AP-1 imprints a reversible transcriptional programme of senescent cells
Senescent cells affect many physiological and pathophysiological processes. While select genetic and epigenetic elements for senescence induction have been identified, the dynamics, epigenetic mechanisms and regulatory networks defining senescence competence, induction and maintenance remain poorly...
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Veröffentlicht in: | Nature cell biology 2020-07, Vol.22 (7), p.842-855 |
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creator | Martínez-Zamudio, Ricardo Iván Roux, Pierre-François de Freitas, José Américo N.L.F. Robinson, Lucas Doré, Gregory Sun, Bin Belenki, Dimitri Milanovic, Maja Herbig, Utz Schmitt, Clemens A. Gil, Jesús Bischof, Oliver |
description | Senescent cells affect many physiological and pathophysiological processes. While select genetic and epigenetic elements for senescence induction have been identified, the dynamics, epigenetic mechanisms and regulatory networks defining senescence competence, induction and maintenance remain poorly understood, precluding the deliberate therapeutic targeting of senescence for health benefits. Here, we examined the possibility that the epigenetic state of enhancers determines senescent cell fate. We explored this by generating time-resolved transcriptomes and epigenome profiles during oncogenic RAS-induced senescence and validating central findings in different cell biology and disease models of senescence. Through integrative analysis and functional validation, we reveal links between enhancer chromatin, transcription factor recruitment and senescence competence. We demonstrate that activator protein 1 (AP-1) ‘pioneers’ the senescence enhancer landscape and defines the organizational principles of the transcription factor network that drives the transcriptional programme of senescent cells. Together, our findings enabled us to manipulate the senescence phenotype with potential therapeutic implications.
Bischof and colleagues report that AP-1 bookmarks prospective senescence enhancers for future activation to achieve a timely execution of the senescence programme. |
doi_str_mv | 10.1038/s41556-020-0529-5 |
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Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>COPYRIGHT 2020 Nature Publishing Group</rights><rights>The Author(s), under exclusive licence to Springer Nature Limited 2020.</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>true</woscitedreferencessubscribed><woscitedreferencescount>112</woscitedreferencescount><woscitedreferencesoriginalsourcerecordid>wos000538965600001</woscitedreferencesoriginalsourcerecordid><citedby>FETCH-LOGICAL-c633t-3bc406f582ab64b1fce44337595eab8b2b5f8d2fbafadd5eeabe553fabdade8d3</citedby><cites>FETCH-LOGICAL-c633t-3bc406f582ab64b1fce44337595eab8b2b5f8d2fbafadd5eeabe553fabdade8d3</cites><orcidid>0000-0002-8963-4100 ; 0000-0003-3689-765X ; 0000-0003-2422-6277 ; 0000-0001-9202-4285 ; 0000-0002-9004-9849 ; 0000-0003-1860-6003 ; 0000-0002-4303-6260 ; 0000-0002-4731-2226 ; 0000-0002-0695-4206 ; 0000-0003-1051-6011</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,315,781,785,886,27929,27930,28253</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32514071$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.science/hal-03021473$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Martínez-Zamudio, Ricardo Iván</creatorcontrib><creatorcontrib>Roux, Pierre-François</creatorcontrib><creatorcontrib>de Freitas, José Américo N.L.F.</creatorcontrib><creatorcontrib>Robinson, Lucas</creatorcontrib><creatorcontrib>Doré, Gregory</creatorcontrib><creatorcontrib>Sun, Bin</creatorcontrib><creatorcontrib>Belenki, Dimitri</creatorcontrib><creatorcontrib>Milanovic, Maja</creatorcontrib><creatorcontrib>Herbig, Utz</creatorcontrib><creatorcontrib>Schmitt, Clemens A.</creatorcontrib><creatorcontrib>Gil, Jesús</creatorcontrib><creatorcontrib>Bischof, Oliver</creatorcontrib><title>AP-1 imprints a reversible transcriptional programme of senescent cells</title><title>Nature cell biology</title><addtitle>Nat Cell Biol</addtitle><addtitle>NAT CELL BIOL</addtitle><addtitle>Nat Cell Biol</addtitle><description>Senescent cells affect many physiological and pathophysiological processes. While select genetic and epigenetic elements for senescence induction have been identified, the dynamics, epigenetic mechanisms and regulatory networks defining senescence competence, induction and maintenance remain poorly understood, precluding the deliberate therapeutic targeting of senescence for health benefits. Here, we examined the possibility that the epigenetic state of enhancers determines senescent cell fate. We explored this by generating time-resolved transcriptomes and epigenome profiles during oncogenic RAS-induced senescence and validating central findings in different cell biology and disease models of senescence. Through integrative analysis and functional validation, we reveal links between enhancer chromatin, transcription factor recruitment and senescence competence. We demonstrate that activator protein 1 (AP-1) ‘pioneers’ the senescence enhancer landscape and defines the organizational principles of the transcription factor network that drives the transcriptional programme of senescent cells. Together, our findings enabled us to manipulate the senescence phenotype with potential therapeutic implications.
Bischof and colleagues report that AP-1 bookmarks prospective senescence enhancers for future activation to achieve a timely execution of the senescence programme.</description><subject>13/1</subject><subject>13/106</subject><subject>13/31</subject><subject>14</subject><subject>14/19</subject><subject>38/22</subject><subject>38/77</subject><subject>38/89</subject><subject>42/109</subject><subject>42/41</subject><subject>45/15</subject><subject>45/23</subject><subject>45/61</subject><subject>631/114/2114</subject><subject>631/114/2163</subject><subject>631/337/100/2285</subject><subject>631/337/2019</subject><subject>631/80/509</subject><subject>64/60</subject><subject>Activator protein 1</subject><subject>Analysis</subject><subject>Animals</subject><subject>Biomedical and Life Sciences</subject><subject>Cancer Research</subject><subject>Cell Biology</subject><subject>Cell culture</subject><subject>Cell fate</subject><subject>Cellular Senescence</subject><subject>Chromatin</subject><subject>Chromatin - 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While select genetic and epigenetic elements for senescence induction have been identified, the dynamics, epigenetic mechanisms and regulatory networks defining senescence competence, induction and maintenance remain poorly understood, precluding the deliberate therapeutic targeting of senescence for health benefits. Here, we examined the possibility that the epigenetic state of enhancers determines senescent cell fate. We explored this by generating time-resolved transcriptomes and epigenome profiles during oncogenic RAS-induced senescence and validating central findings in different cell biology and disease models of senescence. Through integrative analysis and functional validation, we reveal links between enhancer chromatin, transcription factor recruitment and senescence competence. We demonstrate that activator protein 1 (AP-1) ‘pioneers’ the senescence enhancer landscape and defines the organizational principles of the transcription factor network that drives the transcriptional programme of senescent cells. Together, our findings enabled us to manipulate the senescence phenotype with potential therapeutic implications.
Bischof and colleagues report that AP-1 bookmarks prospective senescence enhancers for future activation to achieve a timely execution of the senescence programme.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>32514071</pmid><doi>10.1038/s41556-020-0529-5</doi><tpages>14</tpages><orcidid>https://orcid.org/0000-0002-8963-4100</orcidid><orcidid>https://orcid.org/0000-0003-3689-765X</orcidid><orcidid>https://orcid.org/0000-0003-2422-6277</orcidid><orcidid>https://orcid.org/0000-0001-9202-4285</orcidid><orcidid>https://orcid.org/0000-0002-9004-9849</orcidid><orcidid>https://orcid.org/0000-0003-1860-6003</orcidid><orcidid>https://orcid.org/0000-0002-4303-6260</orcidid><orcidid>https://orcid.org/0000-0002-4731-2226</orcidid><orcidid>https://orcid.org/0000-0002-0695-4206</orcidid><orcidid>https://orcid.org/0000-0003-1051-6011</orcidid><oa>free_for_read</oa></addata></record> |
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recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_7899185 |
source | MEDLINE; Nature; Web of Science - Science Citation Index Expanded - 2020<img src="https://exlibris-pub.s3.amazonaws.com/fromwos-v2.jpg" />; Alma/SFX Local Collection |
subjects | 13/1 13/106 13/31 14 14/19 38/22 38/77 38/89 42/109 42/41 45/15 45/23 45/61 631/114/2114 631/114/2163 631/337/100/2285 631/337/2019 631/80/509 64/60 Activator protein 1 Analysis Animals Biomedical and Life Sciences Cancer Research Cell Biology Cell culture Cell fate Cellular Senescence Chromatin Chromatin - genetics Chromatin - metabolism Developmental Biology Enhancers Epigenesis, Genetic Epigenetic inheritance Epigenetics Female Fibroblasts Fibroblasts - cytology Fibroblasts - metabolism Gene Expression Regulation Genetic transcription Health aspects Histones Histones - genetics Histones - metabolism Humans Life Sciences Life Sciences & Biomedicine Mice, Inbred C57BL Phenotypes Physiological aspects Science & Technology Scientific equipment and supplies industry Senescence Stem Cells Therapeutic targets Transcription Factor AP-1 Transcription Factor AP-1 - genetics Transcription Factor AP-1 - metabolism Transcription factors Transcriptome Transcriptomes |
title | AP-1 imprints a reversible transcriptional programme of senescent cells |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-12T06%3A15%3A21IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=AP-1%20imprints%20a%20reversible%20transcriptional%20programme%20of%20senescent%20cells&rft.jtitle=Nature%20cell%20biology&rft.au=Mart%C3%ADnez-Zamudio,%20Ricardo%20Iv%C3%A1n&rft.date=2020-07-01&rft.volume=22&rft.issue=7&rft.spage=842&rft.epage=855&rft.pages=842-855&rft.issn=1465-7392&rft.eissn=1476-4679&rft_id=info:doi/10.1038/s41556-020-0529-5&rft_dat=%3Cgale_pubme%3EA628784161%3C/gale_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2420333914&rft_id=info:pmid/32514071&rft_galeid=A628784161&rfr_iscdi=true |