The mutational signature profile of known and suspected human carcinogens in mice
Epidemiological studies have identified many environmental agents that appear to significantly increase cancer risk in human populations. By analyzing tumor genomes from mice chronically exposed to 1 of 20 known or suspected human carcinogens, we reveal that most agents do not generate distinct muta...
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Veröffentlicht in: | Nature genetics 2020-11, Vol.52 (11), p.1189-1197 |
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creator | Riva, Laura Pandiri, Arun R. Li, Yun Rose Droop, Alastair Hewinson, James Quail, Michael A. Iyer, Vivek Shepherd, Rebecca Herbert, Ronald A. Campbell, Peter J. Sills, Robert C. Alexandrov, Ludmil B. Balmain, Allan Adams, David J. |
description | Epidemiological studies have identified many environmental agents that appear to significantly increase cancer risk in human populations. By analyzing tumor genomes from mice chronically exposed to 1 of 20 known or suspected human carcinogens, we reveal that most agents do not generate distinct mutational signatures or increase mutation burden, with most mutations, including driver mutations, resulting from tissue-specific endogenous processes. We identify signatures resulting from exposure to cobalt and vinylidene chloride and link distinct human signatures (SBS19 and SBS42) with 1,2,3-trichloropropane, a haloalkane and pollutant of drinking water, and find these and other signatures in human tumor genomes. We define the cross-species genomic landscape of tumors induced by an important compendium of agents with relevance to human health.
A genomic analysis of tumors in mice caused by known or suspected carcinogens shows that most carcinogens do not generate distinct mutational signatures. |
doi_str_mv | 10.1038/s41588-020-0692-4 |
format | Article |
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A genomic analysis of tumors in mice caused by known or suspected carcinogens shows that most carcinogens do not generate distinct mutational signatures.</description><identifier>ISSN: 1061-4036</identifier><identifier>EISSN: 1546-1718</identifier><identifier>DOI: 10.1038/s41588-020-0692-4</identifier><identifier>PMID: 32989322</identifier><language>eng</language><publisher>New York: Nature Publishing Group US</publisher><subject>631/114 ; 631/208 ; 631/67 ; 631/92 ; 692/699/67 ; Agriculture ; Animal Genetics and Genomics ; Animals ; Biomedical and Life Sciences ; Biomedicine ; Cancer ; Cancer Research ; Carcinogenesis - genetics ; Carcinogens ; Carcinogens - toxicity ; Chemicals ; Cobalt ; Cocarcinogens ; Deoxyribonucleic acid ; DNA ; DNA Mutational Analysis ; Drinking water ; Environmental Pollutants - toxicity ; Epidemiology ; Female ; Gene Function ; Gene mutations ; Genetic aspects ; Genome ; Genomes ; Genomics ; Health aspects ; Health risks ; Human Genetics ; Human populations ; Humans ; Liver ; Male ; Methods ; Mice ; Mutation ; Mutation Rate ; Oncology, Experimental ; Pollutants ; Propane - analogs & derivatives ; Propane - toxicity ; Public health ; Risk factors ; Signatures ; Species Specificity ; Toxicology ; Trichloropropane ; Tumorigenesis ; Tumors ; Vinylidene ; Vinylidene chloride ; Water pollution</subject><ispartof>Nature genetics, 2020-11, Vol.52 (11), p.1189-1197</ispartof><rights>The Author(s), under exclusive licence to Springer Nature America, Inc. 2020</rights><rights>COPYRIGHT 2020 Nature Publishing Group</rights><rights>Copyright Nature Publishing Group Nov 2020</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c671t-dba29c2ea2d76257e3e87a3dfd8ad8cadbe8769b592ef04fc524afa04223ae0c3</citedby><cites>FETCH-LOGICAL-c671t-dba29c2ea2d76257e3e87a3dfd8ad8cadbe8769b592ef04fc524afa04223ae0c3</cites><orcidid>0000-0001-6549-7861 ; 0000-0003-3596-4515 ; 0000-0002-3921-0510 ; 0000-0001-9490-0306 ; 0000-0001-5688-4915</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1038/s41588-020-0692-4$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1038/s41588-020-0692-4$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>230,314,780,784,885,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32989322$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Riva, Laura</creatorcontrib><creatorcontrib>Pandiri, Arun R.</creatorcontrib><creatorcontrib>Li, Yun Rose</creatorcontrib><creatorcontrib>Droop, Alastair</creatorcontrib><creatorcontrib>Hewinson, James</creatorcontrib><creatorcontrib>Quail, Michael A.</creatorcontrib><creatorcontrib>Iyer, Vivek</creatorcontrib><creatorcontrib>Shepherd, Rebecca</creatorcontrib><creatorcontrib>Herbert, Ronald A.</creatorcontrib><creatorcontrib>Campbell, Peter J.</creatorcontrib><creatorcontrib>Sills, Robert C.</creatorcontrib><creatorcontrib>Alexandrov, Ludmil B.</creatorcontrib><creatorcontrib>Balmain, Allan</creatorcontrib><creatorcontrib>Adams, David J.</creatorcontrib><title>The mutational signature profile of known and suspected human carcinogens in mice</title><title>Nature genetics</title><addtitle>Nat Genet</addtitle><addtitle>Nat Genet</addtitle><description>Epidemiological studies have identified many environmental agents that appear to significantly increase cancer risk in human populations. By analyzing tumor genomes from mice chronically exposed to 1 of 20 known or suspected human carcinogens, we reveal that most agents do not generate distinct mutational signatures or increase mutation burden, with most mutations, including driver mutations, resulting from tissue-specific endogenous processes. We identify signatures resulting from exposure to cobalt and vinylidene chloride and link distinct human signatures (SBS19 and SBS42) with 1,2,3-trichloropropane, a haloalkane and pollutant of drinking water, and find these and other signatures in human tumor genomes. We define the cross-species genomic landscape of tumors induced by an important compendium of agents with relevance to human health.
A genomic analysis of tumors in mice caused by known or suspected carcinogens shows that most carcinogens do not generate distinct mutational signatures.</description><subject>631/114</subject><subject>631/208</subject><subject>631/67</subject><subject>631/92</subject><subject>692/699/67</subject><subject>Agriculture</subject><subject>Animal Genetics and Genomics</subject><subject>Animals</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Cancer</subject><subject>Cancer Research</subject><subject>Carcinogenesis - genetics</subject><subject>Carcinogens</subject><subject>Carcinogens - toxicity</subject><subject>Chemicals</subject><subject>Cobalt</subject><subject>Cocarcinogens</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA Mutational Analysis</subject><subject>Drinking water</subject><subject>Environmental Pollutants - toxicity</subject><subject>Epidemiology</subject><subject>Female</subject><subject>Gene 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subjects | 631/114 631/208 631/67 631/92 692/699/67 Agriculture Animal Genetics and Genomics Animals Biomedical and Life Sciences Biomedicine Cancer Cancer Research Carcinogenesis - genetics Carcinogens Carcinogens - toxicity Chemicals Cobalt Cocarcinogens Deoxyribonucleic acid DNA DNA Mutational Analysis Drinking water Environmental Pollutants - toxicity Epidemiology Female Gene Function Gene mutations Genetic aspects Genome Genomes Genomics Health aspects Health risks Human Genetics Human populations Humans Liver Male Methods Mice Mutation Mutation Rate Oncology, Experimental Pollutants Propane - analogs & derivatives Propane - toxicity Public health Risk factors Signatures Species Specificity Toxicology Trichloropropane Tumorigenesis Tumors Vinylidene Vinylidene chloride Water pollution |
title | The mutational signature profile of known and suspected human carcinogens in mice |
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