A loss‐of‐function of the dirigent gene TaDIR‐B1 improves resistance to Fusarium crown rot in wheat
The TaDIR gene was identified by GWAS and QTL mapping of Fusarium crown rot (FCR) resistance and was functionally verified by VIGS and analysis of tetraploid and hexaploid wheat mutants. (a): Classification of FCR disease index in the surveyed cultivars. (b) Number of accessions with different FCR D...
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| Veröffentlicht in: | Plant biotechnology journal 2021-05, Vol.19 (5), p.866-868 |
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| creator | Yang, Xia Zhong, Shaobin Zhang, Qijun Ren, Yan Sun, Congwei Chen, Feng |
| description | The TaDIR gene was identified by GWAS and QTL mapping of Fusarium crown rot (FCR) resistance and was functionally verified by VIGS and analysis of tetraploid and hexaploid wheat mutants. (a): Classification of FCR disease index in the surveyed cultivars. (b) Number of accessions with different FCR DI in the association panel. (c) Manhattan and Q‐Q plots for FCR DI in different environments. (d) Distribution of significant SNPs revealed by GWAS on various chromosomes. (e) Haplotype analysis of significant SNPs on 4B identified at multiple environments. (f–g) Comparison of FCR DI of wheat accessions with different alleles in the block on 4B. (h) QTL mapping for FCR DI in the Bainong64/Jingshuang16 (BJ) population. (i) The schematic range of 6 candidate genes including TaDIR identified by haplotype analysis and QTL mapping. (j) Full alignment of amino acid of TaDIR‐B1 alleles between low DI and high DI accessions. (k) Development of the dCAPS marker to distinguish TaDIR‐B1 alleles. Furthermore, TaDIR‐B1 gene was silenced in the FCR‐susceptible cultivar Pingyuan 50 using virus‐induced gene silencing (VIGS) by barley stripe mosaic virus (BSMV). qRT‐PCR analysis showed significant down‐regulation of TaDIR‐B1 in VIGS‐silenced plants (Figure 1l‐2). Compared to the WT and BSMV0 plants, the lignin content in the BSMVTaDIR‐B1 plants was remarkedly increased, and the activities of superoxide dismutase (SOD), catalase (CAT) and peroxidase (POD) were also dramatically increased, but the malondialdehyde (MDA) content was significantly decreased in BSMVTaDIR‐B1 plants (Figure 1l‐4). Physiological analysis showed that lignin accumulation was dramatically increased in silenced‐TaDIR‐B1 plants. [...]improvement of FCR resistance caused by loss of function of the TaDIR‐B1 gene may be attributed to accumulation of lignin in wheat plants. |
| doi_str_mv | 10.1111/pbi.13554 |
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(a): Classification of FCR disease index in the surveyed cultivars. (b) Number of accessions with different FCR DI in the association panel. (c) Manhattan and Q‐Q plots for FCR DI in different environments. (d) Distribution of significant SNPs revealed by GWAS on various chromosomes. (e) Haplotype analysis of significant SNPs on 4B identified at multiple environments. (f–g) Comparison of FCR DI of wheat accessions with different alleles in the block on 4B. (h) QTL mapping for FCR DI in the Bainong64/Jingshuang16 (BJ) population. (i) The schematic range of 6 candidate genes including TaDIR identified by haplotype analysis and QTL mapping. (j) Full alignment of amino acid of TaDIR‐B1 alleles between low DI and high DI accessions. (k) Development of the dCAPS marker to distinguish TaDIR‐B1 alleles. Furthermore, TaDIR‐B1 gene was silenced in the FCR‐susceptible cultivar Pingyuan 50 using virus‐induced gene silencing (VIGS) by barley stripe mosaic virus (BSMV). qRT‐PCR analysis showed significant down‐regulation of TaDIR‐B1 in VIGS‐silenced plants (Figure 1l‐2). Compared to the WT and BSMV0 plants, the lignin content in the BSMVTaDIR‐B1 plants was remarkedly increased, and the activities of superoxide dismutase (SOD), catalase (CAT) and peroxidase (POD) were also dramatically increased, but the malondialdehyde (MDA) content was significantly decreased in BSMVTaDIR‐B1 plants (Figure 1l‐4). Physiological analysis showed that lignin accumulation was dramatically increased in silenced‐TaDIR‐B1 plants. [...]improvement of FCR resistance caused by loss of function of the TaDIR‐B1 gene may be attributed to accumulation of lignin in wheat plants.</description><identifier>ISSN: 1467-7644</identifier><identifier>EISSN: 1467-7652</identifier><identifier>DOI: 10.1111/pbi.13554</identifier><identifier>PMID: 33567136</identifier><language>eng</language><publisher>England: John Wiley & Sons, Inc</publisher><subject>Accumulation ; Alleles ; Amino acids ; Antioxidants ; B1 gene ; Brief Communications ; Catalase ; Chromosomes ; common wheat ; Crown rot ; Cultivars ; Enzymes ; Fusarium ; Fusarium crown rot ; Gene mapping ; Gene silencing ; Genes ; Genomes ; Germplasm ; GWAS ; Haplotypes ; Lignin ; Malondialdehyde ; Mapping ; Mutation ; Peroxidase ; Physiology ; Proteins ; QTL mapping ; Quantitative trait loci ; R&D ; Research & development ; Single-nucleotide polymorphism ; Superoxide dismutase ; TaDIR gene ; Viruses ; Wheat</subject><ispartof>Plant biotechnology journal, 2021-05, Vol.19 (5), p.866-868</ispartof><rights>2021 The Authors. Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.</rights><rights>2021. This work is published under http://creativecommons.org/licenses/by-nc-nd/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2021. This work is published under http://creativecommons.org/licenses/by-nc-nd/4.0/ (the "License"). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4714-ce4628a52f5e2a17b0c5223fb7cefb4025d491b77f938112ecef990dcec14fd3</citedby><cites>FETCH-LOGICAL-c4714-ce4628a52f5e2a17b0c5223fb7cefb4025d491b77f938112ecef990dcec14fd3</cites><orcidid>0000-0002-7327-2969</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fpbi.13554$$EPDF$$P50$$Gwiley$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fpbi.13554$$EHTML$$P50$$Gwiley$$Hfree_for_read</linktohtml><link.rule.ids>230,314,780,784,864,885,1416,11553,27915,27916,45565,45566,46043,46467</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33567136$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yang, Xia</creatorcontrib><creatorcontrib>Zhong, Shaobin</creatorcontrib><creatorcontrib>Zhang, Qijun</creatorcontrib><creatorcontrib>Ren, Yan</creatorcontrib><creatorcontrib>Sun, Congwei</creatorcontrib><creatorcontrib>Chen, Feng</creatorcontrib><title>A loss‐of‐function of the dirigent gene TaDIR‐B1 improves resistance to Fusarium crown rot in wheat</title><title>Plant biotechnology journal</title><addtitle>Plant Biotechnol J</addtitle><description>The TaDIR gene was identified by GWAS and QTL mapping of Fusarium crown rot (FCR) resistance and was functionally verified by VIGS and analysis of tetraploid and hexaploid wheat mutants. (a): Classification of FCR disease index in the surveyed cultivars. (b) Number of accessions with different FCR DI in the association panel. (c) Manhattan and Q‐Q plots for FCR DI in different environments. (d) Distribution of significant SNPs revealed by GWAS on various chromosomes. (e) Haplotype analysis of significant SNPs on 4B identified at multiple environments. (f–g) Comparison of FCR DI of wheat accessions with different alleles in the block on 4B. (h) QTL mapping for FCR DI in the Bainong64/Jingshuang16 (BJ) population. (i) The schematic range of 6 candidate genes including TaDIR identified by haplotype analysis and QTL mapping. (j) Full alignment of amino acid of TaDIR‐B1 alleles between low DI and high DI accessions. (k) Development of the dCAPS marker to distinguish TaDIR‐B1 alleles. Furthermore, TaDIR‐B1 gene was silenced in the FCR‐susceptible cultivar Pingyuan 50 using virus‐induced gene silencing (VIGS) by barley stripe mosaic virus (BSMV). qRT‐PCR analysis showed significant down‐regulation of TaDIR‐B1 in VIGS‐silenced plants (Figure 1l‐2). Compared to the WT and BSMV0 plants, the lignin content in the BSMVTaDIR‐B1 plants was remarkedly increased, and the activities of superoxide dismutase (SOD), catalase (CAT) and peroxidase (POD) were also dramatically increased, but the malondialdehyde (MDA) content was significantly decreased in BSMVTaDIR‐B1 plants (Figure 1l‐4). Physiological analysis showed that lignin accumulation was dramatically increased in silenced‐TaDIR‐B1 plants. [...]improvement of FCR resistance caused by loss of function of the TaDIR‐B1 gene may be attributed to accumulation of lignin in wheat plants.</description><subject>Accumulation</subject><subject>Alleles</subject><subject>Amino acids</subject><subject>Antioxidants</subject><subject>B1 gene</subject><subject>Brief Communications</subject><subject>Catalase</subject><subject>Chromosomes</subject><subject>common wheat</subject><subject>Crown rot</subject><subject>Cultivars</subject><subject>Enzymes</subject><subject>Fusarium</subject><subject>Fusarium crown rot</subject><subject>Gene mapping</subject><subject>Gene silencing</subject><subject>Genes</subject><subject>Genomes</subject><subject>Germplasm</subject><subject>GWAS</subject><subject>Haplotypes</subject><subject>Lignin</subject><subject>Malondialdehyde</subject><subject>Mapping</subject><subject>Mutation</subject><subject>Peroxidase</subject><subject>Physiology</subject><subject>Proteins</subject><subject>QTL mapping</subject><subject>Quantitative trait loci</subject><subject>R&D</subject><subject>Research & development</subject><subject>Single-nucleotide polymorphism</subject><subject>Superoxide dismutase</subject><subject>TaDIR gene</subject><subject>Viruses</subject><subject>Wheat</subject><issn>1467-7644</issn><issn>1467-7652</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>WIN</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kc9uEzEQxi0EoqVw4AWQJS7lkNZ_17sXpLZQiFQJhHK3vM64cbVrB9vbqDcegWfkSXCbErVI4MN4NPPTp5n5EHpNyRGt73jd-yPKpRRP0D4VjZqpRrKnu1yIPfQi5ytCGG1k8xztcS4bRXmzj_wJHmLOv378jK4GNwVbfAw4OlxWgJc--UsIBdcAeGE-zL9V6pRiP65TvIaME2SfiwkWcIn4fMom-WnENsVNwCkW7APerMCUl-iZM0OGV_f_AVqcf1ycfZ5dfPk0Pzu5mFmhqJhZEA1rjWROAjNU9cRKxrjrlQXXC8LkUnS0V8p1vKWUQS13HVlasFS4JT9A77ey66kfoZZDSWbQ6-RHk250NF4_7gS_0pfxWreUU8LbKnB4L5Di9wly0aPPFobBBIhT1ky0rRSKcVXRt3-hV3FKoW6neR2tJW1D2P8oJlkrOkklrdS7LVUvl3MCtxuZEn3rsq4u6zuXK_vm4Y478o-tFTjeAhs_wM2_lfTX0_lW8jdGkrQf</recordid><startdate>202105</startdate><enddate>202105</enddate><creator>Yang, Xia</creator><creator>Zhong, Shaobin</creator><creator>Zhang, Qijun</creator><creator>Ren, Yan</creator><creator>Sun, Congwei</creator><creator>Chen, Feng</creator><general>John Wiley & Sons, Inc</general><general>John Wiley and Sons Inc</general><scope>24P</scope><scope>WIN</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>L6V</scope><scope>LK8</scope><scope>M7P</scope><scope>M7S</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PTHSS</scope><scope>PRINS</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-7327-2969</orcidid></search><sort><creationdate>202105</creationdate><title>A loss‐of‐function of the dirigent gene TaDIR‐B1 improves resistance to Fusarium crown rot in wheat</title><author>Yang, Xia ; 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(a): Classification of FCR disease index in the surveyed cultivars. (b) Number of accessions with different FCR DI in the association panel. (c) Manhattan and Q‐Q plots for FCR DI in different environments. (d) Distribution of significant SNPs revealed by GWAS on various chromosomes. (e) Haplotype analysis of significant SNPs on 4B identified at multiple environments. (f–g) Comparison of FCR DI of wheat accessions with different alleles in the block on 4B. (h) QTL mapping for FCR DI in the Bainong64/Jingshuang16 (BJ) population. (i) The schematic range of 6 candidate genes including TaDIR identified by haplotype analysis and QTL mapping. (j) Full alignment of amino acid of TaDIR‐B1 alleles between low DI and high DI accessions. (k) Development of the dCAPS marker to distinguish TaDIR‐B1 alleles. Furthermore, TaDIR‐B1 gene was silenced in the FCR‐susceptible cultivar Pingyuan 50 using virus‐induced gene silencing (VIGS) by barley stripe mosaic virus (BSMV). qRT‐PCR analysis showed significant down‐regulation of TaDIR‐B1 in VIGS‐silenced plants (Figure 1l‐2). Compared to the WT and BSMV0 plants, the lignin content in the BSMVTaDIR‐B1 plants was remarkedly increased, and the activities of superoxide dismutase (SOD), catalase (CAT) and peroxidase (POD) were also dramatically increased, but the malondialdehyde (MDA) content was significantly decreased in BSMVTaDIR‐B1 plants (Figure 1l‐4). Physiological analysis showed that lignin accumulation was dramatically increased in silenced‐TaDIR‐B1 plants. [...]improvement of FCR resistance caused by loss of function of the TaDIR‐B1 gene may be attributed to accumulation of lignin in wheat plants.</abstract><cop>England</cop><pub>John Wiley & Sons, Inc</pub><pmid>33567136</pmid><doi>10.1111/pbi.13554</doi><tpages>3</tpages><orcidid>https://orcid.org/0000-0002-7327-2969</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Accumulation Alleles Amino acids Antioxidants B1 gene Brief Communications Catalase Chromosomes common wheat Crown rot Cultivars Enzymes Fusarium Fusarium crown rot Gene mapping Gene silencing Genes Genomes Germplasm GWAS Haplotypes Lignin Malondialdehyde Mapping Mutation Peroxidase Physiology Proteins QTL mapping Quantitative trait loci R&D Research & development Single-nucleotide polymorphism Superoxide dismutase TaDIR gene Viruses Wheat |
| title | A loss‐of‐function of the dirigent gene TaDIR‐B1 improves resistance to Fusarium crown rot in wheat |
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