The mitochondrial genome analysis of Paragnetina indentata (Plecoptera: Perlidae)
In this study, the entire mitochondrial genome of Paragnetina indentata was sequenced. The circular mitochondrial genome was the first mitochondrial genome representing the genus Paragnetina, which consists of 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 contro...
Gespeichert in:
| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2020-01, Vol.5 (1), p.44-45 |
|---|---|
| Hauptverfasser: | , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 45 |
|---|---|
| container_issue | 1 |
| container_start_page | 44 |
| container_title | Mitochondrial DNA. Part B. Resources |
| container_volume | 5 |
| creator | Wei, Xiping Cao, Jinjun Wang, Pengcheng Wang, Ying Li, Weihai |
| description | In this study, the entire mitochondrial genome of Paragnetina indentata was sequenced. The circular mitochondrial genome was the first mitochondrial genome representing the genus Paragnetina, which consists of 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region with the length of 15,885 bp. In the complete sequence, the A + T content for 64.1% (A for 33.6%, T for 30.5%, C for 23.3%, and G for 12.7%). Among the 13 PCGs, 11 start codons is ATN and the start codon of ND1, ND2, and ND5 genes is TTG, GTG, and GTG, respectively. In addition, 11 of the PCGs used conservative termination codon TAA or TAG, except for COII and ND5 which terminated by the single T. By using the Bayesian inference (BI) and maximum-likelihood (ML) methods, the phylogenetic relationship showed that P. indentata was closely related to Togoperla sp. and the species of Perlinae were clustered in a clade. |
| doi_str_mv | 10.1080/23802359.2019.1693927 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_7720948</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><doaj_id>oai_doaj_org_article_cf9ddad7fe43460c8fb47a729cd97cc7</doaj_id><sourcerecordid>2363170778</sourcerecordid><originalsourceid>FETCH-LOGICAL-c562t-b13b7b6670006217ec4c52961558818612b6d399cb75595c5f585c9cfcbac24e3</originalsourceid><addsrcrecordid>eNp9kk1vEzEQhlcIRKvSnwBaiUs5JPhjba85IFBVoFIlglTO1uzYmzjy2sHegPLv2TRp1XLgZGvmnWdm7LeqXlMyp6Ql7xlvCeNCzxmhek6l5pqpZ9XpPj7bJ54_up9U56WsCSFUcqW0elmdcM6lbGhzWv24Xbl68GPCVYo2ewj10sU0uBoihF3xpU59vYAMy-hGH6H20bo4wgj1xSI4TJvRZfhQL1wO3oJ796p60UMo7vx4nlU_v1zdXn6b3Xz_en35-WaGQrJx1lHeqU5KNQ0mGVUOGxRMSypE29JWUtZJy7XGTgmhBYpetAI19tgBssbxs-r6wLUJ1maT_QB5ZxJ4cxdIeWkgjx6DM9hra8Gq3jW8kQTbvmsUKKbRaoWoJtbHA2uz7QZncVowQ3gCfZqJfmWW6bdRihHdtBPg4gjI6dfWldEMvqALAaJL22JYo3hDpRBikr79R7pO2zw99qTiklNFlNoDxUGFOZWSXf8wDCVm7wFz7wGz94A5emCqe_N4k4eq-x-fBJ8OAh_7lAf4k3KwZoRdSLnPENEXw__f4y_9BsAx</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2363170778</pqid></control><display><type>article</type><title>The mitochondrial genome analysis of Paragnetina indentata (Plecoptera: Perlidae)</title><source>Taylor & Francis Open Access</source><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central</source><creator>Wei, Xiping ; Cao, Jinjun ; Wang, Pengcheng ; Wang, Ying ; Li, Weihai</creator><creatorcontrib>Wei, Xiping ; Cao, Jinjun ; Wang, Pengcheng ; Wang, Ying ; Li, Weihai</creatorcontrib><description>In this study, the entire mitochondrial genome of Paragnetina indentata was sequenced. The circular mitochondrial genome was the first mitochondrial genome representing the genus Paragnetina, which consists of 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region with the length of 15,885 bp. In the complete sequence, the A + T content for 64.1% (A for 33.6%, T for 30.5%, C for 23.3%, and G for 12.7%). Among the 13 PCGs, 11 start codons is ATN and the start codon of ND1, ND2, and ND5 genes is TTG, GTG, and GTG, respectively. In addition, 11 of the PCGs used conservative termination codon TAA or TAG, except for COII and ND5 which terminated by the single T. By using the Bayesian inference (BI) and maximum-likelihood (ML) methods, the phylogenetic relationship showed that P. indentata was closely related to Togoperla sp. and the species of Perlinae were clustered in a clade.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2019.1693927</identifier><identifier>PMID: 33366414</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Bayesian analysis ; Codons ; Genomes ; Mitochondria ; Mitochondrial genome ; Mitogenome Announcement ; Paragnetina ; Paragnetina indentata ; phylogenetics ; Phylogeny ; rRNA ; Transfer RNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2020-01, Vol.5 (1), p.44-45</ispartof><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2019</rights><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution – Non-Commercial License http://creativecommons.org/licenses/by-nc/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2019 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c562t-b13b7b6670006217ec4c52961558818612b6d399cb75595c5f585c9cfcbac24e3</citedby><cites>FETCH-LOGICAL-c562t-b13b7b6670006217ec4c52961558818612b6d399cb75595c5f585c9cfcbac24e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7720948/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7720948/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,27479,27901,27902,53766,53768,59116,59117</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33366414$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wei, Xiping</creatorcontrib><creatorcontrib>Cao, Jinjun</creatorcontrib><creatorcontrib>Wang, Pengcheng</creatorcontrib><creatorcontrib>Wang, Ying</creatorcontrib><creatorcontrib>Li, Weihai</creatorcontrib><title>The mitochondrial genome analysis of Paragnetina indentata (Plecoptera: Perlidae)</title><title>Mitochondrial DNA. Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>In this study, the entire mitochondrial genome of Paragnetina indentata was sequenced. The circular mitochondrial genome was the first mitochondrial genome representing the genus Paragnetina, which consists of 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region with the length of 15,885 bp. In the complete sequence, the A + T content for 64.1% (A for 33.6%, T for 30.5%, C for 23.3%, and G for 12.7%). Among the 13 PCGs, 11 start codons is ATN and the start codon of ND1, ND2, and ND5 genes is TTG, GTG, and GTG, respectively. In addition, 11 of the PCGs used conservative termination codon TAA or TAG, except for COII and ND5 which terminated by the single T. By using the Bayesian inference (BI) and maximum-likelihood (ML) methods, the phylogenetic relationship showed that P. indentata was closely related to Togoperla sp. and the species of Perlinae were clustered in a clade.</description><subject>Bayesian analysis</subject><subject>Codons</subject><subject>Genomes</subject><subject>Mitochondria</subject><subject>Mitochondrial genome</subject><subject>Mitogenome Announcement</subject><subject>Paragnetina</subject><subject>Paragnetina indentata</subject><subject>phylogenetics</subject><subject>Phylogeny</subject><subject>rRNA</subject><subject>Transfer RNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kk1vEzEQhlcIRKvSnwBaiUs5JPhjba85IFBVoFIlglTO1uzYmzjy2sHegPLv2TRp1XLgZGvmnWdm7LeqXlMyp6Ql7xlvCeNCzxmhek6l5pqpZ9XpPj7bJ54_up9U56WsCSFUcqW0elmdcM6lbGhzWv24Xbl68GPCVYo2ewj10sU0uBoihF3xpU59vYAMy-hGH6H20bo4wgj1xSI4TJvRZfhQL1wO3oJ796p60UMo7vx4nlU_v1zdXn6b3Xz_en35-WaGQrJx1lHeqU5KNQ0mGVUOGxRMSypE29JWUtZJy7XGTgmhBYpetAI19tgBssbxs-r6wLUJ1maT_QB5ZxJ4cxdIeWkgjx6DM9hra8Gq3jW8kQTbvmsUKKbRaoWoJtbHA2uz7QZncVowQ3gCfZqJfmWW6bdRihHdtBPg4gjI6dfWldEMvqALAaJL22JYo3hDpRBikr79R7pO2zw99qTiklNFlNoDxUGFOZWSXf8wDCVm7wFz7wGz94A5emCqe_N4k4eq-x-fBJ8OAh_7lAf4k3KwZoRdSLnPENEXw__f4y_9BsAx</recordid><startdate>20200102</startdate><enddate>20200102</enddate><creator>Wei, Xiping</creator><creator>Cao, Jinjun</creator><creator>Wang, Pengcheng</creator><creator>Wang, Ying</creator><creator>Li, Weihai</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20200102</creationdate><title>The mitochondrial genome analysis of Paragnetina indentata (Plecoptera: Perlidae)</title><author>Wei, Xiping ; Cao, Jinjun ; Wang, Pengcheng ; Wang, Ying ; Li, Weihai</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c562t-b13b7b6670006217ec4c52961558818612b6d399cb75595c5f585c9cfcbac24e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Bayesian analysis</topic><topic>Codons</topic><topic>Genomes</topic><topic>Mitochondria</topic><topic>Mitochondrial genome</topic><topic>Mitogenome Announcement</topic><topic>Paragnetina</topic><topic>Paragnetina indentata</topic><topic>phylogenetics</topic><topic>Phylogeny</topic><topic>rRNA</topic><topic>Transfer RNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wei, Xiping</creatorcontrib><creatorcontrib>Cao, Jinjun</creatorcontrib><creatorcontrib>Wang, Pengcheng</creatorcontrib><creatorcontrib>Wang, Ying</creatorcontrib><creatorcontrib>Li, Weihai</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. Part B. Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wei, Xiping</au><au>Cao, Jinjun</au><au>Wang, Pengcheng</au><au>Wang, Ying</au><au>Li, Weihai</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The mitochondrial genome analysis of Paragnetina indentata (Plecoptera: Perlidae)</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><addtitle>Mitochondrial DNA B Resour</addtitle><date>2020-01-02</date><risdate>2020</risdate><volume>5</volume><issue>1</issue><spage>44</spage><epage>45</epage><pages>44-45</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>In this study, the entire mitochondrial genome of Paragnetina indentata was sequenced. The circular mitochondrial genome was the first mitochondrial genome representing the genus Paragnetina, which consists of 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 control region with the length of 15,885 bp. In the complete sequence, the A + T content for 64.1% (A for 33.6%, T for 30.5%, C for 23.3%, and G for 12.7%). Among the 13 PCGs, 11 start codons is ATN and the start codon of ND1, ND2, and ND5 genes is TTG, GTG, and GTG, respectively. In addition, 11 of the PCGs used conservative termination codon TAA or TAG, except for COII and ND5 which terminated by the single T. By using the Bayesian inference (BI) and maximum-likelihood (ML) methods, the phylogenetic relationship showed that P. indentata was closely related to Togoperla sp. and the species of Perlinae were clustered in a clade.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>33366414</pmid><doi>10.1080/23802359.2019.1693927</doi><tpages>2</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 2380-2359 |
| ispartof | Mitochondrial DNA. Part B. Resources, 2020-01, Vol.5 (1), p.44-45 |
| issn | 2380-2359 2380-2359 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_7720948 |
| source | Taylor & Francis Open Access; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central |
| subjects | Bayesian analysis Codons Genomes Mitochondria Mitochondrial genome Mitogenome Announcement Paragnetina Paragnetina indentata phylogenetics Phylogeny rRNA Transfer RNA |
| title | The mitochondrial genome analysis of Paragnetina indentata (Plecoptera: Perlidae) |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-30T11%3A20%3A32IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=The%20mitochondrial%20genome%20analysis%20of%20Paragnetina%20indentata%20(Plecoptera:%20Perlidae)&rft.jtitle=Mitochondrial%20DNA.%20Part%20B.%20Resources&rft.au=Wei,%20Xiping&rft.date=2020-01-02&rft.volume=5&rft.issue=1&rft.spage=44&rft.epage=45&rft.pages=44-45&rft.issn=2380-2359&rft.eissn=2380-2359&rft_id=info:doi/10.1080/23802359.2019.1693927&rft_dat=%3Cproquest_pubme%3E2363170778%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2363170778&rft_id=info:pmid/33366414&rft_doaj_id=oai_doaj_org_article_cf9ddad7fe43460c8fb47a729cd97cc7&rfr_iscdi=true |