Identification and Characterization of PLATZ Transcription Factors in Wheat
The PLATZ (plant AT-rich protein and zinc-binding protein) transcription factor family is a class of plant-specific zinc-dependent DNA-binding proteins. PLATZ has essential roles in seed endosperm development, as well as promoting cell proliferation duration in the earlier stages of the crops. In th...
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| Veröffentlicht in: | International journal of molecular sciences 2020-11, Vol.21 (23), p.8934 |
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| creator | Fu, Yuxin Cheng, Mengping Li, Maolian Guo, Xiaojiang Wu, Yongrui Wang, Jirui |
| description | The PLATZ (plant AT-rich protein and zinc-binding protein) transcription factor family is a class of plant-specific zinc-dependent DNA-binding proteins. PLATZ has essential roles in seed endosperm development, as well as promoting cell proliferation duration in the earlier stages of the crops. In the present study, 62
genes were identified from the wheat genome, and they were unequally distributed on 15 chromosomes. According to the phylogenetic analysis, 62
genes were classified into six groups, including two groups that were unique in wheat. Members in the same groups shared similar exon-intron structures. The polyploidization, together with genome duplication of wheat, plays a crucial role in the expansion of the
family. Transcriptome data indicated a distinct divergence expression pattern of
genes that could be clustered into four modules. The
in Module b possessed a seed-specific expression pattern and displayed obvious high expression in the earlier development stage of seeds. Subcellular localization data of
suggesting that they likely perform a function as a conventional transcription factor. This study provides insight into understanding the structure divergence, evolutionary features, expression profiles, and potential function of PLATZ in wheat. |
| doi_str_mv | 10.3390/ijms21238934 |
| format | Article |
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genes were identified from the wheat genome, and they were unequally distributed on 15 chromosomes. According to the phylogenetic analysis, 62
genes were classified into six groups, including two groups that were unique in wheat. Members in the same groups shared similar exon-intron structures. The polyploidization, together with genome duplication of wheat, plays a crucial role in the expansion of the
family. Transcriptome data indicated a distinct divergence expression pattern of
genes that could be clustered into four modules. The
in Module b possessed a seed-specific expression pattern and displayed obvious high expression in the earlier development stage of seeds. Subcellular localization data of
suggesting that they likely perform a function as a conventional transcription factor. This study provides insight into understanding the structure divergence, evolutionary features, expression profiles, and potential function of PLATZ in wheat.</description><identifier>ISSN: 1422-0067</identifier><identifier>ISSN: 1661-6596</identifier><identifier>EISSN: 1422-0067</identifier><identifier>DOI: 10.3390/ijms21238934</identifier><identifier>PMID: 33255649</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Amino acids ; Cell cycle ; Cell division ; Cell growth ; Cell proliferation ; Chromosomes ; Chromosomes, Plant - genetics ; Deoxyribonucleic acid ; Divergence ; DNA ; DNA-binding protein ; Endosperm ; Evolution ; Evolution, Molecular ; Gene expression ; Gene Expression Regulation, Plant - genetics ; Genes ; Genome, Plant ; Genomes ; Genomics ; Goat grass ; Identification ; Localization ; Multigene Family - genetics ; Phylogenetics ; Phylogeny ; Plant Proteins - chemistry ; Plant Proteins - genetics ; Plant Proteins - isolation & purification ; Polyploidy ; Proteins ; RNA polymerase ; Seeds ; Senescence ; Transcription factors ; Transcription Factors - genetics ; Transcription Factors - isolation & purification ; Trees ; Triticum - chemistry ; Triticum - genetics ; Wheat ; Zinc plating ; Zinc-binding protein</subject><ispartof>International journal of molecular sciences, 2020-11, Vol.21 (23), p.8934</ispartof><rights>2020. This work is licensed under http://creativecommons.org/licenses/by/3.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2020 by the authors. 2020</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c412t-49f47d7ae012c83ee47f30b194979758ae0f5955751c7bbe2da3e3590804cc603</citedby><cites>FETCH-LOGICAL-c412t-49f47d7ae012c83ee47f30b194979758ae0f5955751c7bbe2da3e3590804cc603</cites><orcidid>0000-0002-1396-0647 ; 0000-0002-5019-6844</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7728089/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7728089/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27903,27904,53770,53772</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33255649$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Fu, Yuxin</creatorcontrib><creatorcontrib>Cheng, Mengping</creatorcontrib><creatorcontrib>Li, Maolian</creatorcontrib><creatorcontrib>Guo, Xiaojiang</creatorcontrib><creatorcontrib>Wu, Yongrui</creatorcontrib><creatorcontrib>Wang, Jirui</creatorcontrib><title>Identification and Characterization of PLATZ Transcription Factors in Wheat</title><title>International journal of molecular sciences</title><addtitle>Int J Mol Sci</addtitle><description>The PLATZ (plant AT-rich protein and zinc-binding protein) transcription factor family is a class of plant-specific zinc-dependent DNA-binding proteins. PLATZ has essential roles in seed endosperm development, as well as promoting cell proliferation duration in the earlier stages of the crops. In the present study, 62
genes were identified from the wheat genome, and they were unequally distributed on 15 chromosomes. According to the phylogenetic analysis, 62
genes were classified into six groups, including two groups that were unique in wheat. Members in the same groups shared similar exon-intron structures. The polyploidization, together with genome duplication of wheat, plays a crucial role in the expansion of the
family. Transcriptome data indicated a distinct divergence expression pattern of
genes that could be clustered into four modules. The
in Module b possessed a seed-specific expression pattern and displayed obvious high expression in the earlier development stage of seeds. Subcellular localization data of
suggesting that they likely perform a function as a conventional transcription factor. This study provides insight into understanding the structure divergence, evolutionary features, expression profiles, and potential function of PLATZ in wheat.</description><subject>Amino acids</subject><subject>Cell cycle</subject><subject>Cell division</subject><subject>Cell growth</subject><subject>Cell proliferation</subject><subject>Chromosomes</subject><subject>Chromosomes, Plant - genetics</subject><subject>Deoxyribonucleic acid</subject><subject>Divergence</subject><subject>DNA</subject><subject>DNA-binding protein</subject><subject>Endosperm</subject><subject>Evolution</subject><subject>Evolution, Molecular</subject><subject>Gene expression</subject><subject>Gene Expression Regulation, Plant - genetics</subject><subject>Genes</subject><subject>Genome, Plant</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Goat grass</subject><subject>Identification</subject><subject>Localization</subject><subject>Multigene Family - genetics</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant Proteins - chemistry</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - isolation & purification</subject><subject>Polyploidy</subject><subject>Proteins</subject><subject>RNA polymerase</subject><subject>Seeds</subject><subject>Senescence</subject><subject>Transcription factors</subject><subject>Transcription Factors - genetics</subject><subject>Transcription Factors - isolation & purification</subject><subject>Trees</subject><subject>Triticum - chemistry</subject><subject>Triticum - genetics</subject><subject>Wheat</subject><subject>Zinc plating</subject><subject>Zinc-binding protein</subject><issn>1422-0067</issn><issn>1661-6596</issn><issn>1422-0067</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNpdkU1LAzEQhoMotlZvnmXBiwdX87nZXIRSrBYLeqgIXkKazdqU7aYmu4L-elNbS_U0w8zDzLzzAnCK4BUhAl7b-SJghEkuCN0DXUQxTiHM-P5O3gFHIcwhxAQzcQg6JEaWUdEFD6PC1I0trVaNdXWi6iIZzJRXujHefq2Lrkyexv3JazLxqg7a2-VPeRgh50Ni6-RlZlRzDA5KVQVzsok98Dy8nQzu0_Hj3WjQH6eaItykVJSUF1wZiLDOiTGUlwROkaCCC87y2CiZYIwzpPl0anChiCFMwBxSrTNIeuBmPXfZThem0FGAV5VcertQ_lM6ZeXfTm1n8s19SM5xDuOfeuBiM8C799aERi5s0KaqVG1cGySmWVyTCUQjev4PnbvW11HeiopHIpizSF2uKe1dCN6U22MQlCuX5K5LET_bFbCFf20h32sajXI</recordid><startdate>20201125</startdate><enddate>20201125</enddate><creator>Fu, Yuxin</creator><creator>Cheng, Mengping</creator><creator>Li, Maolian</creator><creator>Guo, Xiaojiang</creator><creator>Wu, Yongrui</creator><creator>Wang, Jirui</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>MBDVC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-1396-0647</orcidid><orcidid>https://orcid.org/0000-0002-5019-6844</orcidid></search><sort><creationdate>20201125</creationdate><title>Identification and Characterization of PLATZ Transcription Factors in Wheat</title><author>Fu, Yuxin ; 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PLATZ has essential roles in seed endosperm development, as well as promoting cell proliferation duration in the earlier stages of the crops. In the present study, 62
genes were identified from the wheat genome, and they were unequally distributed on 15 chromosomes. According to the phylogenetic analysis, 62
genes were classified into six groups, including two groups that were unique in wheat. Members in the same groups shared similar exon-intron structures. The polyploidization, together with genome duplication of wheat, plays a crucial role in the expansion of the
family. Transcriptome data indicated a distinct divergence expression pattern of
genes that could be clustered into four modules. The
in Module b possessed a seed-specific expression pattern and displayed obvious high expression in the earlier development stage of seeds. Subcellular localization data of
suggesting that they likely perform a function as a conventional transcription factor. This study provides insight into understanding the structure divergence, evolutionary features, expression profiles, and potential function of PLATZ in wheat.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>33255649</pmid><doi>10.3390/ijms21238934</doi><orcidid>https://orcid.org/0000-0002-1396-0647</orcidid><orcidid>https://orcid.org/0000-0002-5019-6844</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Amino acids Cell cycle Cell division Cell growth Cell proliferation Chromosomes Chromosomes, Plant - genetics Deoxyribonucleic acid Divergence DNA DNA-binding protein Endosperm Evolution Evolution, Molecular Gene expression Gene Expression Regulation, Plant - genetics Genes Genome, Plant Genomes Genomics Goat grass Identification Localization Multigene Family - genetics Phylogenetics Phylogeny Plant Proteins - chemistry Plant Proteins - genetics Plant Proteins - isolation & purification Polyploidy Proteins RNA polymerase Seeds Senescence Transcription factors Transcription Factors - genetics Transcription Factors - isolation & purification Trees Triticum - chemistry Triticum - genetics Wheat Zinc plating Zinc-binding protein |
| title | Identification and Characterization of PLATZ Transcription Factors in Wheat |
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