Resonant Soft X-Ray Scattering Provides Protein Structure with Chemical Specificity
We introduce resonant soft X-ray scattering (RSoXS) as an approach to study the structure of proteins and other biological molecules in solution. Scattering contrast calculations suggest that RSoXS has comparable or even higher sensitivity than hard X-ray scattering because of contrast generated at...
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Veröffentlicht in: | Structure (London) 2018-11, Vol.26 (11), p.1513-1521.e3 |
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creator | Ye, Dan Le, Thinh P. Kuei, Brooke Zhu, Chenhui Zwart, Peter H. Wang, Cheng Gomez, Enrique D. Gomez, Esther W. |
description | We introduce resonant soft X-ray scattering (RSoXS) as an approach to study the structure of proteins and other biological molecules in solution. Scattering contrast calculations suggest that RSoXS has comparable or even higher sensitivity than hard X-ray scattering because of contrast generated at the absorption edges of constituent elements, such as carbon and oxygen. Here, we demonstrate that working near the carbon edge reveals the envelope function of bovine serum albumin, using scattering volumes of 10−5 μL that are multiple orders of magnitude lower than traditional scattering experiments. Furthermore, tuning the X-ray energy within the carbon absorption edge provides different signatures of the size and shape of the protein by revealing the density of different types of bonding motifs within the protein. The combination of chemical specificity, smaller sample size, and enhanced X-ray contrast will propel RSoXS as a complementary tool to existing techniques for the study of biomolecular structure.
[Display omitted]
•Soft X-ray scattering provides structural information with chemical specificity•Scattering in the soft X-ray regime enhances contrast by orders of magnitude•Reconciling scattering at various energies leads to refined structural models•Radiation damage is mitigated in the soft X-ray regime
Ye et al. demonstrate resonant soft X-ray scattering as a tool to examine the shape and size of proteins in solution. Working at X-ray absorption edges provides an opportunity to selectively highlight structure associated with specific chemistries, thereby establishing a promising technique for the study of complex biological assemblies. |
doi_str_mv | 10.1016/j.str.2018.07.018 |
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[Display omitted]
•Soft X-ray scattering provides structural information with chemical specificity•Scattering in the soft X-ray regime enhances contrast by orders of magnitude•Reconciling scattering at various energies leads to refined structural models•Radiation damage is mitigated in the soft X-ray regime
Ye et al. demonstrate resonant soft X-ray scattering as a tool to examine the shape and size of proteins in solution. Working at X-ray absorption edges provides an opportunity to selectively highlight structure associated with specific chemistries, thereby establishing a promising technique for the study of complex biological assemblies.</description><identifier>ISSN: 0969-2126</identifier><identifier>EISSN: 1878-4186</identifier><identifier>DOI: 10.1016/j.str.2018.07.018</identifier><identifier>PMID: 30220541</identifier><language>eng</language><publisher>United States: Elsevier Ltd</publisher><subject>Animals ; Cattle ; envelope function ; Models, Molecular ; NEXAFS ; Protein Conformation ; protein structure ; RSoXS ; SAXS ; Serum Albumin, Bovine - chemistry ; small-angle scattering ; soft X-rays ; X-Ray Diffraction - methods</subject><ispartof>Structure (London), 2018-11, Vol.26 (11), p.1513-1521.e3</ispartof><rights>2018 Elsevier Ltd</rights><rights>Copyright © 2018 Elsevier Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c478t-b70ade7117c8f027c86166191c107478dd3533dcffb3a77cc0b937102d32c8a83</citedby><cites>FETCH-LOGICAL-c478t-b70ade7117c8f027c86166191c107478dd3533dcffb3a77cc0b937102d32c8a83</cites><orcidid>0000-0001-8942-4480 ; 0000000189424480</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.str.2018.07.018$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>230,314,780,784,885,3550,27924,27925,45995</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30220541$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/biblio/1573258$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Ye, Dan</creatorcontrib><creatorcontrib>Le, Thinh P.</creatorcontrib><creatorcontrib>Kuei, Brooke</creatorcontrib><creatorcontrib>Zhu, Chenhui</creatorcontrib><creatorcontrib>Zwart, Peter H.</creatorcontrib><creatorcontrib>Wang, Cheng</creatorcontrib><creatorcontrib>Gomez, Enrique D.</creatorcontrib><creatorcontrib>Gomez, Esther W.</creatorcontrib><creatorcontrib>Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)</creatorcontrib><title>Resonant Soft X-Ray Scattering Provides Protein Structure with Chemical Specificity</title><title>Structure (London)</title><addtitle>Structure</addtitle><description>We introduce resonant soft X-ray scattering (RSoXS) as an approach to study the structure of proteins and other biological molecules in solution. Scattering contrast calculations suggest that RSoXS has comparable or even higher sensitivity than hard X-ray scattering because of contrast generated at the absorption edges of constituent elements, such as carbon and oxygen. Here, we demonstrate that working near the carbon edge reveals the envelope function of bovine serum albumin, using scattering volumes of 10−5 μL that are multiple orders of magnitude lower than traditional scattering experiments. Furthermore, tuning the X-ray energy within the carbon absorption edge provides different signatures of the size and shape of the protein by revealing the density of different types of bonding motifs within the protein. The combination of chemical specificity, smaller sample size, and enhanced X-ray contrast will propel RSoXS as a complementary tool to existing techniques for the study of biomolecular structure.
[Display omitted]
•Soft X-ray scattering provides structural information with chemical specificity•Scattering in the soft X-ray regime enhances contrast by orders of magnitude•Reconciling scattering at various energies leads to refined structural models•Radiation damage is mitigated in the soft X-ray regime
Ye et al. demonstrate resonant soft X-ray scattering as a tool to examine the shape and size of proteins in solution. Working at X-ray absorption edges provides an opportunity to selectively highlight structure associated with specific chemistries, thereby establishing a promising technique for the study of complex biological assemblies.</description><subject>Animals</subject><subject>Cattle</subject><subject>envelope function</subject><subject>Models, Molecular</subject><subject>NEXAFS</subject><subject>Protein Conformation</subject><subject>protein structure</subject><subject>RSoXS</subject><subject>SAXS</subject><subject>Serum Albumin, Bovine - chemistry</subject><subject>small-angle scattering</subject><subject>soft X-rays</subject><subject>X-Ray Diffraction - methods</subject><issn>0969-2126</issn><issn>1878-4186</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9UcGKFDEQDaK4s6sf4EUaT166rUpPdzIIggyuCgvKtoK3kElX72ToScYkPTJ_b5pZF714yQvUq1ev6jH2AqFCwPbNroopVBxQViCqDI_YAqWQ5RJl-5gtYNWuSo68vWCXMe4AgDcAT9lFDZxDs8QF624peqddKjo_pOJHeatPRWd0ShSsuyu-Bn-0PcX5k8i6okthMmkKVPyyaVust7S3Ro9FdyBjB2tsOj1jTwY9Rnp-j1fs-_WHb-tP5c2Xj5_X729KsxQylRsBuieBKIwcgOe3xbbFFRoEkRl9Xzd13Zth2NRaCGNgs6oFAu9rbqSW9RV7d9Y9TJs99YZcCnpUh2D3OpyU11b9W3F2q-78UUnOlxLbLPDqLOBjsipm72S2xjtHJilsRM2becrr-ynB_5woJrW30dA4akd-ioojSC44CMhUPFNN8DEGGh68IKg5MbVTOTE1J6ZAqAy55-XfSzx0_IkoE96eCZRPebQUZqPkDPU2zD57b_8j_xt3rKdg</recordid><startdate>20181106</startdate><enddate>20181106</enddate><creator>Ye, Dan</creator><creator>Le, Thinh P.</creator><creator>Kuei, Brooke</creator><creator>Zhu, Chenhui</creator><creator>Zwart, Peter H.</creator><creator>Wang, Cheng</creator><creator>Gomez, Enrique D.</creator><creator>Gomez, Esther W.</creator><general>Elsevier Ltd</general><general>Elsevier</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>OTOTI</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0001-8942-4480</orcidid><orcidid>https://orcid.org/0000000189424480</orcidid></search><sort><creationdate>20181106</creationdate><title>Resonant Soft X-Ray Scattering Provides Protein Structure with Chemical Specificity</title><author>Ye, Dan ; Le, Thinh P. ; Kuei, Brooke ; Zhu, Chenhui ; Zwart, Peter H. ; Wang, Cheng ; Gomez, Enrique D. ; Gomez, Esther W.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c478t-b70ade7117c8f027c86166191c107478dd3533dcffb3a77cc0b937102d32c8a83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Animals</topic><topic>Cattle</topic><topic>envelope function</topic><topic>Models, Molecular</topic><topic>NEXAFS</topic><topic>Protein Conformation</topic><topic>protein structure</topic><topic>RSoXS</topic><topic>SAXS</topic><topic>Serum Albumin, Bovine - chemistry</topic><topic>small-angle scattering</topic><topic>soft X-rays</topic><topic>X-Ray Diffraction - methods</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ye, Dan</creatorcontrib><creatorcontrib>Le, Thinh P.</creatorcontrib><creatorcontrib>Kuei, Brooke</creatorcontrib><creatorcontrib>Zhu, Chenhui</creatorcontrib><creatorcontrib>Zwart, Peter H.</creatorcontrib><creatorcontrib>Wang, Cheng</creatorcontrib><creatorcontrib>Gomez, Enrique D.</creatorcontrib><creatorcontrib>Gomez, Esther W.</creatorcontrib><creatorcontrib>Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Structure (London)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ye, Dan</au><au>Le, Thinh P.</au><au>Kuei, Brooke</au><au>Zhu, Chenhui</au><au>Zwart, Peter H.</au><au>Wang, Cheng</au><au>Gomez, Enrique D.</au><au>Gomez, Esther W.</au><aucorp>Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Resonant Soft X-Ray Scattering Provides Protein Structure with Chemical Specificity</atitle><jtitle>Structure (London)</jtitle><addtitle>Structure</addtitle><date>2018-11-06</date><risdate>2018</risdate><volume>26</volume><issue>11</issue><spage>1513</spage><epage>1521.e3</epage><pages>1513-1521.e3</pages><issn>0969-2126</issn><eissn>1878-4186</eissn><abstract>We introduce resonant soft X-ray scattering (RSoXS) as an approach to study the structure of proteins and other biological molecules in solution. Scattering contrast calculations suggest that RSoXS has comparable or even higher sensitivity than hard X-ray scattering because of contrast generated at the absorption edges of constituent elements, such as carbon and oxygen. Here, we demonstrate that working near the carbon edge reveals the envelope function of bovine serum albumin, using scattering volumes of 10−5 μL that are multiple orders of magnitude lower than traditional scattering experiments. Furthermore, tuning the X-ray energy within the carbon absorption edge provides different signatures of the size and shape of the protein by revealing the density of different types of bonding motifs within the protein. The combination of chemical specificity, smaller sample size, and enhanced X-ray contrast will propel RSoXS as a complementary tool to existing techniques for the study of biomolecular structure.
[Display omitted]
•Soft X-ray scattering provides structural information with chemical specificity•Scattering in the soft X-ray regime enhances contrast by orders of magnitude•Reconciling scattering at various energies leads to refined structural models•Radiation damage is mitigated in the soft X-ray regime
Ye et al. demonstrate resonant soft X-ray scattering as a tool to examine the shape and size of proteins in solution. Working at X-ray absorption edges provides an opportunity to selectively highlight structure associated with specific chemistries, thereby establishing a promising technique for the study of complex biological assemblies.</abstract><cop>United States</cop><pub>Elsevier Ltd</pub><pmid>30220541</pmid><doi>10.1016/j.str.2018.07.018</doi><orcidid>https://orcid.org/0000-0001-8942-4480</orcidid><orcidid>https://orcid.org/0000000189424480</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Animals Cattle envelope function Models, Molecular NEXAFS Protein Conformation protein structure RSoXS SAXS Serum Albumin, Bovine - chemistry small-angle scattering soft X-rays X-Ray Diffraction - methods |
title | Resonant Soft X-Ray Scattering Provides Protein Structure with Chemical Specificity |
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