FAM225B Is a Prognostic lncRNA for Patients with Recurrent Glioblastoma

Objective. The overall survival of patients with recurrent glioblastoma (rGBM) is quite different, so clinical outcome prediction is necessary to guide personalized clinical treatment for patients with rGBM. The expression level of lncRNA FAM225B was analyzed to determine its prognostic value in rGB...

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Veröffentlicht in:Disease markers 2020, Vol.2020 (2020), p.1-7
Hauptverfasser: Zhao, Jizong, Lin, Fa, Zeng, Chaofan, Ge, Peicong, Zhang, Qian, Li, Junsheng, Wang, Wen
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container_issue 2020
container_start_page 1
container_title Disease markers
container_volume 2020
creator Zhao, Jizong
Lin, Fa
Zeng, Chaofan
Ge, Peicong
Zhang, Qian
Li, Junsheng
Wang, Wen
description Objective. The overall survival of patients with recurrent glioblastoma (rGBM) is quite different, so clinical outcome prediction is necessary to guide personalized clinical treatment for patients with rGBM. The expression level of lncRNA FAM225B was analyzed to determine its prognostic value in rGBMs. Methods. We collected 109 samples of Chinese Glioma Genome Atlas (CGGA) RNA sequencing dataset and divided into training set and validation set. Then, we analyzed the expression of FAM225B, clinical characteristics, and overall survival (OS) information. Kaplan-Meier survival analysis was used to estimate the OS distributions. The prognostic value of FAM225B in rGBMs was tested by univariate and multivariate Cox regression analyses. Moreover, we analyzed the biological processes and signaling pathways of FAM225B. Results. We found that FAM225B was upregulated in rGBMs (P=0.0009). The expression of FAM225B increased with the grades of gliomas (P
doi_str_mv 10.1155/2020/8888085
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The overall survival of patients with recurrent glioblastoma (rGBM) is quite different, so clinical outcome prediction is necessary to guide personalized clinical treatment for patients with rGBM. The expression level of lncRNA FAM225B was analyzed to determine its prognostic value in rGBMs. Methods. We collected 109 samples of Chinese Glioma Genome Atlas (CGGA) RNA sequencing dataset and divided into training set and validation set. Then, we analyzed the expression of FAM225B, clinical characteristics, and overall survival (OS) information. Kaplan-Meier survival analysis was used to estimate the OS distributions. The prognostic value of FAM225B in rGBMs was tested by univariate and multivariate Cox regression analyses. Moreover, we analyzed the biological processes and signaling pathways of FAM225B. Results. We found that FAM225B was upregulated in rGBMs (P=0.0009). The expression of FAM225B increased with the grades of gliomas (P&lt;0.0001). The OS of rGBMs in the low-expression group was significantly longer than that in the high-expression group (P=0.0041). Similar result was found in the training set (P=0.0340) and verified in the validation set (P=0.0292). In multivariate Cox regression analysis, FAM225B was identified to be an independent prognostic factor for rGBMs (P=0.003). Biological process and KEGG pathway analyses implied FAM225B mainly played a functional role on transcription, regulation of transcription, cell migration, focal adhesion, etc. Conclusions. FAM225B is expected to be as a new prognostic biomarker for the identification of rGBM patients with poor outcome. And our study provided a potential therapeutic target for rGBMs.</description><identifier>ISSN: 0278-0240</identifier><identifier>EISSN: 1875-8630</identifier><identifier>DOI: 10.1155/2020/8888085</identifier><identifier>PMID: 33299501</identifier><language>eng</language><publisher>Cairo, Egypt: Hindawi Publishing Corporation</publisher><subject>Biological activity ; Biomarkers ; Biomarkers, Tumor - genetics ; Brain Neoplasms - genetics ; Brain Neoplasms - mortality ; Brain Neoplasms - pathology ; Cell adhesion &amp; migration ; Cell cycle ; Cell division ; Cell migration ; Chemotherapy ; Datasets ; Female ; Gene Expression Regulation, Neoplastic ; Gene regulation ; Gene Regulatory Networks ; Gene sequencing ; Genomes ; Glioblastoma ; Glioblastoma - genetics ; Glioblastoma - mortality ; Glioblastoma - pathology ; Glioma ; Humans ; Male ; Medical prognosis ; Multivariate analysis ; Neoplasm Grading ; Neoplasm Recurrence, Local - genetics ; Neoplasm Recurrence, Local - mortality ; Neoplasm Recurrence, Local - pathology ; Patients ; Prognosis ; Radiation therapy ; Regression Analysis ; Ribonucleic acid ; RNA ; RNA, Long Noncoding - genetics ; Software ; Survival ; Survival Analysis ; Training ; Transcription ; Tumors ; Up-Regulation</subject><ispartof>Disease markers, 2020, Vol.2020 (2020), p.1-7</ispartof><rights>Copyright © 2020 Junsheng Li et al.</rights><rights>Copyright © 2020 Junsheng Li et al. This is an open access article distributed under the Creative Commons Attribution License (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. https://creativecommons.org/licenses/by/4.0</rights><rights>Copyright © 2020 Junsheng Li et al. 2020</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c471t-8d1b94daaa502b998eb4d5403a69b90e5ca37e282e3faa03d7f890731ad425cc3</citedby><cites>FETCH-LOGICAL-c471t-8d1b94daaa502b998eb4d5403a69b90e5ca37e282e3faa03d7f890731ad425cc3</cites><orcidid>0000-0001-7304-0255 ; 0000-0002-6735-460X ; 0000-0001-5099-9834 ; 0000-0002-4047-0256</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7704151/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7704151/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,4009,27902,27903,27904,53769,53771</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33299501$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Tu, Wen-Jun</contributor><contributor>Wen-Jun Tu</contributor><creatorcontrib>Zhao, Jizong</creatorcontrib><creatorcontrib>Lin, Fa</creatorcontrib><creatorcontrib>Zeng, Chaofan</creatorcontrib><creatorcontrib>Ge, Peicong</creatorcontrib><creatorcontrib>Zhang, Qian</creatorcontrib><creatorcontrib>Li, Junsheng</creatorcontrib><creatorcontrib>Wang, Wen</creatorcontrib><title>FAM225B Is a Prognostic lncRNA for Patients with Recurrent Glioblastoma</title><title>Disease markers</title><addtitle>Dis Markers</addtitle><description>Objective. The overall survival of patients with recurrent glioblastoma (rGBM) is quite different, so clinical outcome prediction is necessary to guide personalized clinical treatment for patients with rGBM. The expression level of lncRNA FAM225B was analyzed to determine its prognostic value in rGBMs. Methods. We collected 109 samples of Chinese Glioma Genome Atlas (CGGA) RNA sequencing dataset and divided into training set and validation set. Then, we analyzed the expression of FAM225B, clinical characteristics, and overall survival (OS) information. Kaplan-Meier survival analysis was used to estimate the OS distributions. The prognostic value of FAM225B in rGBMs was tested by univariate and multivariate Cox regression analyses. Moreover, we analyzed the biological processes and signaling pathways of FAM225B. Results. We found that FAM225B was upregulated in rGBMs (P=0.0009). The expression of FAM225B increased with the grades of gliomas (P&lt;0.0001). The OS of rGBMs in the low-expression group was significantly longer than that in the high-expression group (P=0.0041). Similar result was found in the training set (P=0.0340) and verified in the validation set (P=0.0292). In multivariate Cox regression analysis, FAM225B was identified to be an independent prognostic factor for rGBMs (P=0.003). Biological process and KEGG pathway analyses implied FAM225B mainly played a functional role on transcription, regulation of transcription, cell migration, focal adhesion, etc. Conclusions. FAM225B is expected to be as a new prognostic biomarker for the identification of rGBM patients with poor outcome. 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The overall survival of patients with recurrent glioblastoma (rGBM) is quite different, so clinical outcome prediction is necessary to guide personalized clinical treatment for patients with rGBM. The expression level of lncRNA FAM225B was analyzed to determine its prognostic value in rGBMs. Methods. We collected 109 samples of Chinese Glioma Genome Atlas (CGGA) RNA sequencing dataset and divided into training set and validation set. Then, we analyzed the expression of FAM225B, clinical characteristics, and overall survival (OS) information. Kaplan-Meier survival analysis was used to estimate the OS distributions. The prognostic value of FAM225B in rGBMs was tested by univariate and multivariate Cox regression analyses. Moreover, we analyzed the biological processes and signaling pathways of FAM225B. Results. We found that FAM225B was upregulated in rGBMs (P=0.0009). The expression of FAM225B increased with the grades of gliomas (P&lt;0.0001). The OS of rGBMs in the low-expression group was significantly longer than that in the high-expression group (P=0.0041). Similar result was found in the training set (P=0.0340) and verified in the validation set (P=0.0292). In multivariate Cox regression analysis, FAM225B was identified to be an independent prognostic factor for rGBMs (P=0.003). Biological process and KEGG pathway analyses implied FAM225B mainly played a functional role on transcription, regulation of transcription, cell migration, focal adhesion, etc. Conclusions. FAM225B is expected to be as a new prognostic biomarker for the identification of rGBM patients with poor outcome. And our study provided a potential therapeutic target for rGBMs.</abstract><cop>Cairo, Egypt</cop><pub>Hindawi Publishing Corporation</pub><pmid>33299501</pmid><doi>10.1155/2020/8888085</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0001-7304-0255</orcidid><orcidid>https://orcid.org/0000-0002-6735-460X</orcidid><orcidid>https://orcid.org/0000-0001-5099-9834</orcidid><orcidid>https://orcid.org/0000-0002-4047-0256</orcidid><oa>free_for_read</oa></addata></record>
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subjects Biological activity
Biomarkers
Biomarkers, Tumor - genetics
Brain Neoplasms - genetics
Brain Neoplasms - mortality
Brain Neoplasms - pathology
Cell adhesion & migration
Cell cycle
Cell division
Cell migration
Chemotherapy
Datasets
Female
Gene Expression Regulation, Neoplastic
Gene regulation
Gene Regulatory Networks
Gene sequencing
Genomes
Glioblastoma
Glioblastoma - genetics
Glioblastoma - mortality
Glioblastoma - pathology
Glioma
Humans
Male
Medical prognosis
Multivariate analysis
Neoplasm Grading
Neoplasm Recurrence, Local - genetics
Neoplasm Recurrence, Local - mortality
Neoplasm Recurrence, Local - pathology
Patients
Prognosis
Radiation therapy
Regression Analysis
Ribonucleic acid
RNA
RNA, Long Noncoding - genetics
Software
Survival
Survival Analysis
Training
Transcription
Tumors
Up-Regulation
title FAM225B Is a Prognostic lncRNA for Patients with Recurrent Glioblastoma
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