Detection and genotyping of Porcine circovirus 2 (PCV‐2) and detection of Porcine circovirus 3 (PCV‐3) in sera from fattening pigs of different European countries
PCV‐2 is considered one of the most economically important viral agents in swine worldwide. Recently, PCV‐3 has been found in pigs affected by different disorders and in healthy animals. The objective of this epidemiological work was to describe the frequency of detection of PCV‐2 and PCV‐3 in pig f...
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description | PCV‐2 is considered one of the most economically important viral agents in swine worldwide. Recently, PCV‐3 has been found in pigs affected by different disorders and in healthy animals. The objective of this epidemiological work was to describe the frequency of detection of PCV‐2 and PCV‐3 in pig farms of 9 European countries. Moreover, a second aim was to assess the most frequent PCV‐2 genotypes found in the studied farms. Sera from 5 to 10 pigs per farm were collected from 2 to 11 farms per studied country. A total of 624 sera of fattening pigs (10–25 week old) from 64 farms from Spain (n = 11), Belgium (n = 10), France (n = 8), Germany (n = 8), Italy (n = 7), Denmark (n = 8), the Netherlands (n = 5), Ireland (n = 5) and Sweden (n = 2) were analysed by conventional PCR. In addition, one or two PCV‐2‐positive samples per farm were genotyped by sequencing the ORF2 gene. PCV‐3 PCR‐positive samples with relatively low Ct values were also sequenced and phylogenetically analysed. PCV‐2 DNA was detected in pig sera from all European tested countries, but Sweden. A total of 132 out of 624 (21%) sera were positive for PCV‐2 PCR, corresponding to 30 out of the 64 (47%) tested farms. PCV‐3 DNA was detected in 52 out of 624 (8%) sera, corresponding also to 30 out of the 64 (47%) studied farms from all tested countries. A total of 48 PCV‐2 PCR‐positive samples were successfully sequenced and genotyped, being PCV‐2d the most frequently genotype found (n = 28), followed by PCV‐2b (n = 11) and PCV‐2a (n = 9). These results pointed out PCV‐2d as the most prevalent genotype currently in Europe. The PCV‐3 phylogenetic analysis showed high identity (>98%) among sequences from all the analysed countries. The relatively low co‐infection (3%), likely suggest an independent circulation patterns of PCV‐2 and PCV‐3. |
doi_str_mv | 10.1111/tbed.13596 |
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Recently, PCV‐3 has been found in pigs affected by different disorders and in healthy animals. The objective of this epidemiological work was to describe the frequency of detection of PCV‐2 and PCV‐3 in pig farms of 9 European countries. Moreover, a second aim was to assess the most frequent PCV‐2 genotypes found in the studied farms. Sera from 5 to 10 pigs per farm were collected from 2 to 11 farms per studied country. A total of 624 sera of fattening pigs (10–25 week old) from 64 farms from Spain (n = 11), Belgium (n = 10), France (n = 8), Germany (n = 8), Italy (n = 7), Denmark (n = 8), the Netherlands (n = 5), Ireland (n = 5) and Sweden (n = 2) were analysed by conventional PCR. In addition, one or two PCV‐2‐positive samples per farm were genotyped by sequencing the ORF2 gene. PCV‐3 PCR‐positive samples with relatively low Ct values were also sequenced and phylogenetically analysed. PCV‐2 DNA was detected in pig sera from all European tested countries, but Sweden. A total of 132 out of 624 (21%) sera were positive for PCV‐2 PCR, corresponding to 30 out of the 64 (47%) tested farms. PCV‐3 DNA was detected in 52 out of 624 (8%) sera, corresponding also to 30 out of the 64 (47%) studied farms from all tested countries. A total of 48 PCV‐2 PCR‐positive samples were successfully sequenced and genotyped, being PCV‐2d the most frequently genotype found (n = 28), followed by PCV‐2b (n = 11) and PCV‐2a (n = 9). These results pointed out PCV‐2d as the most prevalent genotype currently in Europe. The PCV‐3 phylogenetic analysis showed high identity (>98%) among sequences from all the analysed countries. The relatively low co‐infection (3%), likely suggest an independent circulation patterns of PCV‐2 and PCV‐3.</description><identifier>ISSN: 1865-1674</identifier><identifier>EISSN: 1865-1682</identifier><identifier>DOI: 10.1111/tbed.13596</identifier><identifier>PMID: 32356364</identifier><language>eng</language><publisher>Germany: Hindawi Limited</publisher><subject>Animals ; Circoviridae Infections - epidemiology ; Circoviridae Infections - veterinary ; Circoviridae Infections - virology ; Circovirus - genetics ; Circovirus - isolation & purification ; Deoxyribonucleic acid ; DNA ; Epidemiology ; Europe - epidemiology ; Farms ; Gene sequencing ; Genotype ; Genotypes ; Genotyping ; Genotyping Techniques - veterinary ; Hogs ; Livestock ; Nucleotide sequence ; Orf2 gene ; Original ; phylogenetic analysis ; Phylogeny ; Polymerase chain reaction ; Polymerase Chain Reaction - veterinary ; porcine circovirus type 2 (PCV‐2) ; porcine circovirus type 3 (PCV‐3) ; Sequence Analysis, DNA ; Swine ; Swine Diseases - epidemiology ; Swine Diseases - virology</subject><ispartof>Transboundary and emerging diseases, 2020-11, Vol.67 (6), p.2521-2531</ispartof><rights>2020 The Authors. Transboundary and Emerging Diseases published by Blackwell Verlag GmbH</rights><rights>2020 The Authors. Transboundary and Emerging Diseases published by Blackwell Verlag GmbH.</rights><rights>2020. This article is published under http://creativecommons.org/licenses/by-nc/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4486-6be6f88a2ac43eed00d7f7aa4ea1fbc43b270a67d30dfe22dec302d7489801673</citedby><cites>FETCH-LOGICAL-c4486-6be6f88a2ac43eed00d7f7aa4ea1fbc43b270a67d30dfe22dec302d7489801673</cites><orcidid>0000-0002-1539-7261</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Ftbed.13596$$EPDF$$P50$$Gwiley$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Ftbed.13596$$EHTML$$P50$$Gwiley$$Hfree_for_read</linktohtml><link.rule.ids>230,314,780,784,885,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32356364$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Saporiti, Viviane</creatorcontrib><creatorcontrib>Huerta, Eva</creatorcontrib><creatorcontrib>Correa‐Fiz, Florencia</creatorcontrib><creatorcontrib>Grosse Liesner, Bernd</creatorcontrib><creatorcontrib>Duran, Oliver</creatorcontrib><creatorcontrib>Segalés, Joaquim</creatorcontrib><creatorcontrib>Sibila, Marina</creatorcontrib><title>Detection and genotyping of Porcine circovirus 2 (PCV‐2) and detection of Porcine circovirus 3 (PCV‐3) in sera from fattening pigs of different European countries</title><title>Transboundary and emerging diseases</title><addtitle>Transbound Emerg Dis</addtitle><description>PCV‐2 is considered one of the most economically important viral agents in swine worldwide. Recently, PCV‐3 has been found in pigs affected by different disorders and in healthy animals. The objective of this epidemiological work was to describe the frequency of detection of PCV‐2 and PCV‐3 in pig farms of 9 European countries. Moreover, a second aim was to assess the most frequent PCV‐2 genotypes found in the studied farms. Sera from 5 to 10 pigs per farm were collected from 2 to 11 farms per studied country. A total of 624 sera of fattening pigs (10–25 week old) from 64 farms from Spain (n = 11), Belgium (n = 10), France (n = 8), Germany (n = 8), Italy (n = 7), Denmark (n = 8), the Netherlands (n = 5), Ireland (n = 5) and Sweden (n = 2) were analysed by conventional PCR. In addition, one or two PCV‐2‐positive samples per farm were genotyped by sequencing the ORF2 gene. PCV‐3 PCR‐positive samples with relatively low Ct values were also sequenced and phylogenetically analysed. PCV‐2 DNA was detected in pig sera from all European tested countries, but Sweden. A total of 132 out of 624 (21%) sera were positive for PCV‐2 PCR, corresponding to 30 out of the 64 (47%) tested farms. PCV‐3 DNA was detected in 52 out of 624 (8%) sera, corresponding also to 30 out of the 64 (47%) studied farms from all tested countries. A total of 48 PCV‐2 PCR‐positive samples were successfully sequenced and genotyped, being PCV‐2d the most frequently genotype found (n = 28), followed by PCV‐2b (n = 11) and PCV‐2a (n = 9). These results pointed out PCV‐2d as the most prevalent genotype currently in Europe. The PCV‐3 phylogenetic analysis showed high identity (>98%) among sequences from all the analysed countries. The relatively low co‐infection (3%), likely suggest an independent circulation patterns of PCV‐2 and PCV‐3.</description><subject>Animals</subject><subject>Circoviridae Infections - epidemiology</subject><subject>Circoviridae Infections - veterinary</subject><subject>Circoviridae Infections - virology</subject><subject>Circovirus - genetics</subject><subject>Circovirus - isolation & purification</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Epidemiology</subject><subject>Europe - epidemiology</subject><subject>Farms</subject><subject>Gene sequencing</subject><subject>Genotype</subject><subject>Genotypes</subject><subject>Genotyping</subject><subject>Genotyping Techniques - veterinary</subject><subject>Hogs</subject><subject>Livestock</subject><subject>Nucleotide sequence</subject><subject>Orf2 gene</subject><subject>Original</subject><subject>phylogenetic analysis</subject><subject>Phylogeny</subject><subject>Polymerase chain reaction</subject><subject>Polymerase Chain Reaction - veterinary</subject><subject>porcine circovirus type 2 (PCV‐2)</subject><subject>porcine circovirus type 3 (PCV‐3)</subject><subject>Sequence Analysis, DNA</subject><subject>Swine</subject><subject>Swine Diseases - epidemiology</subject><subject>Swine Diseases - virology</subject><issn>1865-1674</issn><issn>1865-1682</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>WIN</sourceid><sourceid>EIF</sourceid><recordid>eNp9kU1u1DAcxS1ERT9gwwGQJTYt0hR_xUk2SDCdFqRKdFHYWo799-AqY6d2UjS7HoFTcDBO0qTTjgAhvLFl_97zsx9CLyk5puN42zdgjykvavkE7dFKFjMqK_Z0uy7FLtrP-YoQSWpZPEO7nPFCcin20M8T6MH0Pgasg8VLCLFfdz4scXT4IibjA2Djk4k3Pg0ZM3x4Mf_66_YHO7oX2K383zx_5PkR9gFnSBq7FFfY6b6HMF3U-WWe1NY7BwlCjxdDih3ogE0cQp885Odox-k2w4uH-QB9OV1czj_Ozj-ffZq_P58ZISo5kw1IV1WaaSM4gCXElq7UWoCmrhn3GlYSLUvLiXXAmAXDCbOlqOqKjB_FD9C7jW83NCuwZkyTdKu65Fc6rVXUXv15Evw3tYw3qiwLQQsxGhw-GKR4PUDu1cpnA22rA8QhK8brUkpZ1GxEX_-FXsUhhfF5iglZiZpwOiV6s6FMijkncNswlKipfjXVr-7rH-FXv8ffoo99jwDdAN99C-v_WKnLD4uTjekdnYS-wA</recordid><startdate>202011</startdate><enddate>202011</enddate><creator>Saporiti, Viviane</creator><creator>Huerta, Eva</creator><creator>Correa‐Fiz, Florencia</creator><creator>Grosse Liesner, Bernd</creator><creator>Duran, Oliver</creator><creator>Segalés, Joaquim</creator><creator>Sibila, Marina</creator><general>Hindawi Limited</general><general>John Wiley and Sons Inc</general><scope>24P</scope><scope>WIN</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-1539-7261</orcidid></search><sort><creationdate>202011</creationdate><title>Detection and genotyping of Porcine circovirus 2 (PCV‐2) and detection of Porcine circovirus 3 (PCV‐3) in sera from fattening pigs of different European countries</title><author>Saporiti, Viviane ; Huerta, Eva ; Correa‐Fiz, Florencia ; Grosse Liesner, Bernd ; Duran, Oliver ; Segalés, Joaquim ; Sibila, Marina</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4486-6be6f88a2ac43eed00d7f7aa4ea1fbc43b270a67d30dfe22dec302d7489801673</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Animals</topic><topic>Circoviridae Infections - epidemiology</topic><topic>Circoviridae Infections - veterinary</topic><topic>Circoviridae Infections - virology</topic><topic>Circovirus - genetics</topic><topic>Circovirus - isolation & purification</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Epidemiology</topic><topic>Europe - epidemiology</topic><topic>Farms</topic><topic>Gene sequencing</topic><topic>Genotype</topic><topic>Genotypes</topic><topic>Genotyping</topic><topic>Genotyping Techniques - veterinary</topic><topic>Hogs</topic><topic>Livestock</topic><topic>Nucleotide sequence</topic><topic>Orf2 gene</topic><topic>Original</topic><topic>phylogenetic analysis</topic><topic>Phylogeny</topic><topic>Polymerase chain reaction</topic><topic>Polymerase Chain Reaction - veterinary</topic><topic>porcine circovirus type 2 (PCV‐2)</topic><topic>porcine circovirus type 3 (PCV‐3)</topic><topic>Sequence Analysis, DNA</topic><topic>Swine</topic><topic>Swine Diseases - epidemiology</topic><topic>Swine Diseases - virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Saporiti, Viviane</creatorcontrib><creatorcontrib>Huerta, Eva</creatorcontrib><creatorcontrib>Correa‐Fiz, Florencia</creatorcontrib><creatorcontrib>Grosse Liesner, Bernd</creatorcontrib><creatorcontrib>Duran, Oliver</creatorcontrib><creatorcontrib>Segalés, Joaquim</creatorcontrib><creatorcontrib>Sibila, Marina</creatorcontrib><collection>Wiley Online Library (Open Access Collection)</collection><collection>Wiley Online Library Free Content</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Transboundary and emerging diseases</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Saporiti, Viviane</au><au>Huerta, Eva</au><au>Correa‐Fiz, Florencia</au><au>Grosse Liesner, Bernd</au><au>Duran, Oliver</au><au>Segalés, Joaquim</au><au>Sibila, Marina</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Detection and genotyping of Porcine circovirus 2 (PCV‐2) and detection of Porcine circovirus 3 (PCV‐3) in sera from fattening pigs of different European countries</atitle><jtitle>Transboundary and emerging diseases</jtitle><addtitle>Transbound Emerg Dis</addtitle><date>2020-11</date><risdate>2020</risdate><volume>67</volume><issue>6</issue><spage>2521</spage><epage>2531</epage><pages>2521-2531</pages><issn>1865-1674</issn><eissn>1865-1682</eissn><abstract>PCV‐2 is considered one of the most economically important viral agents in swine worldwide. Recently, PCV‐3 has been found in pigs affected by different disorders and in healthy animals. The objective of this epidemiological work was to describe the frequency of detection of PCV‐2 and PCV‐3 in pig farms of 9 European countries. Moreover, a second aim was to assess the most frequent PCV‐2 genotypes found in the studied farms. Sera from 5 to 10 pigs per farm were collected from 2 to 11 farms per studied country. A total of 624 sera of fattening pigs (10–25 week old) from 64 farms from Spain (n = 11), Belgium (n = 10), France (n = 8), Germany (n = 8), Italy (n = 7), Denmark (n = 8), the Netherlands (n = 5), Ireland (n = 5) and Sweden (n = 2) were analysed by conventional PCR. In addition, one or two PCV‐2‐positive samples per farm were genotyped by sequencing the ORF2 gene. PCV‐3 PCR‐positive samples with relatively low Ct values were also sequenced and phylogenetically analysed. PCV‐2 DNA was detected in pig sera from all European tested countries, but Sweden. A total of 132 out of 624 (21%) sera were positive for PCV‐2 PCR, corresponding to 30 out of the 64 (47%) tested farms. PCV‐3 DNA was detected in 52 out of 624 (8%) sera, corresponding also to 30 out of the 64 (47%) studied farms from all tested countries. A total of 48 PCV‐2 PCR‐positive samples were successfully sequenced and genotyped, being PCV‐2d the most frequently genotype found (n = 28), followed by PCV‐2b (n = 11) and PCV‐2a (n = 9). These results pointed out PCV‐2d as the most prevalent genotype currently in Europe. The PCV‐3 phylogenetic analysis showed high identity (>98%) among sequences from all the analysed countries. The relatively low co‐infection (3%), likely suggest an independent circulation patterns of PCV‐2 and PCV‐3.</abstract><cop>Germany</cop><pub>Hindawi Limited</pub><pmid>32356364</pmid><doi>10.1111/tbed.13596</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0002-1539-7261</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Animals Circoviridae Infections - epidemiology Circoviridae Infections - veterinary Circoviridae Infections - virology Circovirus - genetics Circovirus - isolation & purification Deoxyribonucleic acid DNA Epidemiology Europe - epidemiology Farms Gene sequencing Genotype Genotypes Genotyping Genotyping Techniques - veterinary Hogs Livestock Nucleotide sequence Orf2 gene Original phylogenetic analysis Phylogeny Polymerase chain reaction Polymerase Chain Reaction - veterinary porcine circovirus type 2 (PCV‐2) porcine circovirus type 3 (PCV‐3) Sequence Analysis, DNA Swine Swine Diseases - epidemiology Swine Diseases - virology |
title | Detection and genotyping of Porcine circovirus 2 (PCV‐2) and detection of Porcine circovirus 3 (PCV‐3) in sera from fattening pigs of different European countries |
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