Formation and characterization of biofilms formed by salt-tolerant yeast strains in seawater-based growth medium
Yeast whole cells have been widely used in modern biotechnology as biocatalysts to generate numerous compounds of industrial, chemical, and pharmaceutical importance. Since many of the biocatalysis-utilizing manufactures have become more concerned about environmental issues, seawater is now consider...
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description | Yeast whole cells have been widely used in modern biotechnology as biocatalysts to generate numerous compounds of industrial, chemical, and pharmaceutical importance. Since many of the biocatalysis-utilizing manufactures have become more concerned about environmental issues, seawater is now considered a sustainable alternative to freshwater for biocatalytic processes. This approach plausibly commenced new research initiatives into exploration of salt-tolerant yeast strains. Recently, there has also been a growing interest in possible applications of microbial biofilms in the field of biocatalysis. In these complex communities, cells demonstrate higher resistance to adverse environmental conditions due to their embedment in an extracellular matrix, in which physical, chemical, and physiological gradients exist. Considering these two topics, seawater and biofilms, in this work, we characterized biofilm formation in seawater-based growth media by several salt-tolerant yeast strains with previously demonstrated biocatalytic capacities. The tested strains formed both air-liquid-like biofilms and biofilms on silicone surfaces, with
Debaryomyces fabryi
,
Schwanniomyces etchellsii
,
Schwanniomyces polymorphus
, and
Kluyveromyces marxianus
showing the highest biofilm formation. The extracted biofilm extracellular matrices mostly consisted of carbohydrates and proteins. The latter group was primarily represented by enzymes involved in metabolic processes, particularly the biosynthetic ones, and in the response to stimuli. Specific features were also found in the carbohydrate composition of the extracellular matrix, which were dependent both on the yeast isolate and the nature of formed biofilms. Overall, our findings presented herein provide a unique data resource for further development and optimization of biocatalytic processes and applications employing seawater and halotolerant yeast biofilms.
Key points
•
Ability for biofilm formation of some yeast-halotolerant strains in seawater medium
•
ECM composition dependent on strain and biofilm-forming surface
•
Metabolic enzymes in the ECM with potential applications for biocatalysis
Graphical abstract |
doi_str_mv | 10.1007/s00253-021-11132-1 |
format | Article |
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Debaryomyces fabryi
,
Schwanniomyces etchellsii
,
Schwanniomyces polymorphus
, and
Kluyveromyces marxianus
showing the highest biofilm formation. The extracted biofilm extracellular matrices mostly consisted of carbohydrates and proteins. The latter group was primarily represented by enzymes involved in metabolic processes, particularly the biosynthetic ones, and in the response to stimuli. Specific features were also found in the carbohydrate composition of the extracellular matrix, which were dependent both on the yeast isolate and the nature of formed biofilms. Overall, our findings presented herein provide a unique data resource for further development and optimization of biocatalytic processes and applications employing seawater and halotolerant yeast biofilms.
Key points
•
Ability for biofilm formation of some yeast-halotolerant strains in seawater medium
•
ECM composition dependent on strain and biofilm-forming surface
•
Metabolic enzymes in the ECM with potential applications for biocatalysis
Graphical abstract</description><identifier>ISSN: 0175-7598</identifier><identifier>EISSN: 1432-0614</identifier><identifier>DOI: 10.1007/s00253-021-11132-1</identifier><identifier>PMID: 33630153</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Adaptation (Physiology) ; Analysis ; Applied Microbial and Cell Physiology ; Biocatalysts ; Biofilms ; Biomedical and Life Sciences ; Biotechnology ; Carbohydrate composition ; Carbohydrates ; Catalysis ; Chemical compounds ; Composition ; Culture media ; Culture media (Biology) ; Environmental conditions ; Enzymes ; Extracellular matrix ; Growth ; Growth media ; Identification and classification ; Kluyveromyces ; Life Sciences ; Materials ; Metabolism ; Microbial Genetics and Genomics ; Microbial mats ; Microbiology ; Microorganisms ; Optimization ; Physiological aspects ; R&D ; Research & development ; Saccharomycetales ; Salinity tolerance ; Salts ; Sea-water ; Seawater ; Silicones ; Yeast ; Yeast fungi ; Yeasts</subject><ispartof>Applied microbiology and biotechnology, 2021-03, Vol.105 (6), p.2411-2426</ispartof><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH, DE part of Springer Nature 2021</rights><rights>COPYRIGHT 2021 Springer</rights><rights>The Author(s), under exclusive licence to Springer-Verlag GmbH, DE part of Springer Nature 2021.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c612t-b95c55e3ca8c7c262945316c3f2c64abe818096d68a40edae761156181d254853</citedby><cites>FETCH-LOGICAL-c612t-b95c55e3ca8c7c262945316c3f2c64abe818096d68a40edae761156181d254853</cites><orcidid>0000-0002-6286-650X ; 0000-0003-2324-9944 ; 0000-0001-6343-1500 ; 0000-0002-7927-9950</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00253-021-11132-1$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00253-021-11132-1$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>230,314,780,784,885,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33630153$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zarnowski, Robert</creatorcontrib><creatorcontrib>Sanchez, Hiram</creatorcontrib><creatorcontrib>Andreu, Cecilia</creatorcontrib><creatorcontrib>Andes, David</creatorcontrib><creatorcontrib>del Olmo, Marcel·lí</creatorcontrib><title>Formation and characterization of biofilms formed by salt-tolerant yeast strains in seawater-based growth medium</title><title>Applied microbiology and biotechnology</title><addtitle>Appl Microbiol Biotechnol</addtitle><addtitle>Appl Microbiol Biotechnol</addtitle><description>Yeast whole cells have been widely used in modern biotechnology as biocatalysts to generate numerous compounds of industrial, chemical, and pharmaceutical importance. Since many of the biocatalysis-utilizing manufactures have become more concerned about environmental issues, seawater is now considered a sustainable alternative to freshwater for biocatalytic processes. This approach plausibly commenced new research initiatives into exploration of salt-tolerant yeast strains. Recently, there has also been a growing interest in possible applications of microbial biofilms in the field of biocatalysis. In these complex communities, cells demonstrate higher resistance to adverse environmental conditions due to their embedment in an extracellular matrix, in which physical, chemical, and physiological gradients exist. Considering these two topics, seawater and biofilms, in this work, we characterized biofilm formation in seawater-based growth media by several salt-tolerant yeast strains with previously demonstrated biocatalytic capacities. The tested strains formed both air-liquid-like biofilms and biofilms on silicone surfaces, with
Debaryomyces fabryi
,
Schwanniomyces etchellsii
,
Schwanniomyces polymorphus
, and
Kluyveromyces marxianus
showing the highest biofilm formation. The extracted biofilm extracellular matrices mostly consisted of carbohydrates and proteins. The latter group was primarily represented by enzymes involved in metabolic processes, particularly the biosynthetic ones, and in the response to stimuli. Specific features were also found in the carbohydrate composition of the extracellular matrix, which were dependent both on the yeast isolate and the nature of formed biofilms. Overall, our findings presented herein provide a unique data resource for further development and optimization of biocatalytic processes and applications employing seawater and halotolerant yeast biofilms.
Key points
•
Ability for biofilm formation of some yeast-halotolerant strains in seawater medium
•
ECM composition dependent on strain and biofilm-forming surface
•
Metabolic enzymes in the ECM with potential applications for biocatalysis
Graphical abstract</description><subject>Adaptation (Physiology)</subject><subject>Analysis</subject><subject>Applied Microbial and Cell Physiology</subject><subject>Biocatalysts</subject><subject>Biofilms</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Carbohydrate composition</subject><subject>Carbohydrates</subject><subject>Catalysis</subject><subject>Chemical compounds</subject><subject>Composition</subject><subject>Culture media</subject><subject>Culture media (Biology)</subject><subject>Environmental conditions</subject><subject>Enzymes</subject><subject>Extracellular matrix</subject><subject>Growth</subject><subject>Growth media</subject><subject>Identification and classification</subject><subject>Kluyveromyces</subject><subject>Life Sciences</subject><subject>Materials</subject><subject>Metabolism</subject><subject>Microbial Genetics and Genomics</subject><subject>Microbial mats</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Optimization</subject><subject>Physiological aspects</subject><subject>R&D</subject><subject>Research & development</subject><subject>Saccharomycetales</subject><subject>Salinity tolerance</subject><subject>Salts</subject><subject>Sea-water</subject><subject>Seawater</subject><subject>Silicones</subject><subject>Yeast</subject><subject>Yeast 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and characterization of biofilms formed by salt-tolerant yeast strains in seawater-based growth medium</title><author>Zarnowski, Robert ; Sanchez, Hiram ; Andreu, Cecilia ; Andes, David ; del Olmo, Marcel·lí</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c612t-b95c55e3ca8c7c262945316c3f2c64abe818096d68a40edae761156181d254853</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Adaptation (Physiology)</topic><topic>Analysis</topic><topic>Applied Microbial and Cell Physiology</topic><topic>Biocatalysts</topic><topic>Biofilms</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Carbohydrate composition</topic><topic>Carbohydrates</topic><topic>Catalysis</topic><topic>Chemical compounds</topic><topic>Composition</topic><topic>Culture media</topic><topic>Culture media (Biology)</topic><topic>Environmental conditions</topic><topic>Enzymes</topic><topic>Extracellular matrix</topic><topic>Growth</topic><topic>Growth media</topic><topic>Identification and classification</topic><topic>Kluyveromyces</topic><topic>Life Sciences</topic><topic>Materials</topic><topic>Metabolism</topic><topic>Microbial Genetics and Genomics</topic><topic>Microbial mats</topic><topic>Microbiology</topic><topic>Microorganisms</topic><topic>Optimization</topic><topic>Physiological aspects</topic><topic>R&D</topic><topic>Research & development</topic><topic>Saccharomycetales</topic><topic>Salinity tolerance</topic><topic>Salts</topic><topic>Sea-water</topic><topic>Seawater</topic><topic>Silicones</topic><topic>Yeast</topic><topic>Yeast fungi</topic><topic>Yeasts</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zarnowski, Robert</creatorcontrib><creatorcontrib>Sanchez, Hiram</creatorcontrib><creatorcontrib>Andreu, Cecilia</creatorcontrib><creatorcontrib>Andes, 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yeast strains in seawater-based growth medium</atitle><jtitle>Applied microbiology and biotechnology</jtitle><stitle>Appl Microbiol Biotechnol</stitle><addtitle>Appl Microbiol Biotechnol</addtitle><date>2021-03-01</date><risdate>2021</risdate><volume>105</volume><issue>6</issue><spage>2411</spage><epage>2426</epage><pages>2411-2426</pages><issn>0175-7598</issn><eissn>1432-0614</eissn><abstract>Yeast whole cells have been widely used in modern biotechnology as biocatalysts to generate numerous compounds of industrial, chemical, and pharmaceutical importance. Since many of the biocatalysis-utilizing manufactures have become more concerned about environmental issues, seawater is now considered a sustainable alternative to freshwater for biocatalytic processes. This approach plausibly commenced new research initiatives into exploration of salt-tolerant yeast strains. Recently, there has also been a growing interest in possible applications of microbial biofilms in the field of biocatalysis. In these complex communities, cells demonstrate higher resistance to adverse environmental conditions due to their embedment in an extracellular matrix, in which physical, chemical, and physiological gradients exist. Considering these two topics, seawater and biofilms, in this work, we characterized biofilm formation in seawater-based growth media by several salt-tolerant yeast strains with previously demonstrated biocatalytic capacities. The tested strains formed both air-liquid-like biofilms and biofilms on silicone surfaces, with
Debaryomyces fabryi
,
Schwanniomyces etchellsii
,
Schwanniomyces polymorphus
, and
Kluyveromyces marxianus
showing the highest biofilm formation. The extracted biofilm extracellular matrices mostly consisted of carbohydrates and proteins. The latter group was primarily represented by enzymes involved in metabolic processes, particularly the biosynthetic ones, and in the response to stimuli. Specific features were also found in the carbohydrate composition of the extracellular matrix, which were dependent both on the yeast isolate and the nature of formed biofilms. Overall, our findings presented herein provide a unique data resource for further development and optimization of biocatalytic processes and applications employing seawater and halotolerant yeast biofilms.
Key points
•
Ability for biofilm formation of some yeast-halotolerant strains in seawater medium
•
ECM composition dependent on strain and biofilm-forming surface
•
Metabolic enzymes in the ECM with potential applications for biocatalysis
Graphical abstract</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>33630153</pmid><doi>10.1007/s00253-021-11132-1</doi><tpages>16</tpages><orcidid>https://orcid.org/0000-0002-6286-650X</orcidid><orcidid>https://orcid.org/0000-0003-2324-9944</orcidid><orcidid>https://orcid.org/0000-0001-6343-1500</orcidid><orcidid>https://orcid.org/0000-0002-7927-9950</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Adaptation (Physiology) Analysis Applied Microbial and Cell Physiology Biocatalysts Biofilms Biomedical and Life Sciences Biotechnology Carbohydrate composition Carbohydrates Catalysis Chemical compounds Composition Culture media Culture media (Biology) Environmental conditions Enzymes Extracellular matrix Growth Growth media Identification and classification Kluyveromyces Life Sciences Materials Metabolism Microbial Genetics and Genomics Microbial mats Microbiology Microorganisms Optimization Physiological aspects R&D Research & development Saccharomycetales Salinity tolerance Salts Sea-water Seawater Silicones Yeast Yeast fungi Yeasts |
title | Formation and characterization of biofilms formed by salt-tolerant yeast strains in seawater-based growth medium |
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