Automatic pulmonary vessel segmentation on noncontrast chest CT: deep learning algorithm developed using spatiotemporally matched virtual noncontrast images and low-keV contrast-enhanced vessel maps
Objectives To develop a deep learning–based pulmonary vessel segmentation algorithm (DLVS) from noncontrast chest CT and to investigate its clinical implications in assessing vascular remodeling of chronic obstructive lung disease (COPD) patients. Methods For development, 104 pulmonary CT angiograph...
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Veröffentlicht in: | European radiology 2021-12, Vol.31 (12), p.9012-9021 |
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creator | Nam, Ju Gang Witanto, Joseph Nathanael Park, Sang Joon Yoo, Seung Jin Goo, Jin Mo Yoon, Soon Ho |
description | Objectives
To develop a deep learning–based pulmonary vessel segmentation algorithm (DLVS) from noncontrast chest CT and to investigate its clinical implications in assessing vascular remodeling of chronic obstructive lung disease (COPD) patients.
Methods
For development, 104 pulmonary CT angiography scans (49,054 slices) using a dual-source CT were collected, and spatiotemporally matched virtual noncontrast and 50-keV images were generated. Vessel maps were extracted from the 50-keV images. The 3-dimensional U-Net-based DLVS was trained to segment pulmonary vessels (with a vessel map as the output) from virtual noncontrast images (as the input). For external validation, vendor-independent noncontrast CT images (
n
= 14) and the VESSEL 12 challenge open dataset (
n
= 3) were used. For each case, 200 points were selected including 20 intra-lesional points, and the probability value for each point was extracted. For clinical validation, we included 281 COPD patients with low-dose noncontrast CTs. The DLVS-calculated volume of vessels with a cross-sectional area < 5 mm
2
(PVV5) and the PVV5 divided by total vessel volume (%PVV5) were measured.
Results
DLVS correctly segmented 99.1% of the intravascular points (1,387/1,400) and 93.1% of the extravascular points (1,309/1,400). The areas-under-the receiver-operating characteristic curve (AUROCs) were 0.977 and 0.969 for the two external validation datasets. For the COPD patients, both PPV5 and %PPV5 successfully differentiated severe patients whose FEV1 < 50 (AUROCs; 0.715 and 0.804) and were significantly correlated with the emphysema index (
P
s < .05).
Conclusions
DLVS successfully segmented pulmonary vessels on noncontrast chest CT by utilizing spatiotemporally matched 50-keV images from a dual-source CT scanner and showed promising clinical applicability in COPD.
Key Points
• We developed a deep learning pulmonary vessel segmentation algorithm using virtual noncontrast images and 50-keV enhanced images produced by a dual-source CT scanner.
• Our algorithm successfully segmented vessels on diseased lungs.
• Our algorithm showed promising results in assessing the loss of small vessel density in COPD patients. |
doi_str_mv | 10.1007/s00330-021-08036-z |
format | Article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_8131193</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2528906982</sourcerecordid><originalsourceid>FETCH-LOGICAL-c540t-e0bbd6546d3bb9b4ee1066204528ab189b0766a4fb40fca8c78289835f41c7a73</originalsourceid><addsrcrecordid>eNp9Uk1v1DAUjBCILoU_wAFZ4sIl8Bx7E5sDUrXiS6rEpXC1HOclm-LYwU622v5AfhcOaQvlgGTZlmfevHnWZNlzCq8pQPUmAjAGORQ0BwGszK8fZBvKWZFTEPxhtgHJRF5JyU-yJzFeAoCkvHqcnTCerpzSTfbzbJ78oKfekHG2g3c6HMkBY0RLInYDuimB3pG0nHfGuynoOBGzx7TvLt6SBnEkFnVwveuItp0P_bQf0vsBrR-xIXNckDguQhMOow_a2iNJXZNKQw59mGZt78n3g-4wEu0aYv1V_h2_kVssR7fXziyFq81Bj_Fp9qjVNuKzm_M0-_rh_cXuU37-5ePn3dl5brYcUinUdVNuedmwupY1R6RQlgXwbSF0TYWsoSpLzduaQ2u0MJUohBRs23JqKl2x0-zdqjvO9YCNwcWTVWNIhsNRed2r-4jr96rzByUoo1SyJPDqRiD4H3P6QzX00aC12qGfoyqSEwmlFEWivvyHeunn4NJ4iSVLQWlVLYLFyjLBxxiwvTNDQS0xUWtMVIqJ-h0TdZ2KXvw9xl3JbS4Sga2EmCDXYfjT-z-yvwDZo9A3</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2596811773</pqid></control><display><type>article</type><title>Automatic pulmonary vessel segmentation on noncontrast chest CT: deep learning algorithm developed using spatiotemporally matched virtual noncontrast images and low-keV contrast-enhanced vessel maps</title><source>MEDLINE</source><source>Springer Nature - Complete Springer Journals</source><creator>Nam, Ju Gang ; Witanto, Joseph Nathanael ; Park, Sang Joon ; Yoo, Seung Jin ; Goo, Jin Mo ; Yoon, Soon Ho</creator><creatorcontrib>Nam, Ju Gang ; Witanto, Joseph Nathanael ; Park, Sang Joon ; Yoo, Seung Jin ; Goo, Jin Mo ; Yoon, Soon Ho</creatorcontrib><description>Objectives
To develop a deep learning–based pulmonary vessel segmentation algorithm (DLVS) from noncontrast chest CT and to investigate its clinical implications in assessing vascular remodeling of chronic obstructive lung disease (COPD) patients.
Methods
For development, 104 pulmonary CT angiography scans (49,054 slices) using a dual-source CT were collected, and spatiotemporally matched virtual noncontrast and 50-keV images were generated. Vessel maps were extracted from the 50-keV images. The 3-dimensional U-Net-based DLVS was trained to segment pulmonary vessels (with a vessel map as the output) from virtual noncontrast images (as the input). For external validation, vendor-independent noncontrast CT images (
n
= 14) and the VESSEL 12 challenge open dataset (
n
= 3) were used. For each case, 200 points were selected including 20 intra-lesional points, and the probability value for each point was extracted. For clinical validation, we included 281 COPD patients with low-dose noncontrast CTs. The DLVS-calculated volume of vessels with a cross-sectional area < 5 mm
2
(PVV5) and the PVV5 divided by total vessel volume (%PVV5) were measured.
Results
DLVS correctly segmented 99.1% of the intravascular points (1,387/1,400) and 93.1% of the extravascular points (1,309/1,400). The areas-under-the receiver-operating characteristic curve (AUROCs) were 0.977 and 0.969 for the two external validation datasets. For the COPD patients, both PPV5 and %PPV5 successfully differentiated severe patients whose FEV1 < 50 (AUROCs; 0.715 and 0.804) and were significantly correlated with the emphysema index (
P
s < .05).
Conclusions
DLVS successfully segmented pulmonary vessels on noncontrast chest CT by utilizing spatiotemporally matched 50-keV images from a dual-source CT scanner and showed promising clinical applicability in COPD.
Key Points
• We developed a deep learning pulmonary vessel segmentation algorithm using virtual noncontrast images and 50-keV enhanced images produced by a dual-source CT scanner.
• Our algorithm successfully segmented vessels on diseased lungs.
• Our algorithm showed promising results in assessing the loss of small vessel density in COPD patients.</description><identifier>ISSN: 0938-7994</identifier><identifier>ISSN: 1432-1084</identifier><identifier>EISSN: 1432-1084</identifier><identifier>DOI: 10.1007/s00330-021-08036-z</identifier><identifier>PMID: 34009411</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Algorithms ; Angiography ; Chest ; Chronic obstructive pulmonary disease ; Computed tomography ; Computed Tomography Angiography ; Datasets ; Deep Learning ; Diagnostic Radiology ; Emphysema ; Humans ; Image contrast ; Image enhancement ; Image processing ; Image segmentation ; Imaging ; Internal Medicine ; Interventional Radiology ; Lung diseases ; Machine learning ; Medical imaging ; Medicine ; Medicine & Public Health ; Neuroradiology ; Obstructive lung disease ; Patients ; Radiology ; Scanners ; Thorax ; Tomography, X-Ray Computed ; Ultrasound</subject><ispartof>European radiology, 2021-12, Vol.31 (12), p.9012-9021</ispartof><rights>European Society of Radiology 2021</rights><rights>2021. European Society of Radiology.</rights><rights>European Society of Radiology 2021.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c540t-e0bbd6546d3bb9b4ee1066204528ab189b0766a4fb40fca8c78289835f41c7a73</citedby><cites>FETCH-LOGICAL-c540t-e0bbd6546d3bb9b4ee1066204528ab189b0766a4fb40fca8c78289835f41c7a73</cites><orcidid>0000-0002-3700-0165</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00330-021-08036-z$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00330-021-08036-z$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>230,314,776,780,881,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34009411$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nam, Ju Gang</creatorcontrib><creatorcontrib>Witanto, Joseph Nathanael</creatorcontrib><creatorcontrib>Park, Sang Joon</creatorcontrib><creatorcontrib>Yoo, Seung Jin</creatorcontrib><creatorcontrib>Goo, Jin Mo</creatorcontrib><creatorcontrib>Yoon, Soon Ho</creatorcontrib><title>Automatic pulmonary vessel segmentation on noncontrast chest CT: deep learning algorithm developed using spatiotemporally matched virtual noncontrast images and low-keV contrast-enhanced vessel maps</title><title>European radiology</title><addtitle>Eur Radiol</addtitle><addtitle>Eur Radiol</addtitle><description>Objectives
To develop a deep learning–based pulmonary vessel segmentation algorithm (DLVS) from noncontrast chest CT and to investigate its clinical implications in assessing vascular remodeling of chronic obstructive lung disease (COPD) patients.
Methods
For development, 104 pulmonary CT angiography scans (49,054 slices) using a dual-source CT were collected, and spatiotemporally matched virtual noncontrast and 50-keV images were generated. Vessel maps were extracted from the 50-keV images. The 3-dimensional U-Net-based DLVS was trained to segment pulmonary vessels (with a vessel map as the output) from virtual noncontrast images (as the input). For external validation, vendor-independent noncontrast CT images (
n
= 14) and the VESSEL 12 challenge open dataset (
n
= 3) were used. For each case, 200 points were selected including 20 intra-lesional points, and the probability value for each point was extracted. For clinical validation, we included 281 COPD patients with low-dose noncontrast CTs. The DLVS-calculated volume of vessels with a cross-sectional area < 5 mm
2
(PVV5) and the PVV5 divided by total vessel volume (%PVV5) were measured.
Results
DLVS correctly segmented 99.1% of the intravascular points (1,387/1,400) and 93.1% of the extravascular points (1,309/1,400). The areas-under-the receiver-operating characteristic curve (AUROCs) were 0.977 and 0.969 for the two external validation datasets. For the COPD patients, both PPV5 and %PPV5 successfully differentiated severe patients whose FEV1 < 50 (AUROCs; 0.715 and 0.804) and were significantly correlated with the emphysema index (
P
s < .05).
Conclusions
DLVS successfully segmented pulmonary vessels on noncontrast chest CT by utilizing spatiotemporally matched 50-keV images from a dual-source CT scanner and showed promising clinical applicability in COPD.
Key Points
• We developed a deep learning pulmonary vessel segmentation algorithm using virtual noncontrast images and 50-keV enhanced images produced by a dual-source CT scanner.
• Our algorithm successfully segmented vessels on diseased lungs.
• Our algorithm showed promising results in assessing the loss of small vessel density in COPD patients.</description><subject>Algorithms</subject><subject>Angiography</subject><subject>Chest</subject><subject>Chronic obstructive pulmonary disease</subject><subject>Computed tomography</subject><subject>Computed Tomography Angiography</subject><subject>Datasets</subject><subject>Deep Learning</subject><subject>Diagnostic Radiology</subject><subject>Emphysema</subject><subject>Humans</subject><subject>Image contrast</subject><subject>Image enhancement</subject><subject>Image processing</subject><subject>Image segmentation</subject><subject>Imaging</subject><subject>Internal Medicine</subject><subject>Interventional Radiology</subject><subject>Lung diseases</subject><subject>Machine learning</subject><subject>Medical imaging</subject><subject>Medicine</subject><subject>Medicine & Public Health</subject><subject>Neuroradiology</subject><subject>Obstructive lung disease</subject><subject>Patients</subject><subject>Radiology</subject><subject>Scanners</subject><subject>Thorax</subject><subject>Tomography, X-Ray Computed</subject><subject>Ultrasound</subject><issn>0938-7994</issn><issn>1432-1084</issn><issn>1432-1084</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNp9Uk1v1DAUjBCILoU_wAFZ4sIl8Bx7E5sDUrXiS6rEpXC1HOclm-LYwU622v5AfhcOaQvlgGTZlmfevHnWZNlzCq8pQPUmAjAGORQ0BwGszK8fZBvKWZFTEPxhtgHJRF5JyU-yJzFeAoCkvHqcnTCerpzSTfbzbJ78oKfekHG2g3c6HMkBY0RLInYDuimB3pG0nHfGuynoOBGzx7TvLt6SBnEkFnVwveuItp0P_bQf0vsBrR-xIXNckDguQhMOow_a2iNJXZNKQw59mGZt78n3g-4wEu0aYv1V_h2_kVssR7fXziyFq81Bj_Fp9qjVNuKzm_M0-_rh_cXuU37-5ePn3dl5brYcUinUdVNuedmwupY1R6RQlgXwbSF0TYWsoSpLzduaQ2u0MJUohBRs23JqKl2x0-zdqjvO9YCNwcWTVWNIhsNRed2r-4jr96rzByUoo1SyJPDqRiD4H3P6QzX00aC12qGfoyqSEwmlFEWivvyHeunn4NJ4iSVLQWlVLYLFyjLBxxiwvTNDQS0xUWtMVIqJ-h0TdZ2KXvw9xl3JbS4Sga2EmCDXYfjT-z-yvwDZo9A3</recordid><startdate>20211201</startdate><enddate>20211201</enddate><creator>Nam, Ju Gang</creator><creator>Witanto, Joseph Nathanael</creator><creator>Park, Sang Joon</creator><creator>Yoo, Seung Jin</creator><creator>Goo, Jin Mo</creator><creator>Yoon, Soon Ho</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QO</scope><scope>7RV</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ARAPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>KB0</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>NAPCQ</scope><scope>P5Z</scope><scope>P62</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-3700-0165</orcidid></search><sort><creationdate>20211201</creationdate><title>Automatic pulmonary vessel segmentation on noncontrast chest CT: deep learning algorithm developed using spatiotemporally matched virtual noncontrast images and low-keV contrast-enhanced vessel maps</title><author>Nam, Ju Gang ; Witanto, Joseph Nathanael ; Park, Sang Joon ; Yoo, Seung Jin ; Goo, Jin Mo ; Yoon, Soon Ho</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c540t-e0bbd6546d3bb9b4ee1066204528ab189b0766a4fb40fca8c78289835f41c7a73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Algorithms</topic><topic>Angiography</topic><topic>Chest</topic><topic>Chronic obstructive pulmonary disease</topic><topic>Computed tomography</topic><topic>Computed Tomography Angiography</topic><topic>Datasets</topic><topic>Deep Learning</topic><topic>Diagnostic Radiology</topic><topic>Emphysema</topic><topic>Humans</topic><topic>Image contrast</topic><topic>Image enhancement</topic><topic>Image processing</topic><topic>Image segmentation</topic><topic>Imaging</topic><topic>Internal Medicine</topic><topic>Interventional Radiology</topic><topic>Lung diseases</topic><topic>Machine learning</topic><topic>Medical imaging</topic><topic>Medicine</topic><topic>Medicine & Public Health</topic><topic>Neuroradiology</topic><topic>Obstructive lung disease</topic><topic>Patients</topic><topic>Radiology</topic><topic>Scanners</topic><topic>Thorax</topic><topic>Tomography, X-Ray Computed</topic><topic>Ultrasound</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Nam, Ju Gang</creatorcontrib><creatorcontrib>Witanto, Joseph Nathanael</creatorcontrib><creatorcontrib>Park, Sang Joon</creatorcontrib><creatorcontrib>Yoo, Seung Jin</creatorcontrib><creatorcontrib>Goo, Jin Mo</creatorcontrib><creatorcontrib>Yoon, Soon Ho</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE 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& Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Nursing & Allied Health Premium</collection><collection>Advanced Technologies & Aerospace Database</collection><collection>ProQuest Advanced Technologies & Aerospace Collection</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>European radiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Nam, Ju Gang</au><au>Witanto, Joseph Nathanael</au><au>Park, Sang Joon</au><au>Yoo, Seung Jin</au><au>Goo, Jin Mo</au><au>Yoon, Soon Ho</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Automatic pulmonary vessel segmentation on noncontrast chest CT: deep learning algorithm developed using spatiotemporally matched virtual noncontrast images and low-keV contrast-enhanced vessel maps</atitle><jtitle>European radiology</jtitle><stitle>Eur Radiol</stitle><addtitle>Eur Radiol</addtitle><date>2021-12-01</date><risdate>2021</risdate><volume>31</volume><issue>12</issue><spage>9012</spage><epage>9021</epage><pages>9012-9021</pages><issn>0938-7994</issn><issn>1432-1084</issn><eissn>1432-1084</eissn><abstract>Objectives
To develop a deep learning–based pulmonary vessel segmentation algorithm (DLVS) from noncontrast chest CT and to investigate its clinical implications in assessing vascular remodeling of chronic obstructive lung disease (COPD) patients.
Methods
For development, 104 pulmonary CT angiography scans (49,054 slices) using a dual-source CT were collected, and spatiotemporally matched virtual noncontrast and 50-keV images were generated. Vessel maps were extracted from the 50-keV images. The 3-dimensional U-Net-based DLVS was trained to segment pulmonary vessels (with a vessel map as the output) from virtual noncontrast images (as the input). For external validation, vendor-independent noncontrast CT images (
n
= 14) and the VESSEL 12 challenge open dataset (
n
= 3) were used. For each case, 200 points were selected including 20 intra-lesional points, and the probability value for each point was extracted. For clinical validation, we included 281 COPD patients with low-dose noncontrast CTs. The DLVS-calculated volume of vessels with a cross-sectional area < 5 mm
2
(PVV5) and the PVV5 divided by total vessel volume (%PVV5) were measured.
Results
DLVS correctly segmented 99.1% of the intravascular points (1,387/1,400) and 93.1% of the extravascular points (1,309/1,400). The areas-under-the receiver-operating characteristic curve (AUROCs) were 0.977 and 0.969 for the two external validation datasets. For the COPD patients, both PPV5 and %PPV5 successfully differentiated severe patients whose FEV1 < 50 (AUROCs; 0.715 and 0.804) and were significantly correlated with the emphysema index (
P
s < .05).
Conclusions
DLVS successfully segmented pulmonary vessels on noncontrast chest CT by utilizing spatiotemporally matched 50-keV images from a dual-source CT scanner and showed promising clinical applicability in COPD.
Key Points
• We developed a deep learning pulmonary vessel segmentation algorithm using virtual noncontrast images and 50-keV enhanced images produced by a dual-source CT scanner.
• Our algorithm successfully segmented vessels on diseased lungs.
• Our algorithm showed promising results in assessing the loss of small vessel density in COPD patients.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>34009411</pmid><doi>10.1007/s00330-021-08036-z</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0002-3700-0165</orcidid><oa>free_for_read</oa></addata></record> |
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source | MEDLINE; Springer Nature - Complete Springer Journals |
subjects | Algorithms Angiography Chest Chronic obstructive pulmonary disease Computed tomography Computed Tomography Angiography Datasets Deep Learning Diagnostic Radiology Emphysema Humans Image contrast Image enhancement Image processing Image segmentation Imaging Internal Medicine Interventional Radiology Lung diseases Machine learning Medical imaging Medicine Medicine & Public Health Neuroradiology Obstructive lung disease Patients Radiology Scanners Thorax Tomography, X-Ray Computed Ultrasound |
title | Automatic pulmonary vessel segmentation on noncontrast chest CT: deep learning algorithm developed using spatiotemporally matched virtual noncontrast images and low-keV contrast-enhanced vessel maps |
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