Increasing Inundation Frequencies Enhance the Stochastic Process and Network Complexity of the Soil Archaeal Community in Coastal Wetlands
Coastal wetlands are experiencing frequent flooding because of global climate changes, such as the rising sea level. Despite the key role of archaea in soil biogeochemical cycles, the assembly processes and co-occurrence patterns of archaeal communities in coastal wetlands in response to increasing...
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description | Coastal wetlands are experiencing frequent flooding because of global climate changes, such as the rising sea level. Despite the key role of archaea in soil biogeochemical cycles, the assembly processes and co-occurrence patterns of archaeal communities in coastal wetlands in response to increasing inundation frequencies remain elusive. In this study, we established an
mesocosm with an inundation frequency gradient to investigate the response of soil archaeal community toward increasing inundation frequencies in monocultures of
and a mangrove species,
Both neutral community model and null model analyses suggested that stochastic processes are dominant in governing the archaeal community assembly and that the stochastic processes are enhanced with increasing inundation frequencies. Increasing inundation frequencies significantly increased the community niche width. Moreover, archaeal community in
soil displayed lower niche overlap and higher stochasticity than in
soil. Co-occurrence network analysis revealed that the network complexity increases with increase in the inundation frequencies. Soil water content is the most decisive factor influencing the archaeal communities. Overall, we found that increasing inundation frequencies enhance the stochastic processes and network complexity of the soil archaeal community in coastal wetlands. This study could enhance our understanding on the response of soil archaeal communities in coastal wetlands toward global change.
Coastal wetlands, subjected to regular disturbances by periodic tides, are highly productive and important in the regulation of climate change. However, the assembly mechanisms and co-occurrence patterns of soil archaeal communities in coastal areas remain poorly known, especially for their responses to increasing inundation frequencies. In this study, we aimed at unraveling these uncertainties by studying typical estuarine ecosystems in southern China. We show that increasing inundation frequencies enhance the stochastic processes and network complexity of the soil archaeal community. This study offers a new path for an improved understanding of archaeal community assembly and species coexistence in coastal environments, with a special focus on the role of inundation frequency. |
doi_str_mv | 10.1128/AEM.02560-20 |
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mesocosm with an inundation frequency gradient to investigate the response of soil archaeal community toward increasing inundation frequencies in monocultures of
and a mangrove species,
Both neutral community model and null model analyses suggested that stochastic processes are dominant in governing the archaeal community assembly and that the stochastic processes are enhanced with increasing inundation frequencies. Increasing inundation frequencies significantly increased the community niche width. Moreover, archaeal community in
soil displayed lower niche overlap and higher stochasticity than in
soil. Co-occurrence network analysis revealed that the network complexity increases with increase in the inundation frequencies. Soil water content is the most decisive factor influencing the archaeal communities. Overall, we found that increasing inundation frequencies enhance the stochastic processes and network complexity of the soil archaeal community in coastal wetlands. This study could enhance our understanding on the response of soil archaeal communities in coastal wetlands toward global change.
Coastal wetlands, subjected to regular disturbances by periodic tides, are highly productive and important in the regulation of climate change. However, the assembly mechanisms and co-occurrence patterns of soil archaeal communities in coastal areas remain poorly known, especially for their responses to increasing inundation frequencies. In this study, we aimed at unraveling these uncertainties by studying typical estuarine ecosystems in southern China. We show that increasing inundation frequencies enhance the stochastic processes and network complexity of the soil archaeal community. This study offers a new path for an improved understanding of archaeal community assembly and species coexistence in coastal environments, with a special focus on the role of inundation frequency.</description><identifier>ISSN: 0099-2240</identifier><identifier>EISSN: 1098-5336</identifier><identifier>DOI: 10.1128/AEM.02560-20</identifier><identifier>PMID: 33741614</identifier><language>eng</language><publisher>United States: American Society for Microbiology</publisher><subject>Aquatic plants ; Archaea ; Archaea - physiology ; Assembly ; Biogeochemical cycles ; China ; Climate change ; Complexity ; Flood frequency ; Flooding ; Floods ; Microbial Ecology ; Microbiota ; Moisture content ; Monoculture ; Network analysis ; Niche overlap ; Niches ; Poaceae - physiology ; Rhizophoraceae - physiology ; Sea Level Rise ; Soil analysis ; Soil investigations ; Soil Microbiology ; Soil water ; Spartina alterniflora ; Stochastic models ; Stochastic Processes ; Stochasticity ; Water content ; Wetlands</subject><ispartof>Applied and environmental microbiology, 2021-05, Vol.87 (11), p.1</ispartof><rights>Copyright © 2021 American Society for Microbiology.</rights><rights>Copyright American Society for Microbiology May 2021</rights><rights>Copyright © 2021 American Society for Microbiology. 2021 American Society for Microbiology</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a376t-6d386a4925038c50133073976f7d3eeafc834998d62cd609ecd6b63baca4509c3</citedby><cites>FETCH-LOGICAL-a376t-6d386a4925038c50133073976f7d3eeafc834998d62cd609ecd6b63baca4509c3</cites><orcidid>0000-0001-9004-8750</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://journals.asm.org/doi/pdf/10.1128/AEM.02560-20$$EPDF$$P50$$Gasm2$$H</linktopdf><linktohtml>$$Uhttps://journals.asm.org/doi/full/10.1128/AEM.02560-20$$EHTML$$P50$$Gasm2$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,3175,27901,27902,52726,52727,52728,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33741614$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Atomi, Haruyuki</contributor><creatorcontrib>Gao, Gui-Feng</creatorcontrib><creatorcontrib>Peng, Dan</creatorcontrib><creatorcontrib>Wu, Di</creatorcontrib><creatorcontrib>Zhang, Yihui</creatorcontrib><creatorcontrib>Chu, Haiyan</creatorcontrib><title>Increasing Inundation Frequencies Enhance the Stochastic Process and Network Complexity of the Soil Archaeal Community in Coastal Wetlands</title><title>Applied and environmental microbiology</title><addtitle>Appl Environ Microbiol</addtitle><addtitle>Appl Environ Microbiol</addtitle><description>Coastal wetlands are experiencing frequent flooding because of global climate changes, such as the rising sea level. Despite the key role of archaea in soil biogeochemical cycles, the assembly processes and co-occurrence patterns of archaeal communities in coastal wetlands in response to increasing inundation frequencies remain elusive. In this study, we established an
mesocosm with an inundation frequency gradient to investigate the response of soil archaeal community toward increasing inundation frequencies in monocultures of
and a mangrove species,
Both neutral community model and null model analyses suggested that stochastic processes are dominant in governing the archaeal community assembly and that the stochastic processes are enhanced with increasing inundation frequencies. Increasing inundation frequencies significantly increased the community niche width. Moreover, archaeal community in
soil displayed lower niche overlap and higher stochasticity than in
soil. Co-occurrence network analysis revealed that the network complexity increases with increase in the inundation frequencies. Soil water content is the most decisive factor influencing the archaeal communities. Overall, we found that increasing inundation frequencies enhance the stochastic processes and network complexity of the soil archaeal community in coastal wetlands. This study could enhance our understanding on the response of soil archaeal communities in coastal wetlands toward global change.
Coastal wetlands, subjected to regular disturbances by periodic tides, are highly productive and important in the regulation of climate change. However, the assembly mechanisms and co-occurrence patterns of soil archaeal communities in coastal areas remain poorly known, especially for their responses to increasing inundation frequencies. In this study, we aimed at unraveling these uncertainties by studying typical estuarine ecosystems in southern China. We show that increasing inundation frequencies enhance the stochastic processes and network complexity of the soil archaeal community. This study offers a new path for an improved understanding of archaeal community assembly and species coexistence in coastal environments, with a special focus on the role of inundation frequency.</description><subject>Aquatic plants</subject><subject>Archaea</subject><subject>Archaea - physiology</subject><subject>Assembly</subject><subject>Biogeochemical cycles</subject><subject>China</subject><subject>Climate change</subject><subject>Complexity</subject><subject>Flood frequency</subject><subject>Flooding</subject><subject>Floods</subject><subject>Microbial Ecology</subject><subject>Microbiota</subject><subject>Moisture content</subject><subject>Monoculture</subject><subject>Network analysis</subject><subject>Niche overlap</subject><subject>Niches</subject><subject>Poaceae - physiology</subject><subject>Rhizophoraceae - physiology</subject><subject>Sea Level Rise</subject><subject>Soil analysis</subject><subject>Soil investigations</subject><subject>Soil Microbiology</subject><subject>Soil water</subject><subject>Spartina alterniflora</subject><subject>Stochastic models</subject><subject>Stochastic Processes</subject><subject>Stochasticity</subject><subject>Water content</subject><subject>Wetlands</subject><issn>0099-2240</issn><issn>1098-5336</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kV9vFCEUxYnR2G3rm8-GxCcTp15ghoEXk81mazepf5JqfCQsw3SpM7AFRtuv4Kcu69aqD75A4Jz7uxcOQs8JnBBCxZv58v0J0IZDReERmhGQomoY44_RDEDKitIaDtBhSlcAUAMXT9EBY21NOKln6OfKm2h1cv4Sr_zkO51d8Pg02uvJeuNswku_0d5YnDcWX-RgNjplZ_CnGIxNCWvf4Q82_wjxG16EcTvYG5dvcej3BcENeB5LkdXDTh8nv5OdL4cCKpdfbR4KJB2jJ70ekn12vx-hL6fLz4uz6vzju9Vifl5p1vJc8Y4JrmtJG2DCNEAYg5bJlvdtx6zVvRGsllJ0nJqOg7RlXXO21kbXDUjDjtDbPXc7rUfbGetz1IPaRjfqeKuCdupfxbuNugzflaAgCGsL4OU9IIbySymrqzBFX2ZWtKnLdFTUrLhe710mhpSi7R86EFC75FRJTv1KTlEo9ld7u04j_QP8j_fF3y94AP-Old0Bt3ii2g</recordid><startdate>20210511</startdate><enddate>20210511</enddate><creator>Gao, Gui-Feng</creator><creator>Peng, Dan</creator><creator>Wu, Di</creator><creator>Zhang, Yihui</creator><creator>Chu, Haiyan</creator><general>American Society for Microbiology</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7SN</scope><scope>7SS</scope><scope>7ST</scope><scope>7T7</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>SOI</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0001-9004-8750</orcidid></search><sort><creationdate>20210511</creationdate><title>Increasing Inundation Frequencies Enhance the Stochastic Process and Network Complexity of the Soil Archaeal Community in Coastal Wetlands</title><author>Gao, Gui-Feng ; Peng, Dan ; Wu, Di ; Zhang, Yihui ; Chu, Haiyan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a376t-6d386a4925038c50133073976f7d3eeafc834998d62cd609ecd6b63baca4509c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Aquatic plants</topic><topic>Archaea</topic><topic>Archaea - physiology</topic><topic>Assembly</topic><topic>Biogeochemical cycles</topic><topic>China</topic><topic>Climate change</topic><topic>Complexity</topic><topic>Flood frequency</topic><topic>Flooding</topic><topic>Floods</topic><topic>Microbial Ecology</topic><topic>Microbiota</topic><topic>Moisture content</topic><topic>Monoculture</topic><topic>Network analysis</topic><topic>Niche overlap</topic><topic>Niches</topic><topic>Poaceae - physiology</topic><topic>Rhizophoraceae - physiology</topic><topic>Sea Level Rise</topic><topic>Soil analysis</topic><topic>Soil investigations</topic><topic>Soil Microbiology</topic><topic>Soil water</topic><topic>Spartina alterniflora</topic><topic>Stochastic models</topic><topic>Stochastic Processes</topic><topic>Stochasticity</topic><topic>Water content</topic><topic>Wetlands</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gao, Gui-Feng</creatorcontrib><creatorcontrib>Peng, Dan</creatorcontrib><creatorcontrib>Wu, Di</creatorcontrib><creatorcontrib>Zhang, Yihui</creatorcontrib><creatorcontrib>Chu, Haiyan</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Environment Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Environment Abstracts</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Applied and environmental microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gao, Gui-Feng</au><au>Peng, Dan</au><au>Wu, Di</au><au>Zhang, Yihui</au><au>Chu, Haiyan</au><au>Atomi, Haruyuki</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Increasing Inundation Frequencies Enhance the Stochastic Process and Network Complexity of the Soil Archaeal Community in Coastal Wetlands</atitle><jtitle>Applied and environmental microbiology</jtitle><stitle>Appl Environ Microbiol</stitle><addtitle>Appl Environ Microbiol</addtitle><date>2021-05-11</date><risdate>2021</risdate><volume>87</volume><issue>11</issue><spage>1</spage><pages>1-</pages><issn>0099-2240</issn><eissn>1098-5336</eissn><abstract>Coastal wetlands are experiencing frequent flooding because of global climate changes, such as the rising sea level. Despite the key role of archaea in soil biogeochemical cycles, the assembly processes and co-occurrence patterns of archaeal communities in coastal wetlands in response to increasing inundation frequencies remain elusive. In this study, we established an
mesocosm with an inundation frequency gradient to investigate the response of soil archaeal community toward increasing inundation frequencies in monocultures of
and a mangrove species,
Both neutral community model and null model analyses suggested that stochastic processes are dominant in governing the archaeal community assembly and that the stochastic processes are enhanced with increasing inundation frequencies. Increasing inundation frequencies significantly increased the community niche width. Moreover, archaeal community in
soil displayed lower niche overlap and higher stochasticity than in
soil. Co-occurrence network analysis revealed that the network complexity increases with increase in the inundation frequencies. Soil water content is the most decisive factor influencing the archaeal communities. Overall, we found that increasing inundation frequencies enhance the stochastic processes and network complexity of the soil archaeal community in coastal wetlands. This study could enhance our understanding on the response of soil archaeal communities in coastal wetlands toward global change.
Coastal wetlands, subjected to regular disturbances by periodic tides, are highly productive and important in the regulation of climate change. However, the assembly mechanisms and co-occurrence patterns of soil archaeal communities in coastal areas remain poorly known, especially for their responses to increasing inundation frequencies. In this study, we aimed at unraveling these uncertainties by studying typical estuarine ecosystems in southern China. We show that increasing inundation frequencies enhance the stochastic processes and network complexity of the soil archaeal community. This study offers a new path for an improved understanding of archaeal community assembly and species coexistence in coastal environments, with a special focus on the role of inundation frequency.</abstract><cop>United States</cop><pub>American Society for Microbiology</pub><pmid>33741614</pmid><doi>10.1128/AEM.02560-20</doi><tpages>14</tpages><orcidid>https://orcid.org/0000-0001-9004-8750</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Aquatic plants Archaea Archaea - physiology Assembly Biogeochemical cycles China Climate change Complexity Flood frequency Flooding Floods Microbial Ecology Microbiota Moisture content Monoculture Network analysis Niche overlap Niches Poaceae - physiology Rhizophoraceae - physiology Sea Level Rise Soil analysis Soil investigations Soil Microbiology Soil water Spartina alterniflora Stochastic models Stochastic Processes Stochasticity Water content Wetlands |
title | Increasing Inundation Frequencies Enhance the Stochastic Process and Network Complexity of the Soil Archaeal Community in Coastal Wetlands |
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