Marker assisted improvement of low soil phosphorus tolerance in the bacterial blight resistant, fine-grain type rice variety, Improved Samba Mahsuri
Improved-Samba-Mahsuri (ISM), a high-yielding, popular bacterial blight resistant (possessing Xa21, xa13 , and xa5 ), fine-grain type, low glycemic index rice variety is highly sensitive to low soil phosphorus (P). We have deployed marker-assisted backcross breeding (MABB) approach for targeted tran...
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| creator | Swamy, H. K. Mahadeva Anila, M. Kale, R. R. Rekha, G. Bhadana, V. P. Anantha, M. S. Brajendra, P. Balachiranjeevi, C. H. Hajira, S. K. Prasanna, B. Laxmi Pranathi, K. Dilip, T. Kousik, M. B. V. N. Harika, G. Surekha, K. Kumar, R. Mahender Cheralu, C. Shankar, V. Gouri Laha, G. S. Prasad, M. S. Rao, L. V. Subba Madhav, M. S. Balachandran, S. M. Sundaram, R. M. |
| description | Improved-Samba-Mahsuri (ISM), a high-yielding, popular bacterial blight resistant (possessing
Xa21, xa13
, and
xa5
), fine-grain type, low glycemic index rice variety is highly sensitive to low soil phosphorus (P). We have deployed marker-assisted backcross breeding (MABB) approach for targeted transfer of
Pup1,
a major QTL associated with low soil P tolerance, using Swarna as a donor. A new co-dominant marker, K20-1-1, which is specific for
Pup1
was designed and used for foreground selection along with functional markers specific for the bacterial blight resistance genes,
Xa21, xa13
, and
xa5
. A set of 66 polymorphic SSR marker were used for the background selection along with a pair of flanking markers for the recombination selection in backcross derived progenies and in BC
2
F
2
generation, 12 plants, which are homozygous for
Pup1
, all the three bacterial blight resistance genes and possessing agro-morphological traits equivalent to or better than ISM were selected and selfed to produce BC
2
F
3
s. They were evaluated in plots with low soil P and normal soil P at ICAR-IIRR, Hyderabad for their low soil P tolerance, and bacterial blight resistance and superior lines were advanced to BC
2
F
6
. One of the lines, when tested at multiple locations in India was found promising under both normal as well as low soil P conditions. |
| doi_str_mv | 10.1038/s41598-020-78186-5 |
| format | Article |
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Xa21, xa13
, and
xa5
), fine-grain type, low glycemic index rice variety is highly sensitive to low soil phosphorus (P). We have deployed marker-assisted backcross breeding (MABB) approach for targeted transfer of
Pup1,
a major QTL associated with low soil P tolerance, using Swarna as a donor. A new co-dominant marker, K20-1-1, which is specific for
Pup1
was designed and used for foreground selection along with functional markers specific for the bacterial blight resistance genes,
Xa21, xa13
, and
xa5
. A set of 66 polymorphic SSR marker were used for the background selection along with a pair of flanking markers for the recombination selection in backcross derived progenies and in BC
2
F
2
generation, 12 plants, which are homozygous for
Pup1
, all the three bacterial blight resistance genes and possessing agro-morphological traits equivalent to or better than ISM were selected and selfed to produce BC
2
F
3
s. They were evaluated in plots with low soil P and normal soil P at ICAR-IIRR, Hyderabad for their low soil P tolerance, and bacterial blight resistance and superior lines were advanced to BC
2
F
6
. One of the lines, when tested at multiple locations in India was found promising under both normal as well as low soil P conditions.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-020-78186-5</identifier><identifier>PMID: 33273616</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/208 ; 631/337 ; 631/449 ; Adaptation, Physiological ; Agricultural biotechnology ; Bacteria ; Bacteria - pathogenicity ; Blight ; Crops, Agricultural - genetics ; Crops, Agricultural - microbiology ; Crops, Agricultural - physiology ; Disease resistance ; Genes, Plant ; Genetic Markers - genetics ; Genomes ; Glycemic index ; Humanities and Social Sciences ; India ; multidisciplinary ; Oryza - genetics ; Oryza - microbiology ; Oryza - physiology ; Phosphorus ; Phosphorus - pharmacology ; Quantitative Trait Loci ; R&D ; Recombination ; Research & development ; Rice ; Science ; Science (multidisciplinary) ; Soil - chemistry ; Soil microorganisms ; Soils</subject><ispartof>Scientific reports, 2020-12, Vol.10 (1), p.21143-21143, Article 21143</ispartof><rights>The Author(s) 2020</rights><rights>The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c511t-d0d71523c24c3c098a59f81c279360344c14f04d397a43502377cdc52c2a4c8f3</citedby><cites>FETCH-LOGICAL-c511t-d0d71523c24c3c098a59f81c279360344c14f04d397a43502377cdc52c2a4c8f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7713241/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7713241/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27924,27925,41120,42189,51576,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33273616$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Swamy, H. K. Mahadeva</creatorcontrib><creatorcontrib>Anila, M.</creatorcontrib><creatorcontrib>Kale, R. R.</creatorcontrib><creatorcontrib>Rekha, G.</creatorcontrib><creatorcontrib>Bhadana, V. P.</creatorcontrib><creatorcontrib>Anantha, M. S.</creatorcontrib><creatorcontrib>Brajendra, P.</creatorcontrib><creatorcontrib>Balachiranjeevi, C. H.</creatorcontrib><creatorcontrib>Hajira, S. K.</creatorcontrib><creatorcontrib>Prasanna, B. Laxmi</creatorcontrib><creatorcontrib>Pranathi, K.</creatorcontrib><creatorcontrib>Dilip, T.</creatorcontrib><creatorcontrib>Kousik, M. B. V. N.</creatorcontrib><creatorcontrib>Harika, G.</creatorcontrib><creatorcontrib>Surekha, K.</creatorcontrib><creatorcontrib>Kumar, R. Mahender</creatorcontrib><creatorcontrib>Cheralu, C.</creatorcontrib><creatorcontrib>Shankar, V. Gouri</creatorcontrib><creatorcontrib>Laha, G. S.</creatorcontrib><creatorcontrib>Prasad, M. S.</creatorcontrib><creatorcontrib>Rao, L. V. Subba</creatorcontrib><creatorcontrib>Madhav, M. S.</creatorcontrib><creatorcontrib>Balachandran, S. M.</creatorcontrib><creatorcontrib>Sundaram, R. M.</creatorcontrib><title>Marker assisted improvement of low soil phosphorus tolerance in the bacterial blight resistant, fine-grain type rice variety, Improved Samba Mahsuri</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>Improved-Samba-Mahsuri (ISM), a high-yielding, popular bacterial blight resistant (possessing
Xa21, xa13
, and
xa5
), fine-grain type, low glycemic index rice variety is highly sensitive to low soil phosphorus (P). We have deployed marker-assisted backcross breeding (MABB) approach for targeted transfer of
Pup1,
a major QTL associated with low soil P tolerance, using Swarna as a donor. A new co-dominant marker, K20-1-1, which is specific for
Pup1
was designed and used for foreground selection along with functional markers specific for the bacterial blight resistance genes,
Xa21, xa13
, and
xa5
. A set of 66 polymorphic SSR marker were used for the background selection along with a pair of flanking markers for the recombination selection in backcross derived progenies and in BC
2
F
2
generation, 12 plants, which are homozygous for
Pup1
, all the three bacterial blight resistance genes and possessing agro-morphological traits equivalent to or better than ISM were selected and selfed to produce BC
2
F
3
s. They were evaluated in plots with low soil P and normal soil P at ICAR-IIRR, Hyderabad for their low soil P tolerance, and bacterial blight resistance and superior lines were advanced to BC
2
F
6
. One of the lines, when tested at multiple locations in India was found promising under both normal as well as low soil P conditions.</description><subject>631/208</subject><subject>631/337</subject><subject>631/449</subject><subject>Adaptation, Physiological</subject><subject>Agricultural biotechnology</subject><subject>Bacteria</subject><subject>Bacteria - pathogenicity</subject><subject>Blight</subject><subject>Crops, Agricultural - genetics</subject><subject>Crops, Agricultural - microbiology</subject><subject>Crops, Agricultural - physiology</subject><subject>Disease resistance</subject><subject>Genes, Plant</subject><subject>Genetic Markers - genetics</subject><subject>Genomes</subject><subject>Glycemic index</subject><subject>Humanities and Social Sciences</subject><subject>India</subject><subject>multidisciplinary</subject><subject>Oryza - genetics</subject><subject>Oryza - microbiology</subject><subject>Oryza - physiology</subject><subject>Phosphorus</subject><subject>Phosphorus - pharmacology</subject><subject>Quantitative Trait Loci</subject><subject>R&D</subject><subject>Recombination</subject><subject>Research & development</subject><subject>Rice</subject><subject>Science</subject><subject>Science (multidisciplinary)</subject><subject>Soil - chemistry</subject><subject>Soil microorganisms</subject><subject>Soils</subject><issn>2045-2322</issn><issn>2045-2322</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kc1u1TAQhSMEolXpC7BAltiwaMC_cbxBQhWUSq1YAGtrruPcuDhxsJ2L7nvwwPUlpRQWWLI80nxzxkenqp4T_Jpg1r5JnAjV1pjiWrakbWrxqDqmmIuaMkofP6iPqtOUbnA5gipO1NPqiDEqWUOa4-rnNcRvNiJIyaVsO-TGOYadHe2UUeiRDz9QCs6jeQip3LgklIO3ESZjkZtQHizagMk2OvBo4912yCjagxpM-Qz1brL1NsIB3c8WRVfmdhCdzfszdLlu69BnGDeArmFIS3TPqic9-GRP796T6uuH91_OP9ZXny4uz99d1UYQkusOd5IIygzlhhmsWhCqb4mhUrEGM84N4T3mHVMSOBOYMilNZwQ1FLhpe3ZSvV1152Uz2s4UzxG8nqMbIe51AKf_7kxu0Nuw01ISRjkpAq_uBGL4vtiU9eiSsd7DZMOSNOWNbIhqlSroy3_Qm7DEqdgrlGS0VVzJQtGVMjGkFG1__xmC9SF3veauS-76V-5alKEXD23cj_xOuQBsBVJpTVsb_-z-j-wtWHu7Kg</recordid><startdate>20201203</startdate><enddate>20201203</enddate><creator>Swamy, H. K. Mahadeva</creator><creator>Anila, M.</creator><creator>Kale, R. R.</creator><creator>Rekha, G.</creator><creator>Bhadana, V. P.</creator><creator>Anantha, M. S.</creator><creator>Brajendra, P.</creator><creator>Balachiranjeevi, C. H.</creator><creator>Hajira, S. K.</creator><creator>Prasanna, B. Laxmi</creator><creator>Pranathi, K.</creator><creator>Dilip, T.</creator><creator>Kousik, M. B. V. N.</creator><creator>Harika, G.</creator><creator>Surekha, K.</creator><creator>Kumar, R. Mahender</creator><creator>Cheralu, C.</creator><creator>Shankar, V. Gouri</creator><creator>Laha, G. S.</creator><creator>Prasad, M. S.</creator><creator>Rao, L. V. Subba</creator><creator>Madhav, M. S.</creator><creator>Balachandran, S. M.</creator><creator>Sundaram, R. M.</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20201203</creationdate><title>Marker assisted improvement of low soil phosphorus tolerance in the bacterial blight resistant, fine-grain type rice variety, Improved Samba Mahsuri</title><author>Swamy, H. K. Mahadeva ; Anila, M. ; Kale, R. R. ; Rekha, G. ; Bhadana, V. P. ; Anantha, M. S. ; Brajendra, P. ; Balachiranjeevi, C. H. ; Hajira, S. K. ; Prasanna, B. Laxmi ; Pranathi, K. ; Dilip, T. ; Kousik, M. B. V. N. ; Harika, G. ; Surekha, K. ; Kumar, R. Mahender ; Cheralu, C. ; Shankar, V. Gouri ; Laha, G. S. ; Prasad, M. S. ; Rao, L. V. Subba ; Madhav, M. S. ; Balachandran, S. M. ; Sundaram, R. 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M.</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Swamy, H. K. Mahadeva</au><au>Anila, M.</au><au>Kale, R. R.</au><au>Rekha, G.</au><au>Bhadana, V. P.</au><au>Anantha, M. S.</au><au>Brajendra, P.</au><au>Balachiranjeevi, C. H.</au><au>Hajira, S. K.</au><au>Prasanna, B. Laxmi</au><au>Pranathi, K.</au><au>Dilip, T.</au><au>Kousik, M. B. V. N.</au><au>Harika, G.</au><au>Surekha, K.</au><au>Kumar, R. Mahender</au><au>Cheralu, C.</au><au>Shankar, V. Gouri</au><au>Laha, G. S.</au><au>Prasad, M. S.</au><au>Rao, L. V. Subba</au><au>Madhav, M. S.</au><au>Balachandran, S. M.</au><au>Sundaram, R. M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Marker assisted improvement of low soil phosphorus tolerance in the bacterial blight resistant, fine-grain type rice variety, Improved Samba Mahsuri</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2020-12-03</date><risdate>2020</risdate><volume>10</volume><issue>1</issue><spage>21143</spage><epage>21143</epage><pages>21143-21143</pages><artnum>21143</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>Improved-Samba-Mahsuri (ISM), a high-yielding, popular bacterial blight resistant (possessing
Xa21, xa13
, and
xa5
), fine-grain type, low glycemic index rice variety is highly sensitive to low soil phosphorus (P). We have deployed marker-assisted backcross breeding (MABB) approach for targeted transfer of
Pup1,
a major QTL associated with low soil P tolerance, using Swarna as a donor. A new co-dominant marker, K20-1-1, which is specific for
Pup1
was designed and used for foreground selection along with functional markers specific for the bacterial blight resistance genes,
Xa21, xa13
, and
xa5
. A set of 66 polymorphic SSR marker were used for the background selection along with a pair of flanking markers for the recombination selection in backcross derived progenies and in BC
2
F
2
generation, 12 plants, which are homozygous for
Pup1
, all the three bacterial blight resistance genes and possessing agro-morphological traits equivalent to or better than ISM were selected and selfed to produce BC
2
F
3
s. They were evaluated in plots with low soil P and normal soil P at ICAR-IIRR, Hyderabad for their low soil P tolerance, and bacterial blight resistance and superior lines were advanced to BC
2
F
6
. One of the lines, when tested at multiple locations in India was found promising under both normal as well as low soil P conditions.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>33273616</pmid><doi>10.1038/s41598-020-78186-5</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 2045-2322 |
| ispartof | Scientific reports, 2020-12, Vol.10 (1), p.21143-21143, Article 21143 |
| issn | 2045-2322 2045-2322 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_7713241 |
| source | MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Springer Nature OA Free Journals; Nature Free; PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | 631/208 631/337 631/449 Adaptation, Physiological Agricultural biotechnology Bacteria Bacteria - pathogenicity Blight Crops, Agricultural - genetics Crops, Agricultural - microbiology Crops, Agricultural - physiology Disease resistance Genes, Plant Genetic Markers - genetics Genomes Glycemic index Humanities and Social Sciences India multidisciplinary Oryza - genetics Oryza - microbiology Oryza - physiology Phosphorus Phosphorus - pharmacology Quantitative Trait Loci R&D Recombination Research & development Rice Science Science (multidisciplinary) Soil - chemistry Soil microorganisms Soils |
| title | Marker assisted improvement of low soil phosphorus tolerance in the bacterial blight resistant, fine-grain type rice variety, Improved Samba Mahsuri |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-19T04%3A08%3A39IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Marker%20assisted%20improvement%20of%20low%20soil%20phosphorus%20tolerance%20in%20the%20bacterial%20blight%20resistant,%20fine-grain%20type%20rice%20variety,%20Improved%20Samba%20Mahsuri&rft.jtitle=Scientific%20reports&rft.au=Swamy,%20H.%20K.%20Mahadeva&rft.date=2020-12-03&rft.volume=10&rft.issue=1&rft.spage=21143&rft.epage=21143&rft.pages=21143-21143&rft.artnum=21143&rft.issn=2045-2322&rft.eissn=2045-2322&rft_id=info:doi/10.1038/s41598-020-78186-5&rft_dat=%3Cproquest_pubme%3E2467619899%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2473289497&rft_id=info:pmid/33273616&rfr_iscdi=true |