum, with a relative abundance of 61.5 to 68.1%.</abstract><cop>1752 N St., N.W., Washington, DC</cop><pub>American Society for Microbiology</pub><pmid>34236231</pmid><doi>10.1128/MRA.00446-21</doi><tpages>3</tpages><orcidid>https://orcid.org/0000-0003-3689-3616</orcidid><orcidid>https://orcid.org/0000-0003-2447-9856</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 2576-098X
ispartof Microbiology resource announcements, 2021-07, Vol.10 (27), p.e0044621-e0044621
issn 2576-098X
2576-098X
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8265228
source PubMed Central
subjects Amplicon Sequence Collections
title Seasonal Variation of Microbial Diversity of Coastal Sediment in Tongyeong, South Korea, Using 16S rRNA Gene Amplicon Sequencing
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-30T16%3A40%3A16IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Seasonal%20Variation%20of%20Microbial%20Diversity%20of%20Coastal%20Sediment%20in%20Tongyeong,%20South%20Korea,%20Using%2016S%20rRNA%20Gene%20Amplicon%20Sequencing&rft.jtitle=Microbiology%20resource%20announcements&rft.au=Oktavitri,%20Nur%20Indradewi&rft.date=2021-07-08&rft.volume=10&rft.issue=27&rft.spage=e0044621&rft.epage=e0044621&rft.pages=e0044621-e0044621&rft.issn=2576-098X&rft.eissn=2576-098X&rft_id=info:doi/10.1128/MRA.00446-21&rft_dat=%3Cproquest_pubme%3E2549689817%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2549689817&rft_id=info:pmid/34236231&rfr_iscdi=true