Automated download and clean-up of family-specific databases for kmer-based virus identification

Abstract Summary Here, we present an automated pipeline for Download Of NCBI Entries (DONE) and continuous updating of a local sequence database based on user-specified queries. The database can be created with either protein or nucleotide sequences containing all entries or complete genomes only. T...

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Veröffentlicht in:	Bioinformatics 2021-05, Vol.37 (5), p.705-710
Hauptverfasser:	Allesøe, Rosa L, Lemvigh, Camilla K, Phan, My V T, Clausen, Philip T L C, Florensa, Alfred F, Koopmans, Marion P G, Lund, Ole, Cotten, Matthew
Format:	Artikel
Sprache:	eng
Schlagworte:	Databases, Genetic Databases, Nucleic Acid Genome Humans Original Papers Proteins
Online-Zugang:	Volltext
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