The effects of cosolutes and crowding on the kinetics of protein condensate formation based on liquid–liquid phase separation: a pressure-jump relaxation study
Biomolecular assembly processes based on liquid–liquid phase separation (LLPS) are ubiquitous in the biological cell. To fully understand the role of LLPS in biological self-assembly, it is necessary to characterize also their kinetics of formation and dissolution. Here, we introduce the pressure-ju...
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description | Biomolecular assembly processes based on liquid–liquid phase separation (LLPS) are ubiquitous in the biological cell. To fully understand the role of LLPS in biological self-assembly, it is necessary to characterize also their kinetics of formation and dissolution. Here, we introduce the pressure-jump relaxation technique in concert with UV/Vis and FTIR spectroscopy as well as light microscopy to characterize the evolution of LLPS formation and dissolution in a time-dependent manner. As a model system undergoing LLPS we used the globular eye-lens protein γD-crystallin. As cosolutes and macromolecular crowding are known to affect the stability and dynamics of biomolecular condensates in cellulo, we extended our kinetic study by addressing also the impact of urea, the deep-sea osmolyte trimethylamine-
N
-oxide (TMAO) and a crowding agent on the transformation kinetics of the LLPS system. As a prerequisite for the kinetic studies, the phase diagram of γD-crystallin at the different solution conditions also had to be determined. The formation of the droplet phase was found to be a very rapid process and can be switched on and off on the 1–4 s timescale. Theoretical treatment using the Johnson–Mehl–Avrami–Kolmogorov model indicates that the LLPS proceeds via a diffusion-limited nucleation and growth mechanism at subcritical protein concentrations, a scenario which is also expected to prevail within biologically relevant crowded systems. Compared to the marked effect the cosolutes take on the stability of the LLPS region, their effect at biologically relevant concentrations on the phase transformation kinetics is very small, which might be a particular advantage in the cellular context, as a fast switching capability of the transition should not be compromised by the presence of cellular cosolutes. |
doi_str_mv | 10.1038/s41598-020-74271-x |
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N
-oxide (TMAO) and a crowding agent on the transformation kinetics of the LLPS system. As a prerequisite for the kinetic studies, the phase diagram of γD-crystallin at the different solution conditions also had to be determined. The formation of the droplet phase was found to be a very rapid process and can be switched on and off on the 1–4 s timescale. Theoretical treatment using the Johnson–Mehl–Avrami–Kolmogorov model indicates that the LLPS proceeds via a diffusion-limited nucleation and growth mechanism at subcritical protein concentrations, a scenario which is also expected to prevail within biologically relevant crowded systems. Compared to the marked effect the cosolutes take on the stability of the LLPS region, their effect at biologically relevant concentrations on the phase transformation kinetics is very small, which might be a particular advantage in the cellular context, as a fast switching capability of the transition should not be compromised by the presence of cellular cosolutes.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-020-74271-x</identifier><identifier>PMID: 33057154</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/57 ; 639/638 ; Humanities and Social Sciences ; Kinetics ; Liquid-Liquid Extraction ; multidisciplinary ; Protein Conformation ; Proteins - chemistry ; Proteins - isolation & purification ; Science ; Science (multidisciplinary) ; Spectroscopy, Fourier Transform Infrared</subject><ispartof>Scientific reports, 2020-10, Vol.10 (1), p.17245-17245, Article 17245</ispartof><rights>The Author(s) 2020</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c549t-2d4b8ae662895be73b19409dddf618c7382abad13bc5e557065d348de2d8671b3</citedby><cites>FETCH-LOGICAL-c549t-2d4b8ae662895be73b19409dddf618c7382abad13bc5e557065d348de2d8671b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7566631/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7566631/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,27901,27902,41096,42165,51551,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33057154$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Cinar, Hasan</creatorcontrib><creatorcontrib>Winter, Roland</creatorcontrib><title>The effects of cosolutes and crowding on the kinetics of protein condensate formation based on liquid–liquid phase separation: a pressure-jump relaxation study</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>Biomolecular assembly processes based on liquid–liquid phase separation (LLPS) are ubiquitous in the biological cell. To fully understand the role of LLPS in biological self-assembly, it is necessary to characterize also their kinetics of formation and dissolution. Here, we introduce the pressure-jump relaxation technique in concert with UV/Vis and FTIR spectroscopy as well as light microscopy to characterize the evolution of LLPS formation and dissolution in a time-dependent manner. As a model system undergoing LLPS we used the globular eye-lens protein γD-crystallin. As cosolutes and macromolecular crowding are known to affect the stability and dynamics of biomolecular condensates in cellulo, we extended our kinetic study by addressing also the impact of urea, the deep-sea osmolyte trimethylamine-
N
-oxide (TMAO) and a crowding agent on the transformation kinetics of the LLPS system. As a prerequisite for the kinetic studies, the phase diagram of γD-crystallin at the different solution conditions also had to be determined. The formation of the droplet phase was found to be a very rapid process and can be switched on and off on the 1–4 s timescale. Theoretical treatment using the Johnson–Mehl–Avrami–Kolmogorov model indicates that the LLPS proceeds via a diffusion-limited nucleation and growth mechanism at subcritical protein concentrations, a scenario which is also expected to prevail within biologically relevant crowded systems. Compared to the marked effect the cosolutes take on the stability of the LLPS region, their effect at biologically relevant concentrations on the phase transformation kinetics is very small, which might be a particular advantage in the cellular context, as a fast switching capability of the transition should not be compromised by the presence of cellular cosolutes.</description><subject>631/57</subject><subject>639/638</subject><subject>Humanities and Social Sciences</subject><subject>Kinetics</subject><subject>Liquid-Liquid Extraction</subject><subject>multidisciplinary</subject><subject>Protein Conformation</subject><subject>Proteins - chemistry</subject><subject>Proteins - isolation & purification</subject><subject>Science</subject><subject>Science (multidisciplinary)</subject><subject>Spectroscopy, Fourier Transform Infrared</subject><issn>2045-2322</issn><issn>2045-2322</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><recordid>eNp9kU1u1TAUhSMEolXpBhggD5kE_Js4DJBQxZ9UiUkZW058854fiZ36h77O2ENX0K2xEtyXUpUJnvhK5zvH1j1V9ZLgNwQz-TZyIjpZY4rrltOW1Psn1THFXNSUUfr00XxUnca4w-UI2nHSPa-OGMOiJYIfV7cXW0AwjjCkiPyIBh_9lBNEpJ1BQ_BXxroN8g6lAv6wDpIdDuQSfALrisMZcFEnQKMPs062wL2OYO5ck73M1vz-dbMOaNkWBUVYdDiQ75AuSRBjDlDv8rygAJPerykxZXP9ono26inC6f19Un3_9PHi7Et9_u3z17MP5_UgeJdqangvNTQNlZ3ooWU96TjujDFjQ-TQMkl1rw1h_SBAiBY3wjAuDVAjm5b07KR6v-YuuZ_BDOBS0JNagp11uFZeW_Wv4uxWbfxP1YqmaRgpAa_vA4K_zBCTmm0cYJq0A5-jolwQ2eAWy4LSFS0LjjHA-PAMwequXrXWq0q96lCv2hfTq8cffLD8LbMAbAVikdwGgtr5HFxZ2v9i_wAyYLde</recordid><startdate>20201014</startdate><enddate>20201014</enddate><creator>Cinar, Hasan</creator><creator>Winter, Roland</creator><general>Nature Publishing Group UK</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20201014</creationdate><title>The effects of cosolutes and crowding on the kinetics of protein condensate formation based on liquid–liquid phase separation: a pressure-jump relaxation study</title><author>Cinar, Hasan ; Winter, Roland</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c549t-2d4b8ae662895be73b19409dddf618c7382abad13bc5e557065d348de2d8671b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>631/57</topic><topic>639/638</topic><topic>Humanities and Social Sciences</topic><topic>Kinetics</topic><topic>Liquid-Liquid Extraction</topic><topic>multidisciplinary</topic><topic>Protein Conformation</topic><topic>Proteins - chemistry</topic><topic>Proteins - isolation & purification</topic><topic>Science</topic><topic>Science (multidisciplinary)</topic><topic>Spectroscopy, Fourier Transform Infrared</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Cinar, Hasan</creatorcontrib><creatorcontrib>Winter, Roland</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Cinar, Hasan</au><au>Winter, Roland</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The effects of cosolutes and crowding on the kinetics of protein condensate formation based on liquid–liquid phase separation: a pressure-jump relaxation study</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2020-10-14</date><risdate>2020</risdate><volume>10</volume><issue>1</issue><spage>17245</spage><epage>17245</epage><pages>17245-17245</pages><artnum>17245</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>Biomolecular assembly processes based on liquid–liquid phase separation (LLPS) are ubiquitous in the biological cell. To fully understand the role of LLPS in biological self-assembly, it is necessary to characterize also their kinetics of formation and dissolution. Here, we introduce the pressure-jump relaxation technique in concert with UV/Vis and FTIR spectroscopy as well as light microscopy to characterize the evolution of LLPS formation and dissolution in a time-dependent manner. As a model system undergoing LLPS we used the globular eye-lens protein γD-crystallin. As cosolutes and macromolecular crowding are known to affect the stability and dynamics of biomolecular condensates in cellulo, we extended our kinetic study by addressing also the impact of urea, the deep-sea osmolyte trimethylamine-
N
-oxide (TMAO) and a crowding agent on the transformation kinetics of the LLPS system. As a prerequisite for the kinetic studies, the phase diagram of γD-crystallin at the different solution conditions also had to be determined. The formation of the droplet phase was found to be a very rapid process and can be switched on and off on the 1–4 s timescale. Theoretical treatment using the Johnson–Mehl–Avrami–Kolmogorov model indicates that the LLPS proceeds via a diffusion-limited nucleation and growth mechanism at subcritical protein concentrations, a scenario which is also expected to prevail within biologically relevant crowded systems. Compared to the marked effect the cosolutes take on the stability of the LLPS region, their effect at biologically relevant concentrations on the phase transformation kinetics is very small, which might be a particular advantage in the cellular context, as a fast switching capability of the transition should not be compromised by the presence of cellular cosolutes.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>33057154</pmid><doi>10.1038/s41598-020-74271-x</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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subjects | 631/57 639/638 Humanities and Social Sciences Kinetics Liquid-Liquid Extraction multidisciplinary Protein Conformation Proteins - chemistry Proteins - isolation & purification Science Science (multidisciplinary) Spectroscopy, Fourier Transform Infrared |
title | The effects of cosolutes and crowding on the kinetics of protein condensate formation based on liquid–liquid phase separation: a pressure-jump relaxation study |
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