Molecular investigation of Tuscan sweet cherries sampled over three years: gene expression analysis coupled to metabolomics and proteomics
Sweet cherry ( Prunus avium L.) is a stone fruit widely consumed and appreciated for its organoleptic properties, as well as its nutraceutical potential. We here investigated the characteristics of six non-commercial Tuscan varieties of sweet cherry maintained at the Regional Germplasm Bank of the C...
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| Veröffentlicht in: | Horticulture research 2021-01, Vol.8 (1), p.12, Article 12 |
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| creator | Berni, Roberto Charton, Sophie Planchon, Sébastien Legay, Sylvain Romi, Marco Cantini, Claudio Cai, Giampiero Hausman, Jean-Francois Renaut, Jenny Guerriero, Gea |
| description | Sweet cherry (
Prunus avium
L.) is a stone fruit widely consumed and appreciated for its organoleptic properties, as well as its nutraceutical potential. We here investigated the characteristics of six non-commercial Tuscan varieties of sweet cherry maintained at the Regional Germplasm Bank of the CNR-IBE in Follonica (Italy) and sampled ca. 60 days post-anthesis over three consecutive years (2016-2017-2018). We adopted an approach merging genotyping and targeted gene expression profiling with metabolomics. To complement the data, a study of the soluble proteomes was also performed on two varieties showing the highest content of flavonoids. Metabolomics identified the presence of flavanols and proanthocyanidins in highest abundance in the varieties Morellona and Crognola, while gene expression revealed that some differences were present in genes involved in the phenylpropanoid pathway during the 3 years and among the varieties. Finally, proteomics on Morellona and Crognola showed variations in proteins involved in stress response, primary metabolism and cell wall expansion. To the best of our knowledge, this is the first multi-pronged study focused on Tuscan sweet cherry varieties providing insights into the differential abundance of genes, proteins and metabolites. |
| doi_str_mv | 10.1038/s41438-020-00445-3 |
| format | Article |
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Prunus avium
L.) is a stone fruit widely consumed and appreciated for its organoleptic properties, as well as its nutraceutical potential. We here investigated the characteristics of six non-commercial Tuscan varieties of sweet cherry maintained at the Regional Germplasm Bank of the CNR-IBE in Follonica (Italy) and sampled ca. 60 days post-anthesis over three consecutive years (2016-2017-2018). We adopted an approach merging genotyping and targeted gene expression profiling with metabolomics. To complement the data, a study of the soluble proteomes was also performed on two varieties showing the highest content of flavonoids. Metabolomics identified the presence of flavanols and proanthocyanidins in highest abundance in the varieties Morellona and Crognola, while gene expression revealed that some differences were present in genes involved in the phenylpropanoid pathway during the 3 years and among the varieties. Finally, proteomics on Morellona and Crognola showed variations in proteins involved in stress response, primary metabolism and cell wall expansion. To the best of our knowledge, this is the first multi-pronged study focused on Tuscan sweet cherry varieties providing insights into the differential abundance of genes, proteins and metabolites.</description><identifier>ISSN: 2662-6810</identifier><identifier>ISSN: 2052-7276</identifier><identifier>EISSN: 2052-7276</identifier><identifier>DOI: 10.1038/s41438-020-00445-3</identifier><identifier>PMID: 33384418</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/1647/2017 ; 631/1647/320 ; 631/337/475 ; 631/449/2667 ; Agriculture ; Agriculture & agronomie ; Agriculture & agronomy ; Biochemistry ; Biochemistry, biophysics & molecular biology ; Biochimie, biophysique & biologie moléculaire ; Biomedical and Life Sciences ; Biotechnology ; Cell walls ; Cellular stress response ; Cherries ; Ecology ; Flavanols ; Flavonoids ; Fruits ; Functional foods & nutraceuticals ; Gene expression ; Genes ; Genetics ; Genotyping ; Germplasm ; Horticulture ; Life Sciences ; Metabolism ; Metabolites ; Metabolomics ; Organoleptic properties ; Plant Breeding/Biotechnology ; Plant Genetics and Genomics ; Plant Science ; Plant Sciences ; Proanthocyanidins ; Proteins ; Proteomics ; Prunus avium ; Sciences du vivant</subject><ispartof>Horticulture research, 2021-01, Vol.8 (1), p.12, Article 12</ispartof><rights>The Author(s) 2020</rights><rights>The Author(s) 2020. This work is published under https://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c584t-87d25fc25e7f44cd9b50bb9bf80646dff2dcf7335406b17989e5097a5bc62783</citedby><cites>FETCH-LOGICAL-c584t-87d25fc25e7f44cd9b50bb9bf80646dff2dcf7335406b17989e5097a5bc62783</cites><orcidid>0000-0002-0455-0574 ; 0000-0002-7941-4657 ; 0000-0001-6586-6997</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7775447/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7775447/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,41096,42165,51551,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33384418$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.science/hal-04369379$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Berni, Roberto</creatorcontrib><creatorcontrib>Charton, Sophie</creatorcontrib><creatorcontrib>Planchon, Sébastien</creatorcontrib><creatorcontrib>Legay, Sylvain</creatorcontrib><creatorcontrib>Romi, Marco</creatorcontrib><creatorcontrib>Cantini, Claudio</creatorcontrib><creatorcontrib>Cai, Giampiero</creatorcontrib><creatorcontrib>Hausman, Jean-Francois</creatorcontrib><creatorcontrib>Renaut, Jenny</creatorcontrib><creatorcontrib>Guerriero, Gea</creatorcontrib><title>Molecular investigation of Tuscan sweet cherries sampled over three years: gene expression analysis coupled to metabolomics and proteomics</title><title>Horticulture research</title><addtitle>Hortic Res</addtitle><addtitle>Hortic Res</addtitle><description>Sweet cherry (
Prunus avium
L.) is a stone fruit widely consumed and appreciated for its organoleptic properties, as well as its nutraceutical potential. We here investigated the characteristics of six non-commercial Tuscan varieties of sweet cherry maintained at the Regional Germplasm Bank of the CNR-IBE in Follonica (Italy) and sampled ca. 60 days post-anthesis over three consecutive years (2016-2017-2018). We adopted an approach merging genotyping and targeted gene expression profiling with metabolomics. To complement the data, a study of the soluble proteomes was also performed on two varieties showing the highest content of flavonoids. Metabolomics identified the presence of flavanols and proanthocyanidins in highest abundance in the varieties Morellona and Crognola, while gene expression revealed that some differences were present in genes involved in the phenylpropanoid pathway during the 3 years and among the varieties. Finally, proteomics on Morellona and Crognola showed variations in proteins involved in stress response, primary metabolism and cell wall expansion. To the best of our knowledge, this is the first multi-pronged study focused on Tuscan sweet cherry varieties providing insights into the differential abundance of genes, proteins and metabolites.</description><subject>631/1647/2017</subject><subject>631/1647/320</subject><subject>631/337/475</subject><subject>631/449/2667</subject><subject>Agriculture</subject><subject>Agriculture & agronomie</subject><subject>Agriculture & agronomy</subject><subject>Biochemistry</subject><subject>Biochemistry, biophysics & molecular biology</subject><subject>Biochimie, biophysique & biologie moléculaire</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Cell walls</subject><subject>Cellular stress response</subject><subject>Cherries</subject><subject>Ecology</subject><subject>Flavanols</subject><subject>Flavonoids</subject><subject>Fruits</subject><subject>Functional foods & nutraceuticals</subject><subject>Gene expression</subject><subject>Genes</subject><subject>Genetics</subject><subject>Genotyping</subject><subject>Germplasm</subject><subject>Horticulture</subject><subject>Life Sciences</subject><subject>Metabolism</subject><subject>Metabolites</subject><subject>Metabolomics</subject><subject>Organoleptic properties</subject><subject>Plant Breeding/Biotechnology</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Science</subject><subject>Plant Sciences</subject><subject>Proanthocyanidins</subject><subject>Proteins</subject><subject>Proteomics</subject><subject>Prunus avium</subject><subject>Sciences du 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investigation of Tuscan sweet cherries sampled over three years: gene expression analysis coupled to metabolomics and proteomics</title><author>Berni, Roberto ; Charton, Sophie ; Planchon, Sébastien ; Legay, Sylvain ; Romi, Marco ; Cantini, Claudio ; Cai, Giampiero ; Hausman, Jean-Francois ; Renaut, Jenny ; Guerriero, Gea</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c584t-87d25fc25e7f44cd9b50bb9bf80646dff2dcf7335406b17989e5097a5bc62783</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>631/1647/2017</topic><topic>631/1647/320</topic><topic>631/337/475</topic><topic>631/449/2667</topic><topic>Agriculture</topic><topic>Agriculture & agronomie</topic><topic>Agriculture & agronomy</topic><topic>Biochemistry</topic><topic>Biochemistry, biophysics & molecular biology</topic><topic>Biochimie, biophysique & biologie moléculaire</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Cell walls</topic><topic>Cellular stress response</topic><topic>Cherries</topic><topic>Ecology</topic><topic>Flavanols</topic><topic>Flavonoids</topic><topic>Fruits</topic><topic>Functional foods & nutraceuticals</topic><topic>Gene expression</topic><topic>Genes</topic><topic>Genetics</topic><topic>Genotyping</topic><topic>Germplasm</topic><topic>Horticulture</topic><topic>Life Sciences</topic><topic>Metabolism</topic><topic>Metabolites</topic><topic>Metabolomics</topic><topic>Organoleptic properties</topic><topic>Plant Breeding/Biotechnology</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Science</topic><topic>Plant Sciences</topic><topic>Proanthocyanidins</topic><topic>Proteins</topic><topic>Proteomics</topic><topic>Prunus avium</topic><topic>Sciences du vivant</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Berni, Roberto</creatorcontrib><creatorcontrib>Charton, Sophie</creatorcontrib><creatorcontrib>Planchon, Sébastien</creatorcontrib><creatorcontrib>Legay, Sylvain</creatorcontrib><creatorcontrib>Romi, Marco</creatorcontrib><creatorcontrib>Cantini, Claudio</creatorcontrib><creatorcontrib>Cai, Giampiero</creatorcontrib><creatorcontrib>Hausman, Jean-Francois</creatorcontrib><creatorcontrib>Renaut, Jenny</creatorcontrib><creatorcontrib>Guerriero, Gea</creatorcontrib><collection>Springer Nature OA/Free Journals</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni 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Giampiero</au><au>Hausman, Jean-Francois</au><au>Renaut, Jenny</au><au>Guerriero, Gea</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular investigation of Tuscan sweet cherries sampled over three years: gene expression analysis coupled to metabolomics and proteomics</atitle><jtitle>Horticulture research</jtitle><stitle>Hortic Res</stitle><addtitle>Hortic Res</addtitle><date>2021-01-01</date><risdate>2021</risdate><volume>8</volume><issue>1</issue><spage>12</spage><pages>12-</pages><artnum>12</artnum><issn>2662-6810</issn><issn>2052-7276</issn><eissn>2052-7276</eissn><abstract>Sweet cherry (
Prunus avium
L.) is a stone fruit widely consumed and appreciated for its organoleptic properties, as well as its nutraceutical potential. We here investigated the characteristics of six non-commercial Tuscan varieties of sweet cherry maintained at the Regional Germplasm Bank of the CNR-IBE in Follonica (Italy) and sampled ca. 60 days post-anthesis over three consecutive years (2016-2017-2018). We adopted an approach merging genotyping and targeted gene expression profiling with metabolomics. To complement the data, a study of the soluble proteomes was also performed on two varieties showing the highest content of flavonoids. Metabolomics identified the presence of flavanols and proanthocyanidins in highest abundance in the varieties Morellona and Crognola, while gene expression revealed that some differences were present in genes involved in the phenylpropanoid pathway during the 3 years and among the varieties. Finally, proteomics on Morellona and Crognola showed variations in proteins involved in stress response, primary metabolism and cell wall expansion. To the best of our knowledge, this is the first multi-pronged study focused on Tuscan sweet cherry varieties providing insights into the differential abundance of genes, proteins and metabolites.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>33384418</pmid><doi>10.1038/s41438-020-00445-3</doi><orcidid>https://orcid.org/0000-0002-0455-0574</orcidid><orcidid>https://orcid.org/0000-0002-7941-4657</orcidid><orcidid>https://orcid.org/0000-0001-6586-6997</orcidid><oa>free_for_read</oa></addata></record> |
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| source | Nature Open Access; Oxford Journals Open Access Collection; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Springer Nature OA/Free Journals |
| subjects | 631/1647/2017 631/1647/320 631/337/475 631/449/2667 Agriculture Agriculture & agronomie Agriculture & agronomy Biochemistry Biochemistry, biophysics & molecular biology Biochimie, biophysique & biologie moléculaire Biomedical and Life Sciences Biotechnology Cell walls Cellular stress response Cherries Ecology Flavanols Flavonoids Fruits Functional foods & nutraceuticals Gene expression Genes Genetics Genotyping Germplasm Horticulture Life Sciences Metabolism Metabolites Metabolomics Organoleptic properties Plant Breeding/Biotechnology Plant Genetics and Genomics Plant Science Plant Sciences Proanthocyanidins Proteins Proteomics Prunus avium Sciences du vivant |
| title | Molecular investigation of Tuscan sweet cherries sampled over three years: gene expression analysis coupled to metabolomics and proteomics |
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