Susceptibility of Clinical Isolates of Escherichia coli to Fosfomycin as Measured by Four In Vitro Testing Methods
Clinical isolates of ( = 554) were tested against fosfomycin using agar dilution, disk diffusion, and Etest. Agar dilution (reference method) identified few isolates with fosfomycin MICs of 64 ( = 3), 128 ( = 4), and ≥256 μg/ml ( = 2). Applying CLSI (M100, 2020) and EUCAST (v. 10.0, 2020) breakpoint...
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creator | Karlowsky, James A Lagacé-Wiens, Philippe R S Laing, Nancy M Baxter, Melanie R Adam, Heather J Zhanel, George G |
description | Clinical isolates of
(
= 554) were tested against fosfomycin using agar dilution, disk diffusion, and Etest. Agar dilution (reference method) identified few isolates with fosfomycin MICs of 64 (
= 3), 128 (
= 4), and ≥256 μg/ml (
= 2). Applying CLSI (M100, 2020) and EUCAST (v. 10.0, 2020) breakpoints, 98.9% and 98.4% (agar dilution), 99.3% and 99.1% (disk diffusion), and 99.1% and 98.9% (Etest) of isolates were fosfomycin susceptible, respectively. Essential agreement (agar dilution versus Etest) was low (40.8%); 59.3% (131/221) of isolates with agar dilution MICs of 2 to 128 μg/ml tested 2 to 4 doubling dilutions lower by Etest. Applying CLSI breakpoints, categorical agreement was >99% for both disk diffusion and Etest; no major errors (MEs) or very major errors (VMEs) were identified, and rates of minor errors (mEs) were 99% and no MEs for both disk diffusion and Etest; however, VMEs occurred at unacceptable rates of 44.4% (disk diffusion) and 33.3% (Etest). All isolates with agar dilution MICs of ≥32 μg/ml (
= 12) and a subset of isolates with MICs of ≤16 μg/ml (
= 49) were also tested using the Vitek 2 AST-N391 card and generated fosfomycin MICs 1 to ≥3 doubling dilutions lower than agar dilution for 11/12 isolates with agar dilution MICs of ≥32 μg/ml. We conclude that performing fosfomycin disk diffusion or Etest on urinary isolates of
and interpreting results using CLSI breakpoints reliably identified fosfomycin-susceptible isolates regardless of differences in endpoint reading criteria. EUCAST breakpoints generated excessive rates of VMEs for our isolate collection of high fosfomycin susceptibility. |
doi_str_mv | 10.1128/JCM.01306-20 |
format | Article |
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(
= 554) were tested against fosfomycin using agar dilution, disk diffusion, and Etest. Agar dilution (reference method) identified few isolates with fosfomycin MICs of 64 (
= 3), 128 (
= 4), and ≥256 μg/ml (
= 2). Applying CLSI (M100, 2020) and EUCAST (v. 10.0, 2020) breakpoints, 98.9% and 98.4% (agar dilution), 99.3% and 99.1% (disk diffusion), and 99.1% and 98.9% (Etest) of isolates were fosfomycin susceptible, respectively. Essential agreement (agar dilution versus Etest) was low (40.8%); 59.3% (131/221) of isolates with agar dilution MICs of 2 to 128 μg/ml tested 2 to 4 doubling dilutions lower by Etest. Applying CLSI breakpoints, categorical agreement was >99% for both disk diffusion and Etest; no major errors (MEs) or very major errors (VMEs) were identified, and rates of minor errors (mEs) were <1%. EUCAST breakpoints yielded categorical agreements of >99% and no MEs for both disk diffusion and Etest; however, VMEs occurred at unacceptable rates of 44.4% (disk diffusion) and 33.3% (Etest). All isolates with agar dilution MICs of ≥32 μg/ml (
= 12) and a subset of isolates with MICs of ≤16 μg/ml (
= 49) were also tested using the Vitek 2 AST-N391 card and generated fosfomycin MICs 1 to ≥3 doubling dilutions lower than agar dilution for 11/12 isolates with agar dilution MICs of ≥32 μg/ml. We conclude that performing fosfomycin disk diffusion or Etest on urinary isolates of
and interpreting results using CLSI breakpoints reliably identified fosfomycin-susceptible isolates regardless of differences in endpoint reading criteria. EUCAST breakpoints generated excessive rates of VMEs for our isolate collection of high fosfomycin susceptibility.</description><identifier>ISSN: 0095-1137</identifier><identifier>EISSN: 1098-660X</identifier><identifier>DOI: 10.1128/JCM.01306-20</identifier><identifier>PMID: 32817224</identifier><language>eng</language><publisher>United States: American Society for Microbiology</publisher><subject>Bacteriology</subject><ispartof>Journal of clinical microbiology, 2020-09, Vol.58 (10)</ispartof><rights>Copyright © 2020 American Society for Microbiology.</rights><rights>Copyright © 2020 American Society for Microbiology. 2020 American Society for Microbiology</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c384t-9fa98a0f6d3d16e438593019b7a7e75f5aee6450535f9ca98f202641825b087e3</citedby><cites>FETCH-LOGICAL-c384t-9fa98a0f6d3d16e438593019b7a7e75f5aee6450535f9ca98f202641825b087e3</cites><orcidid>0000-0002-3238-0082</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7512169/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7512169/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,315,728,781,785,886,3189,27926,27927,53793,53795</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32817224$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Ledeboer, Nathan A.</contributor><creatorcontrib>Karlowsky, James A</creatorcontrib><creatorcontrib>Lagacé-Wiens, Philippe R S</creatorcontrib><creatorcontrib>Laing, Nancy M</creatorcontrib><creatorcontrib>Baxter, Melanie R</creatorcontrib><creatorcontrib>Adam, Heather J</creatorcontrib><creatorcontrib>Zhanel, George G</creatorcontrib><title>Susceptibility of Clinical Isolates of Escherichia coli to Fosfomycin as Measured by Four In Vitro Testing Methods</title><title>Journal of clinical microbiology</title><addtitle>J Clin Microbiol</addtitle><description>Clinical isolates of
(
= 554) were tested against fosfomycin using agar dilution, disk diffusion, and Etest. Agar dilution (reference method) identified few isolates with fosfomycin MICs of 64 (
= 3), 128 (
= 4), and ≥256 μg/ml (
= 2). Applying CLSI (M100, 2020) and EUCAST (v. 10.0, 2020) breakpoints, 98.9% and 98.4% (agar dilution), 99.3% and 99.1% (disk diffusion), and 99.1% and 98.9% (Etest) of isolates were fosfomycin susceptible, respectively. Essential agreement (agar dilution versus Etest) was low (40.8%); 59.3% (131/221) of isolates with agar dilution MICs of 2 to 128 μg/ml tested 2 to 4 doubling dilutions lower by Etest. Applying CLSI breakpoints, categorical agreement was >99% for both disk diffusion and Etest; no major errors (MEs) or very major errors (VMEs) were identified, and rates of minor errors (mEs) were <1%. EUCAST breakpoints yielded categorical agreements of >99% and no MEs for both disk diffusion and Etest; however, VMEs occurred at unacceptable rates of 44.4% (disk diffusion) and 33.3% (Etest). All isolates with agar dilution MICs of ≥32 μg/ml (
= 12) and a subset of isolates with MICs of ≤16 μg/ml (
= 49) were also tested using the Vitek 2 AST-N391 card and generated fosfomycin MICs 1 to ≥3 doubling dilutions lower than agar dilution for 11/12 isolates with agar dilution MICs of ≥32 μg/ml. We conclude that performing fosfomycin disk diffusion or Etest on urinary isolates of
and interpreting results using CLSI breakpoints reliably identified fosfomycin-susceptible isolates regardless of differences in endpoint reading criteria. EUCAST breakpoints generated excessive rates of VMEs for our isolate collection of high fosfomycin susceptibility.</description><subject>Bacteriology</subject><issn>0095-1137</issn><issn>1098-660X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNpVkTtPHDEUha0oEWyALjVymSJDrp8z0yBFKyAbgSiAKJ3l8diskXe8sT2R9t9jwkNJdaV7Pp37OAh9InBCCO2-_lhenQBhIBsK79CCQN81UsKv92gB0IuGENbuo485PwAQzoXYQ_uMdqSllC9QupmzsdviBx982eHo8DL4yRsd8CrHoIvNT82zbNY2ebP2GpsYPC4Rn8fs4mZn_IR1xldW5znZEQ-7qswJryb805cU8a3NxU_3lSjrOOZD9MHpkO3RSz1Ad-dnt8vvzeX1xWr57bIxrOOl6Z3uOw1Ojmwk0nLWiZ4B6YdWt7YVTmhrJRcgmHC9qayjQCUnHRUDdK1lB-j02Xc7Dxs7GjuVpIPaJr_Raaei9up_ZfJrdR__qFYQSmRfDT6_GKT4e65HqI2vzwpBTzbOWVHOJAcqCKvol2fUpJhzsu5tDAH1FJOqMam_MSkKFT_-d7U3-DUX9giTeI68</recordid><startdate>20200922</startdate><enddate>20200922</enddate><creator>Karlowsky, James A</creator><creator>Lagacé-Wiens, Philippe R S</creator><creator>Laing, Nancy M</creator><creator>Baxter, Melanie R</creator><creator>Adam, Heather J</creator><creator>Zhanel, George G</creator><general>American Society for Microbiology</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-3238-0082</orcidid></search><sort><creationdate>20200922</creationdate><title>Susceptibility of Clinical Isolates of Escherichia coli to Fosfomycin as Measured by Four In Vitro Testing Methods</title><author>Karlowsky, James A ; Lagacé-Wiens, Philippe R S ; Laing, Nancy M ; Baxter, Melanie R ; Adam, Heather J ; Zhanel, George G</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c384t-9fa98a0f6d3d16e438593019b7a7e75f5aee6450535f9ca98f202641825b087e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Bacteriology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Karlowsky, James A</creatorcontrib><creatorcontrib>Lagacé-Wiens, Philippe R S</creatorcontrib><creatorcontrib>Laing, Nancy M</creatorcontrib><creatorcontrib>Baxter, Melanie R</creatorcontrib><creatorcontrib>Adam, Heather J</creatorcontrib><creatorcontrib>Zhanel, George G</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of clinical microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Karlowsky, James A</au><au>Lagacé-Wiens, Philippe R S</au><au>Laing, Nancy M</au><au>Baxter, Melanie R</au><au>Adam, Heather J</au><au>Zhanel, George G</au><au>Ledeboer, Nathan A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Susceptibility of Clinical Isolates of Escherichia coli to Fosfomycin as Measured by Four In Vitro Testing Methods</atitle><jtitle>Journal of clinical microbiology</jtitle><addtitle>J Clin Microbiol</addtitle><date>2020-09-22</date><risdate>2020</risdate><volume>58</volume><issue>10</issue><issn>0095-1137</issn><eissn>1098-660X</eissn><abstract>Clinical isolates of
(
= 554) were tested against fosfomycin using agar dilution, disk diffusion, and Etest. Agar dilution (reference method) identified few isolates with fosfomycin MICs of 64 (
= 3), 128 (
= 4), and ≥256 μg/ml (
= 2). Applying CLSI (M100, 2020) and EUCAST (v. 10.0, 2020) breakpoints, 98.9% and 98.4% (agar dilution), 99.3% and 99.1% (disk diffusion), and 99.1% and 98.9% (Etest) of isolates were fosfomycin susceptible, respectively. Essential agreement (agar dilution versus Etest) was low (40.8%); 59.3% (131/221) of isolates with agar dilution MICs of 2 to 128 μg/ml tested 2 to 4 doubling dilutions lower by Etest. Applying CLSI breakpoints, categorical agreement was >99% for both disk diffusion and Etest; no major errors (MEs) or very major errors (VMEs) were identified, and rates of minor errors (mEs) were <1%. EUCAST breakpoints yielded categorical agreements of >99% and no MEs for both disk diffusion and Etest; however, VMEs occurred at unacceptable rates of 44.4% (disk diffusion) and 33.3% (Etest). All isolates with agar dilution MICs of ≥32 μg/ml (
= 12) and a subset of isolates with MICs of ≤16 μg/ml (
= 49) were also tested using the Vitek 2 AST-N391 card and generated fosfomycin MICs 1 to ≥3 doubling dilutions lower than agar dilution for 11/12 isolates with agar dilution MICs of ≥32 μg/ml. We conclude that performing fosfomycin disk diffusion or Etest on urinary isolates of
and interpreting results using CLSI breakpoints reliably identified fosfomycin-susceptible isolates regardless of differences in endpoint reading criteria. EUCAST breakpoints generated excessive rates of VMEs for our isolate collection of high fosfomycin susceptibility.</abstract><cop>United States</cop><pub>American Society for Microbiology</pub><pmid>32817224</pmid><doi>10.1128/JCM.01306-20</doi><orcidid>https://orcid.org/0000-0002-3238-0082</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Bacteriology |
title | Susceptibility of Clinical Isolates of Escherichia coli to Fosfomycin as Measured by Four In Vitro Testing Methods |
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