Structural Basis for Selective Oxidation of Phosphorylated Ethylphenols by Cytochrome P450 Monooxygenase CreJ

Selective oxidation of C-H bonds in alkylphenols holds great significance for not only structural derivatization in pharma- and biomanufacturing but also biological degradation of these toxic chemicals in environmental protection. A unique chemomimetic biocatalytic system using enzymes from a -creso...

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Veröffentlicht in:Applied and environmental microbiology 2021-05, Vol.87 (11), p.1
Hauptverfasser: Dong, Sheng, Chen, Jingfei, Zhang, Xingwang, Guo, Fei, Ma, Li, You, Cai, Wang, Xiao, Zhang, Wei, Wan, Xiaobo, Liu, Shuang-Jiang, Yao, Li-Shan, Li, Shengying, Du, Lei, Feng, Yingang
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container_title Applied and environmental microbiology
container_volume 87
creator Dong, Sheng
Chen, Jingfei
Zhang, Xingwang
Guo, Fei
Ma, Li
You, Cai
Wang, Xiao
Zhang, Wei
Wan, Xiaobo
Liu, Shuang-Jiang
Yao, Li-Shan
Li, Shengying
Du, Lei
Feng, Yingang
description Selective oxidation of C-H bonds in alkylphenols holds great significance for not only structural derivatization in pharma- and biomanufacturing but also biological degradation of these toxic chemicals in environmental protection. A unique chemomimetic biocatalytic system using enzymes from a -cresol biodegradation pathway has recently been developed. As the central biocatalyst, the cytochrome P450 monooxygenase CreJ oxidizes diverse - and -alkylphenol phosphates with perfect stereoselectivity at different efficiencies. However, the mechanism of regio- and stereoselectivity of this chemomimetic biocatalytic system remained unclear. Here, using - and -ethylphenol substrates, we elucidate the CreJ-catalyzed key steps for selective oxidations. The crystal structure of CreJ in complex with -ethylphenol phosphate was solved and compared with its complex structure with -ethylphenol phosphate isomer. The results indicate that the conformational changes of substrate-binding residues are slight, while the substrate promiscuity is achieved mainly by the available space in the catalytic cavity. Moreover, the catalytic preferences of regio- and stereoselective hydroxylation for the two ethylphenol substrates is explored by molecular dynamics simulations. The ethyl groups in the complexes display different flexibilities, and the distances of the active oxygen to H and H of methylene agree with the experimental stereoselectivity. The regioselectivity can be explained by the distances and bond dissociation energy. These results provide not only the mechanistic insights into CreJ regio- and stereoselectivity but also the structural basis for further P450 enzyme design and engineering. The key cytochrome P450 monooxygenase CreJ showed excellent regio- and stereoselectivity in the oxidation of various alkylphenol substrates. C-H bond functionalization of these toxic alkylphenols holds great significance for both biological degradation of these environmental chemicals and production of value-added structural derivatives in pharmaceutical and biochemical industries. Our results, combined with enzymatic assays, crystal structure determination of enzyme-substrate complex, and molecular dynamics simulations, provide not only significant mechanism elucidation of the regio- and stereoselective catalyzation mediated by CreJ but also the promising directions for future engineering efforts of this enzyme toward more useful products. It also has great extendable potential to couple th
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A unique chemomimetic biocatalytic system using enzymes from a -cresol biodegradation pathway has recently been developed. As the central biocatalyst, the cytochrome P450 monooxygenase CreJ oxidizes diverse - and -alkylphenol phosphates with perfect stereoselectivity at different efficiencies. However, the mechanism of regio- and stereoselectivity of this chemomimetic biocatalytic system remained unclear. Here, using - and -ethylphenol substrates, we elucidate the CreJ-catalyzed key steps for selective oxidations. The crystal structure of CreJ in complex with -ethylphenol phosphate was solved and compared with its complex structure with -ethylphenol phosphate isomer. The results indicate that the conformational changes of substrate-binding residues are slight, while the substrate promiscuity is achieved mainly by the available space in the catalytic cavity. Moreover, the catalytic preferences of regio- and stereoselective hydroxylation for the two ethylphenol substrates is explored by molecular dynamics simulations. The ethyl groups in the complexes display different flexibilities, and the distances of the active oxygen to H and H of methylene agree with the experimental stereoselectivity. The regioselectivity can be explained by the distances and bond dissociation energy. These results provide not only the mechanistic insights into CreJ regio- and stereoselectivity but also the structural basis for further P450 enzyme design and engineering. The key cytochrome P450 monooxygenase CreJ showed excellent regio- and stereoselectivity in the oxidation of various alkylphenol substrates. C-H bond functionalization of these toxic alkylphenols holds great significance for both biological degradation of these environmental chemicals and production of value-added structural derivatives in pharmaceutical and biochemical industries. 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It also has great extendable potential to couple this multifunctional P450 enzyme with other biocatalysts (e.g., hydroxyl-based glycosylase) to access more alkylphenol-derived high-value chemicals through environment-friendly biocatalysis and biotransformation.</description><identifier>ISSN: 0099-2240</identifier><identifier>EISSN: 1098-5336</identifier><identifier>DOI: 10.1128/AEM.00018-21</identifier><identifier>PMID: 33712426</identifier><language>eng</language><publisher>United States: American Society for Microbiology</publisher><subject>Alkylphenols ; Biodegradation ; Cresol ; Crystal structure ; Cytochrome ; Cytochrome P450 ; Cytochrome P450 monooxygenase ; Cytochromes P450 ; Energy of dissociation ; Environmental degradation ; Environmental protection ; Enzymology and Protein Engineering ; Free energy ; Heat of formation ; Hydroxylation ; Molecular dynamics ; Oxidation ; p-Cresol ; Pharmaceuticals ; Phosphates ; Regioselectivity ; Stereoselectivity ; Substrates</subject><ispartof>Applied and environmental microbiology, 2021-05, Vol.87 (11), p.1</ispartof><rights>Copyright © 2021 American Society for Microbiology.</rights><rights>Copyright American Society for Microbiology May 2021</rights><rights>Copyright © 2021 American Society for Microbiology. 2021 American Society for Microbiology</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a446t-34f7bd288ce0c60d10eef559cbf059b5b56c09a8f85c5eb15f0b8660ea037df63</citedby><cites>FETCH-LOGICAL-a446t-34f7bd288ce0c60d10eef559cbf059b5b56c09a8f85c5eb15f0b8660ea037df63</cites><orcidid>0000-0002-7585-310X ; 0000-0002-0879-1316</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://journals.asm.org/doi/pdf/10.1128/AEM.00018-21$$EPDF$$P50$$Gasm2$$H</linktopdf><linktohtml>$$Uhttps://journals.asm.org/doi/full/10.1128/AEM.00018-21$$EHTML$$P50$$Gasm2$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,3175,27901,27902,52726,52727,52728,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33712426$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Kelly, Robert M</contributor><creatorcontrib>Dong, Sheng</creatorcontrib><creatorcontrib>Chen, Jingfei</creatorcontrib><creatorcontrib>Zhang, Xingwang</creatorcontrib><creatorcontrib>Guo, Fei</creatorcontrib><creatorcontrib>Ma, Li</creatorcontrib><creatorcontrib>You, Cai</creatorcontrib><creatorcontrib>Wang, Xiao</creatorcontrib><creatorcontrib>Zhang, Wei</creatorcontrib><creatorcontrib>Wan, Xiaobo</creatorcontrib><creatorcontrib>Liu, Shuang-Jiang</creatorcontrib><creatorcontrib>Yao, Li-Shan</creatorcontrib><creatorcontrib>Li, Shengying</creatorcontrib><creatorcontrib>Du, Lei</creatorcontrib><creatorcontrib>Feng, Yingang</creatorcontrib><title>Structural Basis for Selective Oxidation of Phosphorylated Ethylphenols by Cytochrome P450 Monooxygenase CreJ</title><title>Applied and environmental microbiology</title><addtitle>Appl Environ Microbiol</addtitle><addtitle>Appl Environ Microbiol</addtitle><description>Selective oxidation of C-H bonds in alkylphenols holds great significance for not only structural derivatization in pharma- and biomanufacturing but also biological degradation of these toxic chemicals in environmental protection. A unique chemomimetic biocatalytic system using enzymes from a -cresol biodegradation pathway has recently been developed. As the central biocatalyst, the cytochrome P450 monooxygenase CreJ oxidizes diverse - and -alkylphenol phosphates with perfect stereoselectivity at different efficiencies. However, the mechanism of regio- and stereoselectivity of this chemomimetic biocatalytic system remained unclear. Here, using - and -ethylphenol substrates, we elucidate the CreJ-catalyzed key steps for selective oxidations. The crystal structure of CreJ in complex with -ethylphenol phosphate was solved and compared with its complex structure with -ethylphenol phosphate isomer. The results indicate that the conformational changes of substrate-binding residues are slight, while the substrate promiscuity is achieved mainly by the available space in the catalytic cavity. Moreover, the catalytic preferences of regio- and stereoselective hydroxylation for the two ethylphenol substrates is explored by molecular dynamics simulations. The ethyl groups in the complexes display different flexibilities, and the distances of the active oxygen to H and H of methylene agree with the experimental stereoselectivity. The regioselectivity can be explained by the distances and bond dissociation energy. These results provide not only the mechanistic insights into CreJ regio- and stereoselectivity but also the structural basis for further P450 enzyme design and engineering. The key cytochrome P450 monooxygenase CreJ showed excellent regio- and stereoselectivity in the oxidation of various alkylphenol substrates. C-H bond functionalization of these toxic alkylphenols holds great significance for both biological degradation of these environmental chemicals and production of value-added structural derivatives in pharmaceutical and biochemical industries. 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A unique chemomimetic biocatalytic system using enzymes from a -cresol biodegradation pathway has recently been developed. As the central biocatalyst, the cytochrome P450 monooxygenase CreJ oxidizes diverse - and -alkylphenol phosphates with perfect stereoselectivity at different efficiencies. However, the mechanism of regio- and stereoselectivity of this chemomimetic biocatalytic system remained unclear. Here, using - and -ethylphenol substrates, we elucidate the CreJ-catalyzed key steps for selective oxidations. The crystal structure of CreJ in complex with -ethylphenol phosphate was solved and compared with its complex structure with -ethylphenol phosphate isomer. The results indicate that the conformational changes of substrate-binding residues are slight, while the substrate promiscuity is achieved mainly by the available space in the catalytic cavity. Moreover, the catalytic preferences of regio- and stereoselective hydroxylation for the two ethylphenol substrates is explored by molecular dynamics simulations. The ethyl groups in the complexes display different flexibilities, and the distances of the active oxygen to H and H of methylene agree with the experimental stereoselectivity. The regioselectivity can be explained by the distances and bond dissociation energy. These results provide not only the mechanistic insights into CreJ regio- and stereoselectivity but also the structural basis for further P450 enzyme design and engineering. The key cytochrome P450 monooxygenase CreJ showed excellent regio- and stereoselectivity in the oxidation of various alkylphenol substrates. C-H bond functionalization of these toxic alkylphenols holds great significance for both biological degradation of these environmental chemicals and production of value-added structural derivatives in pharmaceutical and biochemical industries. Our results, combined with enzymatic assays, crystal structure determination of enzyme-substrate complex, and molecular dynamics simulations, provide not only significant mechanism elucidation of the regio- and stereoselective catalyzation mediated by CreJ but also the promising directions for future engineering efforts of this enzyme toward more useful products. It also has great extendable potential to couple this multifunctional P450 enzyme with other biocatalysts (e.g., hydroxyl-based glycosylase) to access more alkylphenol-derived high-value chemicals through environment-friendly biocatalysis and biotransformation.</abstract><cop>United States</cop><pub>American Society for Microbiology</pub><pmid>33712426</pmid><doi>10.1128/AEM.00018-21</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0002-7585-310X</orcidid><orcidid>https://orcid.org/0000-0002-0879-1316</orcidid><oa>free_for_read</oa></addata></record>
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source American Society for Microbiology; PubMed Central; Alma/SFX Local Collection
subjects Alkylphenols
Biodegradation
Cresol
Crystal structure
Cytochrome
Cytochrome P450
Cytochrome P450 monooxygenase
Cytochromes P450
Energy of dissociation
Environmental degradation
Environmental protection
Enzymology and Protein Engineering
Free energy
Heat of formation
Hydroxylation
Molecular dynamics
Oxidation
p-Cresol
Pharmaceuticals
Phosphates
Regioselectivity
Stereoselectivity
Substrates
title Structural Basis for Selective Oxidation of Phosphorylated Ethylphenols by Cytochrome P450 Monooxygenase CreJ
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