Prototyping Sentinel-2 green LAI and brown LAI products for cropland monitoring
For agricultural applications, identification of non-photosynthetic above-ground vegetation is of great interest as it contributes to assess harvest practices, detecting crop residues or drought events, as well as to better predict the carbon, water and nutrients uptake. While the mapping of green L...
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creator | Amin, Eatidal Verrelst, Jochem Rivera-Caicedo, Juan Pablo Pipia, Luca Ruiz-Verdú, Antonio Moreno, José |
description | For agricultural applications, identification of non-photosynthetic above-ground vegetation is of great interest as it contributes to assess harvest practices, detecting crop residues or drought events, as well as to better predict the carbon, water and nutrients uptake. While the mapping of green Leaf Area Index (LAI) is well established, current operational retrieval models are not calibrated for LAI estimation over senescent, brown vegetation. This not only leads to an underestimation of LAI when crops are ripening, but is also a missed monitoring opportunity. The high spatial and temporal resolution of Sentinel-2 (S2) satellites constellation offers the possibility to estimate brown LAI (LAIB) next to green LAI (LAIG). By using LAI ground measurements from multiple campaigns associated with airborne or satellite spectra, Gaussian processes regression (GPR) models were developed for both LAIG and LAIB, providing alongside associated uncertainty estimates, which allows to mask out unreliable LAI retrievals with higher uncertainties. A processing chain was implemented to apply both models to S2 images, generating a multiband LAI product at 20 m spatial resolution. The models were adequately validated with in-situ data from various European study sites (LAIG: R2 = 0.7, RMSE = 0.67 m2/m2; LAIB: R2 = 0.62, RMSE = 0.43 m2/m2). Thanks to the S2 bands in the red edge (B5: 705 nm and B6: 740 nm) and in the shortwave infrared (B12: 2190 nm) a distinction between LAIG and LAIB can be achieved. To demonstrate the capability of LAIB to identify when crops start senescing, S2 time series were processed over multiple European study sites and seasonal maps were produced, which show the onset of crop senescence after the green vegetation peak. Particularly, the LAIB product permits the detection of harvest (i.e., sudden drop in LAIB) and the determination of crop residues (i.e., remaining LAIB), although a better spectral sampling in the shortwave infrared would have been desirable to disentangle brown LAI from soil variability and its perturbing effects. Finally, a single total LAI product was created by merging LAIG and LAIB estimates, and then compared to the LAI derived from S2 L2B biophysical processor integrated in SNAP. The spatiotemporal analysis results confirmed the improvement of the proposed descriptors with respect to the standard SNAP LAI product accounting only for photosynthetically active green vegetation.
•Sentinel-2 bands can explicitly identify non-p |
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•Sentinel-2 bands can explicitly identify non-photosynthetic vegetation.•LAI is quantified over green (LAIG) and senescent (LAIB) vegetation using GPR.•GPR provides uncertainty estimates, here used for mapping LAIG with LAIB.•LAIB detects dry vegetation residues and harvest events.•LAI total time series capture the whole phenological evolution over croplands.</description><identifier>ISSN: 0034-4257</identifier><identifier>EISSN: 1879-0704</identifier><identifier>DOI: 10.1016/j.rse.2020.112168</identifier><identifier>PMID: 36060228</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Agricultural land ; Airborne sensing ; Brown LAI ; Crop residues ; Crops ; Drought ; Gaussian process ; Gaussian processes regression (GPR) ; Green LAI ; Harvesting ; Leaf area ; Leaf area index ; Machine learning ; Microprocessors ; Monitoring ; Nutrients ; Photosynthesis ; Photosynthetic and non-photosynthetic vegetation ; Prototyping ; Regression analysis ; Residues ; Ripening ; Satellite constellations ; Satellites ; Senescence ; Sentinel-2 ; Short wave radiation ; Spatial discrimination ; Spatial resolution ; Temporal resolution ; Uncertainty ; Vegetation</subject><ispartof>Remote sensing of environment, 2021-03, Vol.255, p.112168, Article 112168</ispartof><rights>2020 Elsevier Inc.</rights><rights>Copyright Elsevier BV Mar 15, 2021</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c479t-aa3ea09ff098274cfa20b7834a6ab0eeb9cdbb3ee8201c4d1daf0174eabf48413</citedby><cites>FETCH-LOGICAL-c479t-aa3ea09ff098274cfa20b7834a6ab0eeb9cdbb3ee8201c4d1daf0174eabf48413</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.rse.2020.112168$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>230,314,780,784,885,3548,27923,27924,45994</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36060228$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Amin, Eatidal</creatorcontrib><creatorcontrib>Verrelst, Jochem</creatorcontrib><creatorcontrib>Rivera-Caicedo, Juan Pablo</creatorcontrib><creatorcontrib>Pipia, Luca</creatorcontrib><creatorcontrib>Ruiz-Verdú, Antonio</creatorcontrib><creatorcontrib>Moreno, José</creatorcontrib><title>Prototyping Sentinel-2 green LAI and brown LAI products for cropland monitoring</title><title>Remote sensing of environment</title><addtitle>Remote Sens Environ</addtitle><description>For agricultural applications, identification of non-photosynthetic above-ground vegetation is of great interest as it contributes to assess harvest practices, detecting crop residues or drought events, as well as to better predict the carbon, water and nutrients uptake. While the mapping of green Leaf Area Index (LAI) is well established, current operational retrieval models are not calibrated for LAI estimation over senescent, brown vegetation. This not only leads to an underestimation of LAI when crops are ripening, but is also a missed monitoring opportunity. The high spatial and temporal resolution of Sentinel-2 (S2) satellites constellation offers the possibility to estimate brown LAI (LAIB) next to green LAI (LAIG). By using LAI ground measurements from multiple campaigns associated with airborne or satellite spectra, Gaussian processes regression (GPR) models were developed for both LAIG and LAIB, providing alongside associated uncertainty estimates, which allows to mask out unreliable LAI retrievals with higher uncertainties. A processing chain was implemented to apply both models to S2 images, generating a multiband LAI product at 20 m spatial resolution. The models were adequately validated with in-situ data from various European study sites (LAIG: R2 = 0.7, RMSE = 0.67 m2/m2; LAIB: R2 = 0.62, RMSE = 0.43 m2/m2). Thanks to the S2 bands in the red edge (B5: 705 nm and B6: 740 nm) and in the shortwave infrared (B12: 2190 nm) a distinction between LAIG and LAIB can be achieved. To demonstrate the capability of LAIB to identify when crops start senescing, S2 time series were processed over multiple European study sites and seasonal maps were produced, which show the onset of crop senescence after the green vegetation peak. Particularly, the LAIB product permits the detection of harvest (i.e., sudden drop in LAIB) and the determination of crop residues (i.e., remaining LAIB), although a better spectral sampling in the shortwave infrared would have been desirable to disentangle brown LAI from soil variability and its perturbing effects. Finally, a single total LAI product was created by merging LAIG and LAIB estimates, and then compared to the LAI derived from S2 L2B biophysical processor integrated in SNAP. The spatiotemporal analysis results confirmed the improvement of the proposed descriptors with respect to the standard SNAP LAI product accounting only for photosynthetically active green vegetation.
•Sentinel-2 bands can explicitly identify non-photosynthetic vegetation.•LAI is quantified over green (LAIG) and senescent (LAIB) vegetation using GPR.•GPR provides uncertainty estimates, here used for mapping LAIG with LAIB.•LAIB detects dry vegetation residues and harvest events.•LAI total time series capture the whole phenological evolution over croplands.</description><subject>Agricultural land</subject><subject>Airborne sensing</subject><subject>Brown LAI</subject><subject>Crop residues</subject><subject>Crops</subject><subject>Drought</subject><subject>Gaussian process</subject><subject>Gaussian processes regression (GPR)</subject><subject>Green LAI</subject><subject>Harvesting</subject><subject>Leaf area</subject><subject>Leaf area index</subject><subject>Machine learning</subject><subject>Microprocessors</subject><subject>Monitoring</subject><subject>Nutrients</subject><subject>Photosynthesis</subject><subject>Photosynthetic and non-photosynthetic vegetation</subject><subject>Prototyping</subject><subject>Regression analysis</subject><subject>Residues</subject><subject>Ripening</subject><subject>Satellite constellations</subject><subject>Satellites</subject><subject>Senescence</subject><subject>Sentinel-2</subject><subject>Short wave radiation</subject><subject>Spatial discrimination</subject><subject>Spatial resolution</subject><subject>Temporal resolution</subject><subject>Uncertainty</subject><subject>Vegetation</subject><issn>0034-4257</issn><issn>1879-0704</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNp9kU9r3DAQxUVpabZpP0AvxdBLL97OyFpLplAIoX8CCykkPQtZHm-1eCVXshPy7aPFaWhz6GkY5jePefMYe4uwRsD6434dE6058Nwjx1o9YytUsilBgnjOVgCVKAXfyBP2KqU9AG6UxJfspKqhBs7Vil3-iGEK093o_K64Ij85T0PJi10k8sX27KIwvivaGG6Xboyhm-2Uij7EwsYwDsf5IXg3hZg1XrMXvRkSvXmop-zn1y_X59_L7eW3i_OzbWmFbKbSmIoMNH0PjeJS2N5waKWqhKlNC0RtY7u2rYgUB7Siw870gFKQaXuhBFan7POiO87tgTqbL49m0GN0BxPvdDBO_zvx7pfehRsta6yEqrPAhweBGH7PlCZ9cMnSkP1QmJPmEpoGKylERt8_Qfdhjj7b03wDFUreIM8ULlT-SkqR-sdjEPQxLr3XOS59jEsvceWdd3-7eNz4k08GPi0A5V_eOIo6WUfeUuci2Ul3wf1H_h7Qr6Zl</recordid><startdate>20210315</startdate><enddate>20210315</enddate><creator>Amin, Eatidal</creator><creator>Verrelst, Jochem</creator><creator>Rivera-Caicedo, Juan Pablo</creator><creator>Pipia, Luca</creator><creator>Ruiz-Verdú, Antonio</creator><creator>Moreno, José</creator><general>Elsevier Inc</general><general>Elsevier BV</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QF</scope><scope>7QO</scope><scope>7QQ</scope><scope>7SC</scope><scope>7SE</scope><scope>7SN</scope><scope>7SP</scope><scope>7SR</scope><scope>7TA</scope><scope>7TB</scope><scope>7TG</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>C1K</scope><scope>F28</scope><scope>FR3</scope><scope>H8D</scope><scope>H8G</scope><scope>JG9</scope><scope>JQ2</scope><scope>KL.</scope><scope>KR7</scope><scope>L7M</scope><scope>L~C</scope><scope>L~D</scope><scope>P64</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20210315</creationdate><title>Prototyping Sentinel-2 green LAI and brown LAI products for cropland monitoring</title><author>Amin, Eatidal ; Verrelst, Jochem ; Rivera-Caicedo, Juan Pablo ; Pipia, Luca ; Ruiz-Verdú, Antonio ; Moreno, José</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c479t-aa3ea09ff098274cfa20b7834a6ab0eeb9cdbb3ee8201c4d1daf0174eabf48413</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Agricultural land</topic><topic>Airborne sensing</topic><topic>Brown LAI</topic><topic>Crop residues</topic><topic>Crops</topic><topic>Drought</topic><topic>Gaussian process</topic><topic>Gaussian processes regression (GPR)</topic><topic>Green LAI</topic><topic>Harvesting</topic><topic>Leaf area</topic><topic>Leaf area index</topic><topic>Machine learning</topic><topic>Microprocessors</topic><topic>Monitoring</topic><topic>Nutrients</topic><topic>Photosynthesis</topic><topic>Photosynthetic and non-photosynthetic vegetation</topic><topic>Prototyping</topic><topic>Regression analysis</topic><topic>Residues</topic><topic>Ripening</topic><topic>Satellite constellations</topic><topic>Satellites</topic><topic>Senescence</topic><topic>Sentinel-2</topic><topic>Short wave radiation</topic><topic>Spatial discrimination</topic><topic>Spatial resolution</topic><topic>Temporal resolution</topic><topic>Uncertainty</topic><topic>Vegetation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Amin, Eatidal</creatorcontrib><creatorcontrib>Verrelst, Jochem</creatorcontrib><creatorcontrib>Rivera-Caicedo, Juan Pablo</creatorcontrib><creatorcontrib>Pipia, Luca</creatorcontrib><creatorcontrib>Ruiz-Verdú, Antonio</creatorcontrib><creatorcontrib>Moreno, José</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Aluminium Industry Abstracts</collection><collection>Biotechnology Research Abstracts</collection><collection>Ceramic Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>Corrosion Abstracts</collection><collection>Ecology Abstracts</collection><collection>Electronics & Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Materials Business File</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Meteorological & Geoastrophysical Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ANTE: Abstracts in New Technology & Engineering</collection><collection>Engineering Research Database</collection><collection>Aerospace Database</collection><collection>Copper Technical Reference Library</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Meteorological & Geoastrophysical Abstracts - Academic</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Remote sensing of environment</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Amin, Eatidal</au><au>Verrelst, Jochem</au><au>Rivera-Caicedo, Juan Pablo</au><au>Pipia, Luca</au><au>Ruiz-Verdú, Antonio</au><au>Moreno, José</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Prototyping Sentinel-2 green LAI and brown LAI products for cropland monitoring</atitle><jtitle>Remote sensing of environment</jtitle><addtitle>Remote Sens Environ</addtitle><date>2021-03-15</date><risdate>2021</risdate><volume>255</volume><spage>112168</spage><pages>112168-</pages><artnum>112168</artnum><issn>0034-4257</issn><eissn>1879-0704</eissn><abstract>For agricultural applications, identification of non-photosynthetic above-ground vegetation is of great interest as it contributes to assess harvest practices, detecting crop residues or drought events, as well as to better predict the carbon, water and nutrients uptake. While the mapping of green Leaf Area Index (LAI) is well established, current operational retrieval models are not calibrated for LAI estimation over senescent, brown vegetation. This not only leads to an underestimation of LAI when crops are ripening, but is also a missed monitoring opportunity. The high spatial and temporal resolution of Sentinel-2 (S2) satellites constellation offers the possibility to estimate brown LAI (LAIB) next to green LAI (LAIG). By using LAI ground measurements from multiple campaigns associated with airborne or satellite spectra, Gaussian processes regression (GPR) models were developed for both LAIG and LAIB, providing alongside associated uncertainty estimates, which allows to mask out unreliable LAI retrievals with higher uncertainties. A processing chain was implemented to apply both models to S2 images, generating a multiband LAI product at 20 m spatial resolution. The models were adequately validated with in-situ data from various European study sites (LAIG: R2 = 0.7, RMSE = 0.67 m2/m2; LAIB: R2 = 0.62, RMSE = 0.43 m2/m2). Thanks to the S2 bands in the red edge (B5: 705 nm and B6: 740 nm) and in the shortwave infrared (B12: 2190 nm) a distinction between LAIG and LAIB can be achieved. To demonstrate the capability of LAIB to identify when crops start senescing, S2 time series were processed over multiple European study sites and seasonal maps were produced, which show the onset of crop senescence after the green vegetation peak. Particularly, the LAIB product permits the detection of harvest (i.e., sudden drop in LAIB) and the determination of crop residues (i.e., remaining LAIB), although a better spectral sampling in the shortwave infrared would have been desirable to disentangle brown LAI from soil variability and its perturbing effects. Finally, a single total LAI product was created by merging LAIG and LAIB estimates, and then compared to the LAI derived from S2 L2B biophysical processor integrated in SNAP. The spatiotemporal analysis results confirmed the improvement of the proposed descriptors with respect to the standard SNAP LAI product accounting only for photosynthetically active green vegetation.
•Sentinel-2 bands can explicitly identify non-photosynthetic vegetation.•LAI is quantified over green (LAIG) and senescent (LAIB) vegetation using GPR.•GPR provides uncertainty estimates, here used for mapping LAIG with LAIB.•LAIB detects dry vegetation residues and harvest events.•LAI total time series capture the whole phenological evolution over croplands.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>36060228</pmid><doi>10.1016/j.rse.2020.112168</doi><oa>free_for_read</oa></addata></record> |
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subjects | Agricultural land Airborne sensing Brown LAI Crop residues Crops Drought Gaussian process Gaussian processes regression (GPR) Green LAI Harvesting Leaf area Leaf area index Machine learning Microprocessors Monitoring Nutrients Photosynthesis Photosynthetic and non-photosynthetic vegetation Prototyping Regression analysis Residues Ripening Satellite constellations Satellites Senescence Sentinel-2 Short wave radiation Spatial discrimination Spatial resolution Temporal resolution Uncertainty Vegetation |
title | Prototyping Sentinel-2 green LAI and brown LAI products for cropland monitoring |
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