Abundant Chitinous Structures in Chilostomella (Foraminifera, Rhizaria) and Their Potential Functions
Benthic foraminifera, members of Rhizaria, inhabit a broad range of marine environments and are particularly common in hypoxic sediments. The biology of benthic foraminifera is key to understanding benthic ecosystems and relevant biogeochemical cycles, especially in hypoxic environments. Chilostomel...
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description | Benthic foraminifera, members of Rhizaria, inhabit a broad range of marine environments and are particularly common in hypoxic sediments. The biology of benthic foraminifera is key to understanding benthic ecosystems and relevant biogeochemical cycles, especially in hypoxic environments. Chilostomella is a foraminiferal genus commonly found in hypoxic deep‐sea sediments and has poorly understood ecological characteristics. For example, the carbon isotopic compositions of their lipids are substantially different from other co‐occurring genera, probably reflecting unique features of its metabolism. Here, we investigated the cytoplasmic and ultrastructural features of Chilostomella ovoidea from bathyal sediments of Sagami Bay, Japan, based on serial semi‐thin sections examined using an optical microscope followed by a three‐dimensional reconstruction, combined with TEM observations of ultra‐thin sections. Observations by TEM revealed the presence of abundant electron‐dense structures dividing the cytoplasm. Based on histochemical staining, these structures are shown to be composed of chitin. Our 3D reconstruction revealed chitinous structures in the final seven chambers. These exhibited a plate‐like morphology in the final chambers but became rolled up in earlier chambers (toward the proloculus). These chitinous, plate‐like structures may function to partition the cytoplasm in a chamber to increase the surface/volume ratio and/or act as a reactive site for some metabolic functions. |
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The biology of benthic foraminifera is key to understanding benthic ecosystems and relevant biogeochemical cycles, especially in hypoxic environments. Chilostomella is a foraminiferal genus commonly found in hypoxic deep‐sea sediments and has poorly understood ecological characteristics. For example, the carbon isotopic compositions of their lipids are substantially different from other co‐occurring genera, probably reflecting unique features of its metabolism. Here, we investigated the cytoplasmic and ultrastructural features of Chilostomella ovoidea from bathyal sediments of Sagami Bay, Japan, based on serial semi‐thin sections examined using an optical microscope followed by a three‐dimensional reconstruction, combined with TEM observations of ultra‐thin sections. Observations by TEM revealed the presence of abundant electron‐dense structures dividing the cytoplasm. Based on histochemical staining, these structures are shown to be composed of chitin. Our 3D reconstruction revealed chitinous structures in the final seven chambers. These exhibited a plate‐like morphology in the final chambers but became rolled up in earlier chambers (toward the proloculus). These chitinous, plate‐like structures may function to partition the cytoplasm in a chamber to increase the surface/volume ratio and/or act as a reactive site for some metabolic functions.</description><identifier>ISSN: 1066-5234</identifier><identifier>EISSN: 1550-7408</identifier><identifier>DOI: 10.1111/jeu.12828</identifier><identifier>PMID: 33128276</identifier><language>eng</language><publisher>United States: Wiley Subscription Services, Inc</publisher><subject>3D reconstruction ; Abundance ; Benthos ; Biogeochemical cycle ; Biogeochemical cycles ; Biogeochemistry ; Biology ; Chilostomella ; Chitin ; Chitin - ultrastructure ; Cytoplasm ; Foraminifera ; Foraminifera - ultrastructure ; Hypoxia ; hypoxic adaptation ; Japan ; Lipids ; Marine environment ; Metabolism ; Microscopy, Electron, Transmission ; Original ; Sediments ; Structures ; ultrastructure</subject><ispartof>The Journal of eukaryotic microbiology, 2021-01, Vol.68 (1), p.e12828-n/a</ispartof><rights>2020 The Authors. published by Wiley Periodicals LLC on behalf of International Society of Protistologists</rights><rights>2020 The Authors. 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The biology of benthic foraminifera is key to understanding benthic ecosystems and relevant biogeochemical cycles, especially in hypoxic environments. Chilostomella is a foraminiferal genus commonly found in hypoxic deep‐sea sediments and has poorly understood ecological characteristics. For example, the carbon isotopic compositions of their lipids are substantially different from other co‐occurring genera, probably reflecting unique features of its metabolism. Here, we investigated the cytoplasmic and ultrastructural features of Chilostomella ovoidea from bathyal sediments of Sagami Bay, Japan, based on serial semi‐thin sections examined using an optical microscope followed by a three‐dimensional reconstruction, combined with TEM observations of ultra‐thin sections. Observations by TEM revealed the presence of abundant electron‐dense structures dividing the cytoplasm. Based on histochemical staining, these structures are shown to be composed of chitin. Our 3D reconstruction revealed chitinous structures in the final seven chambers. These exhibited a plate‐like morphology in the final chambers but became rolled up in earlier chambers (toward the proloculus). These chitinous, plate‐like structures may function to partition the cytoplasm in a chamber to increase the surface/volume ratio and/or act as a reactive site for some metabolic functions.</description><subject>3D reconstruction</subject><subject>Abundance</subject><subject>Benthos</subject><subject>Biogeochemical cycle</subject><subject>Biogeochemical cycles</subject><subject>Biogeochemistry</subject><subject>Biology</subject><subject>Chilostomella</subject><subject>Chitin</subject><subject>Chitin - ultrastructure</subject><subject>Cytoplasm</subject><subject>Foraminifera</subject><subject>Foraminifera - ultrastructure</subject><subject>Hypoxia</subject><subject>hypoxic adaptation</subject><subject>Japan</subject><subject>Lipids</subject><subject>Marine environment</subject><subject>Metabolism</subject><subject>Microscopy, Electron, Transmission</subject><subject>Original</subject><subject>Sediments</subject><subject>Structures</subject><subject>ultrastructure</subject><issn>1066-5234</issn><issn>1550-7408</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>EIF</sourceid><recordid>eNp1kV9LHDEUxUNRqtU-9AtIwJcVOprMZJLMS0EWtypCi90-h0wm080yk2j-tOinN-OqVMH7ksu9Pw7n5gDwBaNjnOtkrdMxLnnJP4BdXNeoYATxrdwjSou6rMgO-BTCGiFMS4w_gp2qmnBGd4E-bZPtpI1wvjLRWJcC_BV9UjF5HaCx03xwIbpRD4OEs4XzcjTW9NrLr_B6Ze6lN_IIStvB5UobD3-6qG00coCLZFU0zoZ9sN3LIejPT-8eWC7OlvPz4urH94v56VWhCKl40UveIoKo6mvWt10jm1JS1LSEqXJy3qqaYs1V29C8qjHpdcNa0iNWEtaxag9828jepHbUnco2vBzEjTej9HfCSSNeb6xZiT_ur2C8IaThWWD2JODdbdIhitEENR1udf4ZUZKaEoxZ1WT08A26dsnbfF2mGM8UxZOjow2lvAvB6_7FDEZiyk7k7MRjdpk9-N_9C_kcVgZONsA_M-i795XE5dnvjeQD5eOkbQ</recordid><startdate>202101</startdate><enddate>202101</enddate><creator>Nomaki, Hidetaka</creator><creator>Chen, Chong</creator><creator>Oda, Kaya</creator><creator>Tsuchiya, Masashi</creator><creator>Tame, Akihiro</creator><creator>Uematsu, Katsuyuki</creator><creator>Isobe, Noriyuki</creator><general>Wiley Subscription Services, Inc</general><general>John Wiley and Sons Inc</general><scope>24P</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7TN</scope><scope>8FD</scope><scope>F1W</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0001-8571-3373</orcidid><orcidid>https://orcid.org/0000-0002-5035-4021</orcidid><orcidid>https://orcid.org/0000-0002-7577-5076</orcidid><orcidid>https://orcid.org/0000-0001-8179-4030</orcidid></search><sort><creationdate>202101</creationdate><title>Abundant Chitinous Structures in Chilostomella (Foraminifera, Rhizaria) and Their Potential Functions</title><author>Nomaki, Hidetaka ; Chen, Chong ; Oda, Kaya ; Tsuchiya, Masashi ; Tame, Akihiro ; Uematsu, Katsuyuki ; Isobe, Noriyuki</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4438-fa8b0406cf57fbd9a92a609b47c26211bc561e8cb96a92514fe97b4f07247d73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>3D reconstruction</topic><topic>Abundance</topic><topic>Benthos</topic><topic>Biogeochemical cycle</topic><topic>Biogeochemical cycles</topic><topic>Biogeochemistry</topic><topic>Biology</topic><topic>Chilostomella</topic><topic>Chitin</topic><topic>Chitin - ultrastructure</topic><topic>Cytoplasm</topic><topic>Foraminifera</topic><topic>Foraminifera - ultrastructure</topic><topic>Hypoxia</topic><topic>hypoxic adaptation</topic><topic>Japan</topic><topic>Lipids</topic><topic>Marine environment</topic><topic>Metabolism</topic><topic>Microscopy, Electron, Transmission</topic><topic>Original</topic><topic>Sediments</topic><topic>Structures</topic><topic>ultrastructure</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Nomaki, Hidetaka</creatorcontrib><creatorcontrib>Chen, Chong</creatorcontrib><creatorcontrib>Oda, Kaya</creatorcontrib><creatorcontrib>Tsuchiya, Masashi</creatorcontrib><creatorcontrib>Tame, Akihiro</creatorcontrib><creatorcontrib>Uematsu, Katsuyuki</creatorcontrib><creatorcontrib>Isobe, Noriyuki</creatorcontrib><collection>Wiley-Blackwell Open Access Titles</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Oceanic Abstracts</collection><collection>Technology Research Database</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>The Journal of eukaryotic microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Nomaki, Hidetaka</au><au>Chen, Chong</au><au>Oda, Kaya</au><au>Tsuchiya, Masashi</au><au>Tame, Akihiro</au><au>Uematsu, Katsuyuki</au><au>Isobe, Noriyuki</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Abundant Chitinous Structures in Chilostomella (Foraminifera, Rhizaria) and Their Potential Functions</atitle><jtitle>The Journal of eukaryotic microbiology</jtitle><addtitle>J Eukaryot Microbiol</addtitle><date>2021-01</date><risdate>2021</risdate><volume>68</volume><issue>1</issue><spage>e12828</spage><epage>n/a</epage><pages>e12828-n/a</pages><issn>1066-5234</issn><eissn>1550-7408</eissn><abstract>Benthic foraminifera, members of Rhizaria, inhabit a broad range of marine environments and are particularly common in hypoxic sediments. 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Our 3D reconstruction revealed chitinous structures in the final seven chambers. These exhibited a plate‐like morphology in the final chambers but became rolled up in earlier chambers (toward the proloculus). These chitinous, plate‐like structures may function to partition the cytoplasm in a chamber to increase the surface/volume ratio and/or act as a reactive site for some metabolic functions.</abstract><cop>United States</cop><pub>Wiley Subscription Services, Inc</pub><pmid>33128276</pmid><doi>10.1111/jeu.12828</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0001-8571-3373</orcidid><orcidid>https://orcid.org/0000-0002-5035-4021</orcidid><orcidid>https://orcid.org/0000-0002-7577-5076</orcidid><orcidid>https://orcid.org/0000-0001-8179-4030</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | 3D reconstruction Abundance Benthos Biogeochemical cycle Biogeochemical cycles Biogeochemistry Biology Chilostomella Chitin Chitin - ultrastructure Cytoplasm Foraminifera Foraminifera - ultrastructure Hypoxia hypoxic adaptation Japan Lipids Marine environment Metabolism Microscopy, Electron, Transmission Original Sediments Structures ultrastructure |
title | Abundant Chitinous Structures in Chilostomella (Foraminifera, Rhizaria) and Their Potential Functions |
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