Genetic diversity and evolutionary history of Korean isolates of severe fever with thrombocytopenia syndrome virus from 2013–2016
Severe fever with thrombocytopenia syndrome (SFTS) is caused by SFTS virus (SFTSV). Although SFTS originated in China, it is an emerging infectious disease with prevalence confirmed in Japan, Korea, and Vietnam. The full-length genomes of 51 Korean SFTSV isolates from 2013 to 2016 were sequenced, an...
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| Veröffentlicht in: | Archives of virology 2020-11, Vol.165 (11), p.2599-2603 |
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| creator | Yun, Mi-ran Ryou, Jungsang Choi, Wooyoung Lee, Joo-Yeon Park, Sun-Whan Kim, Dae-Won |
| description | Severe fever with thrombocytopenia syndrome (SFTS) is caused by SFTS virus (SFTSV). Although SFTS originated in China, it is an emerging infectious disease with prevalence confirmed in Japan, Korea, and Vietnam. The full-length genomes of 51 Korean SFTSV isolates from 2013 to 2016 were sequenced, and the sequences were deposited into a public database (GenBank) and analyzed to elucidate the phylogeny and evolution of the virus. Although most of the Korean SFTSV isolates were closely related to previously reported Japanese isolates, some were closely related to previously reported Chinese isolates. We identified one Korean strain that appears to have resulted from multiple inter-lineage reassortments. Several nucleotide and amino acid variations specific to the Korean isolates were identified. Future studies should focus on how these variations affect virus pathogenicity and evolution. |
| doi_str_mv | 10.1007/s00705-020-04733-0 |
| format | Article |
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Although SFTS originated in China, it is an emerging infectious disease with prevalence confirmed in Japan, Korea, and Vietnam. The full-length genomes of 51 Korean SFTSV isolates from 2013 to 2016 were sequenced, and the sequences were deposited into a public database (GenBank) and analyzed to elucidate the phylogeny and evolution of the virus. Although most of the Korean SFTSV isolates were closely related to previously reported Japanese isolates, some were closely related to previously reported Chinese isolates. We identified one Korean strain that appears to have resulted from multiple inter-lineage reassortments. Several nucleotide and amino acid variations specific to the Korean isolates were identified. Future studies should focus on how these variations affect virus pathogenicity and evolution.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-020-04733-0</identifier><identifier>PMID: 32699980</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Base Sequence ; Biomedical and Life Sciences ; Biomedicine ; Brief Report ; Bunyaviridae Infections - virology ; China ; Evolution, Molecular ; Genetic Variation ; Genotype ; Humans ; Infectious Diseases ; Japan ; Medical Microbiology ; Phlebotomus Fever - virology ; Phlebovirus - classification ; Phlebovirus - genetics ; Phlebovirus - isolation & purification ; Phylogeny ; Republic of Korea ; Sequence Analysis, DNA ; Thrombocytopenia - virology ; Virology</subject><ispartof>Archives of virology, 2020-11, Vol.165 (11), p.2599-2603</ispartof><rights>The Author(s) 2020. corrected publication 2020</rights><rights>The Author(s) 2020, corrected publication 2020</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c446t-918b7642bd39e4da5df262158f433e0ee1af27c45256ebf8ab61977258d0ff043</citedby><cites>FETCH-LOGICAL-c446t-918b7642bd39e4da5df262158f433e0ee1af27c45256ebf8ab61977258d0ff043</cites><orcidid>0000-0002-0393-6504 ; 0000-0002-3316-0065</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-020-04733-0$$EPDF$$P50$$Gspringer$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-020-04733-0$$EHTML$$P50$$Gspringer$$Hfree_for_read</linktohtml><link.rule.ids>230,314,778,782,883,27911,27912,41475,42544,51306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32699980$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yun, Mi-ran</creatorcontrib><creatorcontrib>Ryou, Jungsang</creatorcontrib><creatorcontrib>Choi, Wooyoung</creatorcontrib><creatorcontrib>Lee, Joo-Yeon</creatorcontrib><creatorcontrib>Park, Sun-Whan</creatorcontrib><creatorcontrib>Kim, Dae-Won</creatorcontrib><title>Genetic diversity and evolutionary history of Korean isolates of severe fever with thrombocytopenia syndrome virus from 2013–2016</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>Severe fever with thrombocytopenia syndrome (SFTS) is caused by SFTS virus (SFTSV). Although SFTS originated in China, it is an emerging infectious disease with prevalence confirmed in Japan, Korea, and Vietnam. The full-length genomes of 51 Korean SFTSV isolates from 2013 to 2016 were sequenced, and the sequences were deposited into a public database (GenBank) and analyzed to elucidate the phylogeny and evolution of the virus. Although most of the Korean SFTSV isolates were closely related to previously reported Japanese isolates, some were closely related to previously reported Chinese isolates. We identified one Korean strain that appears to have resulted from multiple inter-lineage reassortments. Several nucleotide and amino acid variations specific to the Korean isolates were identified. Future studies should focus on how these variations affect virus pathogenicity and evolution.</description><subject>Base Sequence</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Brief Report</subject><subject>Bunyaviridae Infections - virology</subject><subject>China</subject><subject>Evolution, Molecular</subject><subject>Genetic Variation</subject><subject>Genotype</subject><subject>Humans</subject><subject>Infectious Diseases</subject><subject>Japan</subject><subject>Medical Microbiology</subject><subject>Phlebotomus Fever - virology</subject><subject>Phlebovirus - classification</subject><subject>Phlebovirus - genetics</subject><subject>Phlebovirus - isolation & purification</subject><subject>Phylogeny</subject><subject>Republic of Korea</subject><subject>Sequence Analysis, DNA</subject><subject>Thrombocytopenia - virology</subject><subject>Virology</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><recordid>eNp9UUtuFDEUtBCIDIELsEBesml4_nb3BglFEBCRsknWlrv7OeOoxx5s96DZIXEEbshJ8DAhIhs2LqteVflThLxk8IYBtG9zXUA1wKEB2QrRwCOyYlLwpmv77jFZgQDZdBq6E_Is51uASgj1lJwIrvu-72BFfpxjwOJHOvkdpuzLntowUdzFeSk-Bpv2dO1ziRWjo19iQhuoz3G2BfOByliNSN0B6Ddf1rSsU9wMcdyXuMXgLc37MFUK6c6nJVNX95QDE7--_6ygn5Mnzs4ZX9zhKbn--OHq7FNzcXn--ez9RTNKqUvTs25oteTDJHqUk1WT45oz1TkpBAIis463o1RcaRxcZwfN-rblqpvAOZDilLw75m6XYYPTiKEkO5tt8pv6TBOtNw8nwa_NTdyZVsm216wGvL4LSPHrgrmYjc8jzrMNGJdsuORaCS16VaX8KB1TzDmhuz-GgTm0Z47tmdqe-dOegWp69e8F7y1_66oCcRTkOgo3mMxtXFKon_a_2N_-bKlk</recordid><startdate>20201101</startdate><enddate>20201101</enddate><creator>Yun, Mi-ran</creator><creator>Ryou, Jungsang</creator><creator>Choi, Wooyoung</creator><creator>Lee, Joo-Yeon</creator><creator>Park, Sun-Whan</creator><creator>Kim, Dae-Won</creator><general>Springer Vienna</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-0393-6504</orcidid><orcidid>https://orcid.org/0000-0002-3316-0065</orcidid></search><sort><creationdate>20201101</creationdate><title>Genetic diversity and evolutionary history of Korean isolates of severe fever with thrombocytopenia syndrome virus from 2013–2016</title><author>Yun, Mi-ran ; Ryou, Jungsang ; Choi, Wooyoung ; Lee, Joo-Yeon ; Park, Sun-Whan ; Kim, Dae-Won</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c446t-918b7642bd39e4da5df262158f433e0ee1af27c45256ebf8ab61977258d0ff043</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Base Sequence</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Brief Report</topic><topic>Bunyaviridae Infections - virology</topic><topic>China</topic><topic>Evolution, Molecular</topic><topic>Genetic Variation</topic><topic>Genotype</topic><topic>Humans</topic><topic>Infectious Diseases</topic><topic>Japan</topic><topic>Medical Microbiology</topic><topic>Phlebotomus Fever - virology</topic><topic>Phlebovirus - classification</topic><topic>Phlebovirus - genetics</topic><topic>Phlebovirus - isolation & purification</topic><topic>Phylogeny</topic><topic>Republic of Korea</topic><topic>Sequence Analysis, DNA</topic><topic>Thrombocytopenia - virology</topic><topic>Virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yun, Mi-ran</creatorcontrib><creatorcontrib>Ryou, Jungsang</creatorcontrib><creatorcontrib>Choi, Wooyoung</creatorcontrib><creatorcontrib>Lee, Joo-Yeon</creatorcontrib><creatorcontrib>Park, Sun-Whan</creatorcontrib><creatorcontrib>Kim, Dae-Won</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yun, Mi-ran</au><au>Ryou, Jungsang</au><au>Choi, Wooyoung</au><au>Lee, Joo-Yeon</au><au>Park, Sun-Whan</au><au>Kim, Dae-Won</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic diversity and evolutionary history of Korean isolates of severe fever with thrombocytopenia syndrome virus from 2013–2016</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2020-11-01</date><risdate>2020</risdate><volume>165</volume><issue>11</issue><spage>2599</spage><epage>2603</epage><pages>2599-2603</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>Severe fever with thrombocytopenia syndrome (SFTS) is caused by SFTS virus (SFTSV). Although SFTS originated in China, it is an emerging infectious disease with prevalence confirmed in Japan, Korea, and Vietnam. The full-length genomes of 51 Korean SFTSV isolates from 2013 to 2016 were sequenced, and the sequences were deposited into a public database (GenBank) and analyzed to elucidate the phylogeny and evolution of the virus. Although most of the Korean SFTSV isolates were closely related to previously reported Japanese isolates, some were closely related to previously reported Chinese isolates. We identified one Korean strain that appears to have resulted from multiple inter-lineage reassortments. Several nucleotide and amino acid variations specific to the Korean isolates were identified. 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| subjects | Base Sequence Biomedical and Life Sciences Biomedicine Brief Report Bunyaviridae Infections - virology China Evolution, Molecular Genetic Variation Genotype Humans Infectious Diseases Japan Medical Microbiology Phlebotomus Fever - virology Phlebovirus - classification Phlebovirus - genetics Phlebovirus - isolation & purification Phylogeny Republic of Korea Sequence Analysis, DNA Thrombocytopenia - virology Virology |
| title | Genetic diversity and evolutionary history of Korean isolates of severe fever with thrombocytopenia syndrome virus from 2013–2016 |
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