The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae)
Hosta capitata (Koidz.) Nakai is an herbaceous perennial plant belonging to the Asparagaceae family and has become a popular ornamental plant. In this study, the chloroplast genome sequence of H. capitata was completed by de novo assembly with whole genome sequence data. The chloroplast genome of H....
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2018-10, Vol.3 (2), p.1052-1053 |
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| creator | Jang, Yeeun Park, Jee Young Kang, Shin-Jae Park, Hyun-Seung Shim, Hyeonah Lee, Taek Joo Kang, Jung Hwa Sung, Sang Hyun Yang, Tae-Jin |
| description | Hosta capitata (Koidz.) Nakai is an herbaceous perennial plant belonging to the Asparagaceae family and has become a popular ornamental plant. In this study, the chloroplast genome sequence of H. capitata was completed by de novo assembly with whole genome sequence data. The chloroplast genome of H. capitata is 156,416 bp in length, which is composed of a large single-copy (LSC) of 84,788 bp, a small single-copy (SSC) of 18,206 bp, and a pair of inverted repeat regions (IRa and IRb) of 26,711 bp, as four distinct parts. In total, 114 genes were identified including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. The phylogenetic analysis revealed that H. capitata has a close relationship with other Hosta species, H. minor and H. ventricosa, but is farther than the distance between them. |
| doi_str_mv | 10.1080/23802359.2018.1511858 |
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Nakai (Asparagaceae)</title><source>Taylor & Francis Open Access</source><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central</source><creator>Jang, Yeeun ; Park, Jee Young ; Kang, Shin-Jae ; Park, Hyun-Seung ; Shim, Hyeonah ; Lee, Taek Joo ; Kang, Jung Hwa ; Sung, Sang Hyun ; Yang, Tae-Jin</creator><creatorcontrib>Jang, Yeeun ; Park, Jee Young ; Kang, Shin-Jae ; Park, Hyun-Seung ; Shim, Hyeonah ; Lee, Taek Joo ; Kang, Jung Hwa ; Sung, Sang Hyun ; Yang, Tae-Jin</creatorcontrib><description>Hosta capitata (Koidz.) Nakai is an herbaceous perennial plant belonging to the Asparagaceae family and has become a popular ornamental plant. In this study, the chloroplast genome sequence of H. capitata was completed by de novo assembly with whole genome sequence data. The chloroplast genome of H. capitata is 156,416 bp in length, which is composed of a large single-copy (LSC) of 84,788 bp, a small single-copy (SSC) of 18,206 bp, and a pair of inverted repeat regions (IRa and IRb) of 26,711 bp, as four distinct parts. In total, 114 genes were identified including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. The phylogenetic analysis revealed that H. capitata has a close relationship with other Hosta species, H. minor and H. ventricosa, but is farther than the distance between them.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2018.1511858</identifier><identifier>PMID: 33474411</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>chloroplast genome ; Hosta capitata (Koidz.) Nakai ; Mitogenome Announcement ; phylogenetic analysis</subject><ispartof>Mitochondrial DNA. Part B. 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Nakai (Asparagaceae)</title><title>Mitochondrial DNA. Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>Hosta capitata (Koidz.) Nakai is an herbaceous perennial plant belonging to the Asparagaceae family and has become a popular ornamental plant. In this study, the chloroplast genome sequence of H. capitata was completed by de novo assembly with whole genome sequence data. The chloroplast genome of H. capitata is 156,416 bp in length, which is composed of a large single-copy (LSC) of 84,788 bp, a small single-copy (SSC) of 18,206 bp, and a pair of inverted repeat regions (IRa and IRb) of 26,711 bp, as four distinct parts. In total, 114 genes were identified including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. The phylogenetic analysis revealed that H. capitata has a close relationship with other Hosta species, H. minor and H. ventricosa, but is farther than the distance between them.</description><subject>chloroplast genome</subject><subject>Hosta capitata (Koidz.) Nakai</subject><subject>Mitogenome Announcement</subject><subject>phylogenetic analysis</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>DOA</sourceid><recordid>eNp9UU1v1DAUjBCIVqU_AZTj9rCLv51cEFUFtKKCS5G4WS_O865LEgfbCyq_Hi-7rdoLJ4_emzdjzVTVa0pWlDTkLeMNYVy2K0Zos6KS0kY2z6rj3Xy5Wzx_hI-q05RuCSFUca1b_bI64lxoISg9rr7fbLC2YZwHzAVshhDDPEDK9RqnMGKd8OcWJ4t1cPVlSBlqC7PPUMDic_D9n9VZ_QV-gK8X52mGCGuwCHj2qnrhYEh4enhPqm8fP9xcXC6vv366uji_XlrJRV52DdeCaKCkc43qFZPWIm_7TknierSOdICiQ91bS5VkTlnXEYe6AcsFdfykutrr9gFuzRz9CPHOBPDm3yDEtYGYvR3QcI2UUSY1U8WTuralurg5aJWQ3ELRerfXmrfdiL3FKUcYnog-3Ux-Y9bhlymxtpqzIrA4CMRQYkvZjD5ZHAaYMGyTYaLkL1qqmkKVe6qNIaWI7sGGErMr2dyXbHYlm0PJ5e7N4z8-XN1XWgjv9wQ_uRBH-B3i0JsMd6VaF2GyPhn-f4-_dvy21A</recordid><startdate>20181008</startdate><enddate>20181008</enddate><creator>Jang, Yeeun</creator><creator>Park, Jee Young</creator><creator>Kang, Shin-Jae</creator><creator>Park, Hyun-Seung</creator><creator>Shim, Hyeonah</creator><creator>Lee, Taek Joo</creator><creator>Kang, Jung Hwa</creator><creator>Sung, Sang Hyun</creator><creator>Yang, Tae-Jin</creator><general>Taylor & Francis</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20181008</creationdate><title>The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae)</title><author>Jang, Yeeun ; Park, Jee Young ; Kang, Shin-Jae ; Park, Hyun-Seung ; Shim, Hyeonah ; Lee, Taek Joo ; Kang, Jung Hwa ; Sung, Sang Hyun ; Yang, Tae-Jin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c534t-b837407a10bf86d625cce39db650fdecf0bae4be7dcc1652f6cfb0fe78ac341f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>chloroplast genome</topic><topic>Hosta capitata (Koidz.) 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Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jang, Yeeun</au><au>Park, Jee Young</au><au>Kang, Shin-Jae</au><au>Park, Hyun-Seung</au><au>Shim, Hyeonah</au><au>Lee, Taek Joo</au><au>Kang, Jung Hwa</au><au>Sung, Sang Hyun</au><au>Yang, Tae-Jin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae)</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><addtitle>Mitochondrial DNA B Resour</addtitle><date>2018-10-08</date><risdate>2018</risdate><volume>3</volume><issue>2</issue><spage>1052</spage><epage>1053</epage><pages>1052-1053</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>Hosta capitata (Koidz.) Nakai is an herbaceous perennial plant belonging to the Asparagaceae family and has become a popular ornamental plant. In this study, the chloroplast genome sequence of H. capitata was completed by de novo assembly with whole genome sequence data. The chloroplast genome of H. capitata is 156,416 bp in length, which is composed of a large single-copy (LSC) of 84,788 bp, a small single-copy (SSC) of 18,206 bp, and a pair of inverted repeat regions (IRa and IRb) of 26,711 bp, as four distinct parts. In total, 114 genes were identified including 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. The phylogenetic analysis revealed that H. capitata has a close relationship with other Hosta species, H. minor and H. ventricosa, but is farther than the distance between them.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>33474411</pmid><doi>10.1080/23802359.2018.1511858</doi><tpages>2</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | chloroplast genome Hosta capitata (Koidz.) Nakai Mitogenome Announcement phylogenetic analysis |
| title | The complete chloroplast genome sequence of Hosta capitata (Koidz.) Nakai (Asparagaceae) |
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