Genomic analysis of bacteriophage Xoo-sp13 infecting Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae is a bacterial pathogen that gives rise to diseases in rice all over the world. A bacteriophage infecting this bacterium was isolated from rice fields in China. Here, we report the complete genome sequence of this phage, which has a linear dsDNA genome of 309,023 bp and...
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| Veröffentlicht in: | Archives of virology 2021-04, Vol.166 (4), p.1263-1265 |
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| creator | Nazir, Amina Dong, Zhaoxia Liu, Jin Tahir, Rana Adnan Rasheed, Madiha Qing, Hong Peng, Donghai Tong, Yigang |
| description | Xanthomonas oryzae
pv.
oryzae
is a bacterial pathogen that gives rise to diseases in rice all over the world. A bacteriophage infecting this bacterium was isolated from rice fields in China. Here, we report the complete genome sequence of this phage, which has a linear dsDNA genome of 309,023 bp and a G + C content of 42.43%. It contains 401 open reading frames and encodes 28 tRNAs. It belongs to the family
Myoviridae
and has a broad host range, making it a possible candidate for phage therapy
. |
| doi_str_mv | 10.1007/s00705-021-04985-4 |
| format | Article |
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pv.
oryzae
is a bacterial pathogen that gives rise to diseases in rice all over the world. A bacteriophage infecting this bacterium was isolated from rice fields in China. Here, we report the complete genome sequence of this phage, which has a linear dsDNA genome of 309,023 bp and a G + C content of 42.43%. It contains 401 open reading frames and encodes 28 tRNAs. It belongs to the family
Myoviridae
and has a broad host range, making it a possible candidate for phage therapy
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pv.
oryzae
is a bacterial pathogen that gives rise to diseases in rice all over the world. A bacteriophage infecting this bacterium was isolated from rice fields in China. Here, we report the complete genome sequence of this phage, which has a linear dsDNA genome of 309,023 bp and a G + C content of 42.43%. It contains 401 open reading frames and encodes 28 tRNAs. It belongs to the family
Myoviridae
and has a broad host range, making it a possible candidate for phage therapy
.</description><subject>Annotated Sequence Record</subject><subject>Bacteriophages - classification</subject><subject>Bacteriophages - genetics</subject><subject>Bacteriophages - isolation & purification</subject><subject>Base Composition</subject><subject>Base Sequence</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>DNA, Viral - genetics</subject><subject>Genome, Viral - genetics</subject><subject>Genomes</subject><subject>Genomic analysis</subject><subject>Host range</subject><subject>Host Specificity</subject><subject>Infectious Diseases</subject><subject>Medical Microbiology</subject><subject>Myoviridae - classification</subject><subject>Myoviridae - genetics</subject><subject>Myoviridae - isolation & purification</subject><subject>Nucleotide sequence</subject><subject>Open Reading Frames</subject><subject>Oryza - microbiology</subject><subject>Phages</subject><subject>Plant Diseases - microbiology</subject><subject>Rice fields</subject><subject>RNA, Transfer - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Sequence Homology</subject><subject>Soil Microbiology</subject><subject>Virology</subject><subject>Xanthomonas - virology</subject><subject>Xanthomonas oryzae</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kU9rVDEUxYModqx-ARfywI2b1Jt_k2QjSGmrUBCkhe5CJi-ZSXkveSZvCuOnN3XGWrtwk4Tc3z05uQehtwROCID8WNsCAgMlGLhWAvNnaEE4o1hJrZ6jBTDgWC1BHaFXtd4CtAsmXqIjxoQSegkL9P3CpzxG19lkh12NtcuhW1k3-xLztLFr393kjOtEWBdT8G6Oad3d2DRv8piTbXzZ_bS-m-5ODsfX6EWwQ_VvDvsxuj4_uzr9gi-_XXw9_XyJHZd8xisKPvTSqd4vGVOaWdYTTVzQIjSnxDHKwzKABtsTyrQVYaVpr3opgrcU2DH6tNedtqvR986nudjBTCWOtuxMttH8W0lxY9b5zkgtQVHWBD4cBEr-sfV1NmOszg-DTT5vq6FcadHmykhD3z9Bb_O2tJE1SjSzUhEpGkX3lCu51uLDgxkC5j4ys4_MtMjM78gMb03vHn_joeVPRg1ge6C2Ulr78vft_8j-Au6SomM</recordid><startdate>20210401</startdate><enddate>20210401</enddate><creator>Nazir, Amina</creator><creator>Dong, Zhaoxia</creator><creator>Liu, Jin</creator><creator>Tahir, Rana Adnan</creator><creator>Rasheed, Madiha</creator><creator>Qing, Hong</creator><creator>Peng, Donghai</creator><creator>Tong, Yigang</creator><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-3126-5864</orcidid></search><sort><creationdate>20210401</creationdate><title>Genomic analysis of bacteriophage Xoo-sp13 infecting Xanthomonas oryzae pv. oryzae</title><author>Nazir, Amina ; Dong, Zhaoxia ; Liu, Jin ; Tahir, Rana Adnan ; Rasheed, Madiha ; Qing, Hong ; Peng, Donghai ; Tong, Yigang</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c474t-b20efd7c8de633893a3d191cf95f0001c324f6f090ad1239a5fb92d8d75fea203</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Annotated Sequence Record</topic><topic>Bacteriophages - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Nazir, Amina</au><au>Dong, Zhaoxia</au><au>Liu, Jin</au><au>Tahir, Rana Adnan</au><au>Rasheed, Madiha</au><au>Qing, Hong</au><au>Peng, Donghai</au><au>Tong, Yigang</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genomic analysis of bacteriophage Xoo-sp13 infecting Xanthomonas oryzae pv. oryzae</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2021-04-01</date><risdate>2021</risdate><volume>166</volume><issue>4</issue><spage>1263</spage><epage>1265</epage><pages>1263-1265</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>Xanthomonas oryzae
pv.
oryzae
is a bacterial pathogen that gives rise to diseases in rice all over the world. A bacteriophage infecting this bacterium was isolated from rice fields in China. Here, we report the complete genome sequence of this phage, which has a linear dsDNA genome of 309,023 bp and a G + C content of 42.43%. It contains 401 open reading frames and encodes 28 tRNAs. It belongs to the family
Myoviridae
and has a broad host range, making it a possible candidate for phage therapy
.</abstract><cop>Vienna</cop><pub>Springer Vienna</pub><pmid>33585960</pmid><doi>10.1007/s00705-021-04985-4</doi><tpages>3</tpages><orcidid>https://orcid.org/0000-0003-3126-5864</orcidid><oa>free_for_read</oa></addata></record> |
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| identifier | ISSN: 0304-8608 |
| ispartof | Archives of virology, 2021-04, Vol.166 (4), p.1263-1265 |
| issn | 0304-8608 1432-8798 |
| language | eng |
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| source | MEDLINE; SpringerLink Journals - AutoHoldings |
| subjects | Annotated Sequence Record Bacteriophages - classification Bacteriophages - genetics Bacteriophages - isolation & purification Base Composition Base Sequence Biomedical and Life Sciences Biomedicine DNA, Viral - genetics Genome, Viral - genetics Genomes Genomic analysis Host range Host Specificity Infectious Diseases Medical Microbiology Myoviridae - classification Myoviridae - genetics Myoviridae - isolation & purification Nucleotide sequence Open Reading Frames Oryza - microbiology Phages Plant Diseases - microbiology Rice fields RNA, Transfer - genetics Sequence Analysis, DNA Sequence Homology Soil Microbiology Virology Xanthomonas - virology Xanthomonas oryzae |
| title | Genomic analysis of bacteriophage Xoo-sp13 infecting Xanthomonas oryzae pv. oryzae |
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