A dyadic approach to the delineation of diagnostic entities in clinical genomics
The delineation of disease entities is complex, yet recent advances in the molecular characterization of diseases provide opportunities to designate diseases in a biologically valid manner. Here, we have formalized an approach to the delineation of Mendelian genetic disorders that encompasses two di...
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creator | Biesecker, Leslie G. Adam, Margaret P. Alkuraya, Fowzan S. Amemiya, Anne R. Bamshad, Michael J. Beck, Anita E. Bennett, James T. Bird, Lynne M. Carey, John C. Chung, Brian Clark, Robin D. Cox, Timothy C. Curry, Cynthia Dinulos, Mary Beth Palko Dobyns, William B. Giampietro, Philip F. Girisha, Katta M. Glass, Ian A. Graham, John M. Gripp, Karen W. Haldeman-Englert, Chad R. Hall, Bryan D. Innes, A. Micheil Kalish, Jennifer M. Keppler-Noreuil, Kim M. Kosaki, Kenjiro Kozel, Beth A. Mirzaa, Ghayda M. Mulvihill, John J. Nowaczyk, Malgorzata J.M. Pagon, Roberta A. Retterer, Kyle Rope, Alan F. Sanchez-Lara, Pedro A. Seaver, Laurie H. Shieh, Joseph T. Slavotinek, Anne M. Sobering, Andrew K. Stevens, Cathy A. Stevenson, David A. Tan, Tiong Yang Tan, Wen-Hann Tsai, Anne C. Weaver, David D. Williams, Marc S. Zackai, Elaine Zarate, Yuri A. |
description | The delineation of disease entities is complex, yet recent advances in the molecular characterization of diseases provide opportunities to designate diseases in a biologically valid manner. Here, we have formalized an approach to the delineation of Mendelian genetic disorders that encompasses two distinct but inter-related concepts: (1) the gene that is mutated and (2) the phenotypic descriptor, preferably a recognizably distinct phenotype. We assert that only by a combinatorial or dyadic approach taking both of these attributes into account can a unitary, distinct genetic disorder be designated. We propose that all Mendelian disorders should be designated as “GENE-related phenotype descriptor” (e.g., “CFTR-related cystic fibrosis”). This approach to delineating and naming disorders reconciles the complexity of gene-to-phenotype relationships in a simple and clear manner yet communicates the complexity and nuance of these relationships.
The delineation of disease entities is complex, yet recent advances in the molecular characterization of diseases provide opportunities to designate diseases in a biologically valid manner. Here, we have formalized an approach to the delineation of Mendelian genetic disorders that encompasses two distinct but inter-related concepts: (1) the gene that is mutated and (2) the phenotypic descriptor, preferably a recognizably distinct phenotype. We assert that only by a combinatorial or dyadic approach taking both of these attributes into account can a unitary, distinct genetic disorder be designated. We propose that all Mendelian disorders should be designated as “GENE-related phenotype descriptor” (e.g., “CFTR-related cystic fibrosis”). This approach to delineating and naming disorders reconciles the complexity of gene-to-phenotype relationships in a simple and clear manner yet communicates the complexity and nuance of these relationships. |
doi_str_mv | 10.1016/j.ajhg.2020.11.013 |
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The delineation of disease entities is complex, yet recent advances in the molecular characterization of diseases provide opportunities to designate diseases in a biologically valid manner. Here, we have formalized an approach to the delineation of Mendelian genetic disorders that encompasses two distinct but inter-related concepts: (1) the gene that is mutated and (2) the phenotypic descriptor, preferably a recognizably distinct phenotype. We assert that only by a combinatorial or dyadic approach taking both of these attributes into account can a unitary, distinct genetic disorder be designated. We propose that all Mendelian disorders should be designated as “GENE-related phenotype descriptor” (e.g., “CFTR-related cystic fibrosis”). This approach to delineating and naming disorders reconciles the complexity of gene-to-phenotype relationships in a simple and clear manner yet communicates the complexity and nuance of these relationships.</description><identifier>ISSN: 0002-9297</identifier><identifier>EISSN: 1537-6605</identifier><identifier>DOI: 10.1016/j.ajhg.2020.11.013</identifier><identifier>PMID: 33417889</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Cystic Fibrosis - diagnosis ; Cystic Fibrosis - genetics ; Cystic Fibrosis Transmembrane Conductance Regulator - genetics ; Genetic Diseases, Inborn - diagnosis ; Genetic Diseases, Inborn - genetics ; Genomics - methods ; Genotype ; Humans ; Mutation - genetics ; Phenotype</subject><ispartof>American journal of human genetics, 2021-01, Vol.108 (1), p.8-15</ispartof><rights>2020 American Society of Human Genetics</rights><rights>Copyright © 2020 American Society of Human Genetics. All rights reserved.</rights><rights>2020 American Society of Human Genetics. 2020 American Society of Human Genetics</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c521t-c0c3e258bf07979079275273b41e9e7b59d76928762489365f51a2aed7c6827a3</citedby><cites>FETCH-LOGICAL-c521t-c0c3e258bf07979079275273b41e9e7b59d76928762489365f51a2aed7c6827a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7820621/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0002929720304109$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,3537,27901,27902,53766,53768,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33417889$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Biesecker, Leslie G.</creatorcontrib><creatorcontrib>Adam, Margaret P.</creatorcontrib><creatorcontrib>Alkuraya, Fowzan S.</creatorcontrib><creatorcontrib>Amemiya, Anne R.</creatorcontrib><creatorcontrib>Bamshad, Michael J.</creatorcontrib><creatorcontrib>Beck, Anita E.</creatorcontrib><creatorcontrib>Bennett, James T.</creatorcontrib><creatorcontrib>Bird, Lynne M.</creatorcontrib><creatorcontrib>Carey, John C.</creatorcontrib><creatorcontrib>Chung, Brian</creatorcontrib><creatorcontrib>Clark, Robin D.</creatorcontrib><creatorcontrib>Cox, Timothy C.</creatorcontrib><creatorcontrib>Curry, Cynthia</creatorcontrib><creatorcontrib>Dinulos, Mary Beth Palko</creatorcontrib><creatorcontrib>Dobyns, William B.</creatorcontrib><creatorcontrib>Giampietro, Philip F.</creatorcontrib><creatorcontrib>Girisha, Katta M.</creatorcontrib><creatorcontrib>Glass, Ian A.</creatorcontrib><creatorcontrib>Graham, John M.</creatorcontrib><creatorcontrib>Gripp, Karen W.</creatorcontrib><creatorcontrib>Haldeman-Englert, Chad R.</creatorcontrib><creatorcontrib>Hall, Bryan D.</creatorcontrib><creatorcontrib>Innes, A. Micheil</creatorcontrib><creatorcontrib>Kalish, Jennifer M.</creatorcontrib><creatorcontrib>Keppler-Noreuil, Kim M.</creatorcontrib><creatorcontrib>Kosaki, Kenjiro</creatorcontrib><creatorcontrib>Kozel, Beth A.</creatorcontrib><creatorcontrib>Mirzaa, Ghayda M.</creatorcontrib><creatorcontrib>Mulvihill, John J.</creatorcontrib><creatorcontrib>Nowaczyk, Malgorzata J.M.</creatorcontrib><creatorcontrib>Pagon, Roberta A.</creatorcontrib><creatorcontrib>Retterer, Kyle</creatorcontrib><creatorcontrib>Rope, Alan F.</creatorcontrib><creatorcontrib>Sanchez-Lara, Pedro A.</creatorcontrib><creatorcontrib>Seaver, Laurie H.</creatorcontrib><creatorcontrib>Shieh, Joseph T.</creatorcontrib><creatorcontrib>Slavotinek, Anne M.</creatorcontrib><creatorcontrib>Sobering, Andrew K.</creatorcontrib><creatorcontrib>Stevens, Cathy A.</creatorcontrib><creatorcontrib>Stevenson, David A.</creatorcontrib><creatorcontrib>Tan, Tiong Yang</creatorcontrib><creatorcontrib>Tan, Wen-Hann</creatorcontrib><creatorcontrib>Tsai, Anne C.</creatorcontrib><creatorcontrib>Weaver, David D.</creatorcontrib><creatorcontrib>Williams, Marc S.</creatorcontrib><creatorcontrib>Zackai, Elaine</creatorcontrib><creatorcontrib>Zarate, Yuri A.</creatorcontrib><title>A dyadic approach to the delineation of diagnostic entities in clinical genomics</title><title>American journal of human genetics</title><addtitle>Am J Hum Genet</addtitle><description>The delineation of disease entities is complex, yet recent advances in the molecular characterization of diseases provide opportunities to designate diseases in a biologically valid manner. Here, we have formalized an approach to the delineation of Mendelian genetic disorders that encompasses two distinct but inter-related concepts: (1) the gene that is mutated and (2) the phenotypic descriptor, preferably a recognizably distinct phenotype. We assert that only by a combinatorial or dyadic approach taking both of these attributes into account can a unitary, distinct genetic disorder be designated. We propose that all Mendelian disorders should be designated as “GENE-related phenotype descriptor” (e.g., “CFTR-related cystic fibrosis”). This approach to delineating and naming disorders reconciles the complexity of gene-to-phenotype relationships in a simple and clear manner yet communicates the complexity and nuance of these relationships.
The delineation of disease entities is complex, yet recent advances in the molecular characterization of diseases provide opportunities to designate diseases in a biologically valid manner. Here, we have formalized an approach to the delineation of Mendelian genetic disorders that encompasses two distinct but inter-related concepts: (1) the gene that is mutated and (2) the phenotypic descriptor, preferably a recognizably distinct phenotype. We assert that only by a combinatorial or dyadic approach taking both of these attributes into account can a unitary, distinct genetic disorder be designated. We propose that all Mendelian disorders should be designated as “GENE-related phenotype descriptor” (e.g., “CFTR-related cystic fibrosis”). This approach to delineating and naming disorders reconciles the complexity of gene-to-phenotype relationships in a simple and clear manner yet communicates the complexity and nuance of these relationships.</description><subject>Cystic Fibrosis - diagnosis</subject><subject>Cystic Fibrosis - genetics</subject><subject>Cystic Fibrosis Transmembrane Conductance Regulator - genetics</subject><subject>Genetic Diseases, Inborn - diagnosis</subject><subject>Genetic Diseases, Inborn - genetics</subject><subject>Genomics - methods</subject><subject>Genotype</subject><subject>Humans</subject><subject>Mutation - genetics</subject><subject>Phenotype</subject><issn>0002-9297</issn><issn>1537-6605</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kU1rGzEQhkVoSZy0f6CHomMv6-hjJa0gFELIFwTSQ3sWsjRry6wlR5ID-feRcRLaSy8zMPPMO8O8CH2jZE4JlefruV2vlnNGWCvQOaH8CM2o4KqTkohPaEYIYZ1mWp2g01LWhFA6EH6MTjjvqRoGPUO_LrF_sT44bLfbnKxb4ZpwXQH2MIUItoYUcRqxD3YZU6mNhFhDDVBwiNg1KDg74SXEtAmufEGfRzsV-PqWz9Cfm-vfV3fdw-Pt_dXlQ-cEo7VzxHFgYliMRGmlW2BKMMUXPQUNaiG0V1KzQUnWD5pLMQpqmQWvnByYsvwM_TzobneLDXjXjsp2MtscNja_mGSD-bcTw8os07NRAyOS0Sbw400gp6cdlGo2oTiYJhsh7YphvZJC9r1iDWUH1OVUSobxYw0lZm-FWZu9FWZvhaHUNCva0Pe_D_wYef99Ay4OALQ3PQfIprgA0YEPGVw1PoX_6b8CiI6acQ</recordid><startdate>20210107</startdate><enddate>20210107</enddate><creator>Biesecker, Leslie G.</creator><creator>Adam, Margaret P.</creator><creator>Alkuraya, Fowzan S.</creator><creator>Amemiya, Anne R.</creator><creator>Bamshad, Michael J.</creator><creator>Beck, Anita E.</creator><creator>Bennett, James T.</creator><creator>Bird, Lynne M.</creator><creator>Carey, John C.</creator><creator>Chung, Brian</creator><creator>Clark, Robin D.</creator><creator>Cox, Timothy C.</creator><creator>Curry, Cynthia</creator><creator>Dinulos, Mary Beth Palko</creator><creator>Dobyns, William B.</creator><creator>Giampietro, Philip F.</creator><creator>Girisha, Katta M.</creator><creator>Glass, Ian A.</creator><creator>Graham, John M.</creator><creator>Gripp, Karen W.</creator><creator>Haldeman-Englert, Chad R.</creator><creator>Hall, Bryan D.</creator><creator>Innes, A. 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Micheil ; Kalish, Jennifer M. ; Keppler-Noreuil, Kim M. ; Kosaki, Kenjiro ; Kozel, Beth A. ; Mirzaa, Ghayda M. ; Mulvihill, John J. ; Nowaczyk, Malgorzata J.M. ; Pagon, Roberta A. ; Retterer, Kyle ; Rope, Alan F. ; Sanchez-Lara, Pedro A. ; Seaver, Laurie H. ; Shieh, Joseph T. ; Slavotinek, Anne M. ; Sobering, Andrew K. ; Stevens, Cathy A. ; Stevenson, David A. ; Tan, Tiong Yang ; Tan, Wen-Hann ; Tsai, Anne C. ; Weaver, David D. ; Williams, Marc S. ; Zackai, Elaine ; Zarate, Yuri A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c521t-c0c3e258bf07979079275273b41e9e7b59d76928762489365f51a2aed7c6827a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Cystic Fibrosis - diagnosis</topic><topic>Cystic Fibrosis - genetics</topic><topic>Cystic Fibrosis Transmembrane Conductance Regulator - genetics</topic><topic>Genetic Diseases, Inborn - diagnosis</topic><topic>Genetic Diseases, Inborn - genetics</topic><topic>Genomics - methods</topic><topic>Genotype</topic><topic>Humans</topic><topic>Mutation - genetics</topic><topic>Phenotype</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Biesecker, Leslie G.</creatorcontrib><creatorcontrib>Adam, Margaret P.</creatorcontrib><creatorcontrib>Alkuraya, Fowzan S.</creatorcontrib><creatorcontrib>Amemiya, Anne R.</creatorcontrib><creatorcontrib>Bamshad, Michael J.</creatorcontrib><creatorcontrib>Beck, Anita E.</creatorcontrib><creatorcontrib>Bennett, James T.</creatorcontrib><creatorcontrib>Bird, Lynne M.</creatorcontrib><creatorcontrib>Carey, John C.</creatorcontrib><creatorcontrib>Chung, Brian</creatorcontrib><creatorcontrib>Clark, Robin D.</creatorcontrib><creatorcontrib>Cox, Timothy C.</creatorcontrib><creatorcontrib>Curry, Cynthia</creatorcontrib><creatorcontrib>Dinulos, Mary Beth Palko</creatorcontrib><creatorcontrib>Dobyns, William B.</creatorcontrib><creatorcontrib>Giampietro, Philip F.</creatorcontrib><creatorcontrib>Girisha, Katta M.</creatorcontrib><creatorcontrib>Glass, Ian A.</creatorcontrib><creatorcontrib>Graham, John M.</creatorcontrib><creatorcontrib>Gripp, Karen W.</creatorcontrib><creatorcontrib>Haldeman-Englert, Chad R.</creatorcontrib><creatorcontrib>Hall, Bryan D.</creatorcontrib><creatorcontrib>Innes, A. 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Micheil</au><au>Kalish, Jennifer M.</au><au>Keppler-Noreuil, Kim M.</au><au>Kosaki, Kenjiro</au><au>Kozel, Beth A.</au><au>Mirzaa, Ghayda M.</au><au>Mulvihill, John J.</au><au>Nowaczyk, Malgorzata J.M.</au><au>Pagon, Roberta A.</au><au>Retterer, Kyle</au><au>Rope, Alan F.</au><au>Sanchez-Lara, Pedro A.</au><au>Seaver, Laurie H.</au><au>Shieh, Joseph T.</au><au>Slavotinek, Anne M.</au><au>Sobering, Andrew K.</au><au>Stevens, Cathy A.</au><au>Stevenson, David A.</au><au>Tan, Tiong Yang</au><au>Tan, Wen-Hann</au><au>Tsai, Anne C.</au><au>Weaver, David D.</au><au>Williams, Marc S.</au><au>Zackai, Elaine</au><au>Zarate, Yuri A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A dyadic approach to the delineation of diagnostic entities in clinical genomics</atitle><jtitle>American journal of human genetics</jtitle><addtitle>Am J Hum Genet</addtitle><date>2021-01-07</date><risdate>2021</risdate><volume>108</volume><issue>1</issue><spage>8</spage><epage>15</epage><pages>8-15</pages><issn>0002-9297</issn><eissn>1537-6605</eissn><abstract>The delineation of disease entities is complex, yet recent advances in the molecular characterization of diseases provide opportunities to designate diseases in a biologically valid manner. Here, we have formalized an approach to the delineation of Mendelian genetic disorders that encompasses two distinct but inter-related concepts: (1) the gene that is mutated and (2) the phenotypic descriptor, preferably a recognizably distinct phenotype. We assert that only by a combinatorial or dyadic approach taking both of these attributes into account can a unitary, distinct genetic disorder be designated. We propose that all Mendelian disorders should be designated as “GENE-related phenotype descriptor” (e.g., “CFTR-related cystic fibrosis”). This approach to delineating and naming disorders reconciles the complexity of gene-to-phenotype relationships in a simple and clear manner yet communicates the complexity and nuance of these relationships.
The delineation of disease entities is complex, yet recent advances in the molecular characterization of diseases provide opportunities to designate diseases in a biologically valid manner. Here, we have formalized an approach to the delineation of Mendelian genetic disorders that encompasses two distinct but inter-related concepts: (1) the gene that is mutated and (2) the phenotypic descriptor, preferably a recognizably distinct phenotype. We assert that only by a combinatorial or dyadic approach taking both of these attributes into account can a unitary, distinct genetic disorder be designated. We propose that all Mendelian disorders should be designated as “GENE-related phenotype descriptor” (e.g., “CFTR-related cystic fibrosis”). This approach to delineating and naming disorders reconciles the complexity of gene-to-phenotype relationships in a simple and clear manner yet communicates the complexity and nuance of these relationships.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>33417889</pmid><doi>10.1016/j.ajhg.2020.11.013</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0002-9297 |
ispartof | American journal of human genetics, 2021-01, Vol.108 (1), p.8-15 |
issn | 0002-9297 1537-6605 |
language | eng |
recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_7820621 |
source | MEDLINE; Cell Press Free Archives; Elsevier ScienceDirect Journals; EZB-FREE-00999 freely available EZB journals; PubMed Central |
subjects | Cystic Fibrosis - diagnosis Cystic Fibrosis - genetics Cystic Fibrosis Transmembrane Conductance Regulator - genetics Genetic Diseases, Inborn - diagnosis Genetic Diseases, Inborn - genetics Genomics - methods Genotype Humans Mutation - genetics Phenotype |
title | A dyadic approach to the delineation of diagnostic entities in clinical genomics |
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