The complete chloroplast genome sequence of Sorbus amabilis (Rosaceae)
Sorbus amabilis Cheng ex Yü, a small excellent ornamental tree species, is only distributed in Eastern China. In this study, we assembled and annotated the complete chloroplast (cp) genome of the species using the next-generation sequencing for the first time. The cp genome was 160,006 bp in size, c...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2020-07, Vol.5 (3), p.2184-2185 |
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| creator | Zhang, Xingwang Xie, Yanping Xiao, Shuping Wu, Xiaomin |
| description | Sorbus amabilis Cheng ex Yü, a small excellent ornamental tree species, is only distributed in Eastern China. In this study, we assembled and annotated the complete chloroplast (cp) genome of the species using the next-generation sequencing for the first time. The cp genome was 160,006 bp in size, consisting of two copies of invert repeat (IR) regions of 26,405 bp, one large single-copy (LSC) region of 87,870bp, and one small single-copy (SSC) region of 19,326 bp. The overall GC content of the genome was 36.55%. The genome was predicted to contain 128 genes, including 88 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis of 25 chloroplast genomes in Rosaceae indicated that S. amabilis is most closely related to S. commixta. These findings may provide useful information to the phylogeny of the genus Sorbus. |
| doi_str_mv | 10.1080/23802359.2020.1768951 |
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In this study, we assembled and annotated the complete chloroplast (cp) genome of the species using the next-generation sequencing for the first time. The cp genome was 160,006 bp in size, consisting of two copies of invert repeat (IR) regions of 26,405 bp, one large single-copy (LSC) region of 87,870bp, and one small single-copy (SSC) region of 19,326 bp. The overall GC content of the genome was 36.55%. The genome was predicted to contain 128 genes, including 88 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis of 25 chloroplast genomes in Rosaceae indicated that S. amabilis is most closely related to S. commixta. These findings may provide useful information to the phylogeny of the genus Sorbus.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2020.1768951</identifier><identifier>PMID: 33366963</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Chloroplast genome ; Chloroplasts ; Genomes ; Mitogenome Announcement ; Next-generation sequencing ; Nucleotide sequence ; phylogenetic analysis ; Phylogeny ; Rosaceae ; rRNA ; Sorbus ; Sorbus amabilis ; tRNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2020-07, Vol.5 (3), p.2184-2185</ispartof><rights>2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2020</rights><rights>2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 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Published by Informa UK Limited, trading as Taylor & Francis Group. 2020 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c510t-a1c8047cc89b3736bd9942e775fed7c25634f97e249e0d5721497fa59fbc8dad3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510610/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7510610/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2095,27481,27903,27904,53769,53771,59119,59120</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33366963$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Xingwang</creatorcontrib><creatorcontrib>Xie, Yanping</creatorcontrib><creatorcontrib>Xiao, Shuping</creatorcontrib><creatorcontrib>Wu, Xiaomin</creatorcontrib><title>The complete chloroplast genome sequence of Sorbus amabilis (Rosaceae)</title><title>Mitochondrial DNA. Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>Sorbus amabilis Cheng ex Yü, a small excellent ornamental tree species, is only distributed in Eastern China. In this study, we assembled and annotated the complete chloroplast (cp) genome of the species using the next-generation sequencing for the first time. The cp genome was 160,006 bp in size, consisting of two copies of invert repeat (IR) regions of 26,405 bp, one large single-copy (LSC) region of 87,870bp, and one small single-copy (SSC) region of 19,326 bp. The overall GC content of the genome was 36.55%. The genome was predicted to contain 128 genes, including 88 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis of 25 chloroplast genomes in Rosaceae indicated that S. amabilis is most closely related to S. commixta. These findings may provide useful information to the phylogeny of the genus Sorbus.</description><subject>Chloroplast genome</subject><subject>Chloroplasts</subject><subject>Genomes</subject><subject>Mitogenome Announcement</subject><subject>Next-generation sequencing</subject><subject>Nucleotide sequence</subject><subject>phylogenetic analysis</subject><subject>Phylogeny</subject><subject>Rosaceae</subject><subject>rRNA</subject><subject>Sorbus</subject><subject>Sorbus amabilis</subject><subject>tRNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9UctuFDEQtBCIRCGfABqJSzhs4sf4dUFEEYFIkSKFcLY8nvauV57xYs-A8vd42U2U5MDJrerqancVQu8JPiVY4TPKFKaM61OKaYWkUJqTV-hwiy-2jddP6gN0XMoaY0wEk1LLt-iAMSaEFuwQXd6toHFp2ESYarGKKadNtGVqljCmAZoCv2YYHTTJNz9S7ubS2MF2IYbSnNymYh1Y-PQOvfE2Fjjev0fo5-XXu4vvi-ubb1cX59cLxwmeFpY4hVvpnNIdk0x0vdYtBSm5h146ygVrvZZAWw2455KSVktvufadU73t2RG62un2ya7NJofB5nuTbDD_gJSXxuYpuAimqysZCA1OyBaU1JhQrDhT3GElaVe1Pu-0NnM3QO9gnLKNz0Sfd8awMsv028h6iyC4CpzsBXKqJpXJDKE4iNGOkOZiaCtZS6rPtFI_vqCu05zHapWhnFJOqNassviO5XIqJYN__AzBZhu8eQjebIM3--Dr3IenlzxOPcRcCV92hDD6lAf7J-XYm8ne17h9tqMLxbD_7_gLorW7NQ</recordid><startdate>20200702</startdate><enddate>20200702</enddate><creator>Zhang, Xingwang</creator><creator>Xie, Yanping</creator><creator>Xiao, Shuping</creator><creator>Wu, Xiaomin</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20200702</creationdate><title>The complete chloroplast genome sequence of Sorbus amabilis (Rosaceae)</title><author>Zhang, Xingwang ; 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| subjects | Chloroplast genome Chloroplasts Genomes Mitogenome Announcement Next-generation sequencing Nucleotide sequence phylogenetic analysis Phylogeny Rosaceae rRNA Sorbus Sorbus amabilis tRNA |
| title | The complete chloroplast genome sequence of Sorbus amabilis (Rosaceae) |
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