Natural variation and selection in GmSWEET39 affect soybean seed oil content
Soybean (Glycine max) is a major contributor to the world oilseed production. Its seed oil content has been increased through soybean domestication and improvement. However, the genes underlying the selection are largely unknown. The present contribution analyzed the expression patterns of genes in...
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| Veröffentlicht in: | The New phytologist 2020-02, Vol.225 (4), p.1651-1666 |
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| creator | Miao, Long Yang, Songnan Zhang, Kai He, Jianbo Wu, Chunhua Ren, Yanhua Gai, Junyi Li, Yan |
| description | Soybean (Glycine max) is a major contributor to the world oilseed production. Its seed oil content has been increased through soybean domestication and improvement. However, the genes underlying the selection are largely unknown.
The present contribution analyzed the expression patterns of genes in the seed oil quantitative trait loci with strong selective sweep signals, then used association, functional study and population genetics to reveal a sucrose efflux transporter gene, GmSWEET39, controlling soybean seed oil content and under selection.
GmSWEET39 is highly expressed in soybean seeds and encodes a plasma membrane-localized protein. Its expression level is positively correlated with soybean seed oil content. The variation in its promoter and coding sequence leads to different natural alleles of this gene. The GmSWEET39 allelic effects on total oil content were confirmed in the seeds of soybean recombinant inbred lines, transgenic Arabidopsis, and transgenic soybean hairy roots. The frequencies of its superior alleles increased from wild soybean to cultivated soybean, and are much higher in released soybean cultivars.
The findings herein suggest that the sequence variation in GmSWEET39 affects its relative expression and oil content in soybean seeds, and GmSWEET39 has been selected to increase seed oil content during soybean domestication and improvement. |
| doi_str_mv | 10.1111/nph.16250 |
| format | Article |
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The present contribution analyzed the expression patterns of genes in the seed oil quantitative trait loci with strong selective sweep signals, then used association, functional study and population genetics to reveal a sucrose efflux transporter gene, GmSWEET39, controlling soybean seed oil content and under selection.
GmSWEET39 is highly expressed in soybean seeds and encodes a plasma membrane-localized protein. Its expression level is positively correlated with soybean seed oil content. The variation in its promoter and coding sequence leads to different natural alleles of this gene. The GmSWEET39 allelic effects on total oil content were confirmed in the seeds of soybean recombinant inbred lines, transgenic Arabidopsis, and transgenic soybean hairy roots. The frequencies of its superior alleles increased from wild soybean to cultivated soybean, and are much higher in released soybean cultivars.
The findings herein suggest that the sequence variation in GmSWEET39 affects its relative expression and oil content in soybean seeds, and GmSWEET39 has been selected to increase seed oil content during soybean domestication and improvement.</description><identifier>ISSN: 0028-646X</identifier><identifier>EISSN: 1469-8137</identifier><identifier>DOI: 10.1111/nph.16250</identifier><identifier>PMID: 31596499</identifier><language>eng</language><publisher>England: Wiley</publisher><subject>Alleles ; Arabidopsis - genetics ; Arabidopsis - metabolism ; Cultivars ; DNA sequences ; Domestication ; Efflux ; Gene expression ; Gene Expression Regulation, Plant ; Gene mapping ; Genes ; genetic improvement ; Genetic Variation ; Genetics ; Genotype ; Glycine (amino acid) ; Glycine max ; Glycine max - genetics ; GmSWEET39 ; Hairy root ; Inbreeding ; Linkage Disequilibrium ; Membrane proteins ; natural variation ; Oil ; Oils & fats ; Oilseeds ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Plant Roots ; Plants, Genetically Modified ; Population genetics ; Population studies ; Quantitative trait loci ; Recombinants ; seed oil content ; Seeds ; Seeds - chemistry ; Seeds - metabolism ; Selection, Genetic ; Sequencing ; soybean ; Soybean Oil - chemistry ; Soybean Oil - metabolism ; Soybeans ; Sucrose ; Sugar</subject><ispartof>The New phytologist, 2020-02, Vol.225 (4), p.1651-1666</ispartof><rights>2019 The Authors © 2019 New Phytologist Trust</rights><rights>2019 The Authors. New Phytologist © 2019 New Phytologist Trust</rights><rights>2019 The Authors. New Phytologist © 2019 New Phytologist Trust.</rights><rights>2019. This article is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2019 The Authors. © 2019 New Phytologist Trust</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4650-5e3922039232fa1cc953730d9312f3e10e73b77914b3f0a86a31937b09174cc3</citedby><cites>FETCH-LOGICAL-c4650-5e3922039232fa1cc953730d9312f3e10e73b77914b3f0a86a31937b09174cc3</cites><orcidid>0000-0003-4261-6914 ; 0000-0002-1627-7763 ; 0000-0003-1408-9846 ; 0000-0002-9685-7564</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/26896783$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/26896783$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,776,780,799,881,1411,1427,27901,27902,45550,45551,46384,46808,57992,58225</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31596499$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Miao, Long</creatorcontrib><creatorcontrib>Yang, Songnan</creatorcontrib><creatorcontrib>Zhang, Kai</creatorcontrib><creatorcontrib>He, Jianbo</creatorcontrib><creatorcontrib>Wu, Chunhua</creatorcontrib><creatorcontrib>Ren, Yanhua</creatorcontrib><creatorcontrib>Gai, Junyi</creatorcontrib><creatorcontrib>Li, Yan</creatorcontrib><title>Natural variation and selection in GmSWEET39 affect soybean seed oil content</title><title>The New phytologist</title><addtitle>New Phytol</addtitle><description>Soybean (Glycine max) is a major contributor to the world oilseed production. Its seed oil content has been increased through soybean domestication and improvement. However, the genes underlying the selection are largely unknown.
The present contribution analyzed the expression patterns of genes in the seed oil quantitative trait loci with strong selective sweep signals, then used association, functional study and population genetics to reveal a sucrose efflux transporter gene, GmSWEET39, controlling soybean seed oil content and under selection.
GmSWEET39 is highly expressed in soybean seeds and encodes a plasma membrane-localized protein. Its expression level is positively correlated with soybean seed oil content. The variation in its promoter and coding sequence leads to different natural alleles of this gene. The GmSWEET39 allelic effects on total oil content were confirmed in the seeds of soybean recombinant inbred lines, transgenic Arabidopsis, and transgenic soybean hairy roots. The frequencies of its superior alleles increased from wild soybean to cultivated soybean, and are much higher in released soybean cultivars.
The findings herein suggest that the sequence variation in GmSWEET39 affects its relative expression and oil content in soybean seeds, and GmSWEET39 has been selected to increase seed oil content during soybean domestication and improvement.</description><subject>Alleles</subject><subject>Arabidopsis - genetics</subject><subject>Arabidopsis - metabolism</subject><subject>Cultivars</subject><subject>DNA sequences</subject><subject>Domestication</subject><subject>Efflux</subject><subject>Gene expression</subject><subject>Gene Expression Regulation, Plant</subject><subject>Gene mapping</subject><subject>Genes</subject><subject>genetic improvement</subject><subject>Genetic Variation</subject><subject>Genetics</subject><subject>Genotype</subject><subject>Glycine (amino acid)</subject><subject>Glycine max</subject><subject>Glycine max - genetics</subject><subject>GmSWEET39</subject><subject>Hairy root</subject><subject>Inbreeding</subject><subject>Linkage Disequilibrium</subject><subject>Membrane proteins</subject><subject>natural variation</subject><subject>Oil</subject><subject>Oils & fats</subject><subject>Oilseeds</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Plant Roots</subject><subject>Plants, Genetically Modified</subject><subject>Population genetics</subject><subject>Population studies</subject><subject>Quantitative trait loci</subject><subject>Recombinants</subject><subject>seed oil content</subject><subject>Seeds</subject><subject>Seeds - chemistry</subject><subject>Seeds - metabolism</subject><subject>Selection, Genetic</subject><subject>Sequencing</subject><subject>soybean</subject><subject>Soybean Oil - chemistry</subject><subject>Soybean Oil - metabolism</subject><subject>Soybeans</subject><subject>Sucrose</subject><subject>Sugar</subject><issn>0028-646X</issn><issn>1469-8137</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kVFrFDEQx4Mo9lp98AMoC77ow7aTTDbZvAhSzlY4quCBvoVsLmtz7CVnslu5b9-01x4qmIcJmfzmn5n8CXlF4ZSWdRa216dUsAaekBnlQtUtRfmUzABYWwsufhyR45zXAKAawZ6TI6SNElypGVlcmXFKZqhuTPJm9DFUJqyq7AZn708-VBebb9_n8yWqyvR9SVc57jpnQqHcqop-qGwMowvjC_KsN0N2Lx_2E7L8NF-eX9aLLxefzz8uastFA3XjUDEGJSDrDbVWNSgRVgop69FRcBI7KRXlHfZgWmGQKpQdKCq5tXhCPuxlt1O3cStbXi4T6G3yG5N2Ohqv_74J_lr_jDdaciUUyCLw7kEgxV-Ty6Pe-GzdMJjg4pQ1Q0BGgVFe0Lf_oOs4pVCm04zj3QdT2hbq_Z6yKeacXH9ohoK-s0gXi_S9RYV982f3B_LRkwKc7YHffnC7_yvpq6-Xj5Kv9xXrPMZ0qGCiVUK2iLfd4qKu</recordid><startdate>202002</startdate><enddate>202002</enddate><creator>Miao, Long</creator><creator>Yang, Songnan</creator><creator>Zhang, Kai</creator><creator>He, Jianbo</creator><creator>Wu, Chunhua</creator><creator>Ren, Yanhua</creator><creator>Gai, Junyi</creator><creator>Li, Yan</creator><general>Wiley</general><general>Wiley Subscription Services, Inc</general><general>John Wiley and Sons Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7SN</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>L.G</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-4261-6914</orcidid><orcidid>https://orcid.org/0000-0002-1627-7763</orcidid><orcidid>https://orcid.org/0000-0003-1408-9846</orcidid><orcidid>https://orcid.org/0000-0002-9685-7564</orcidid></search><sort><creationdate>202002</creationdate><title>Natural variation and selection in GmSWEET39 affect soybean seed oil content</title><author>Miao, Long ; Yang, Songnan ; Zhang, Kai ; He, Jianbo ; Wu, Chunhua ; Ren, Yanhua ; Gai, Junyi ; Li, Yan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4650-5e3922039232fa1cc953730d9312f3e10e73b77914b3f0a86a31937b09174cc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Alleles</topic><topic>Arabidopsis - genetics</topic><topic>Arabidopsis - metabolism</topic><topic>Cultivars</topic><topic>DNA sequences</topic><topic>Domestication</topic><topic>Efflux</topic><topic>Gene expression</topic><topic>Gene Expression Regulation, Plant</topic><topic>Gene mapping</topic><topic>Genes</topic><topic>genetic improvement</topic><topic>Genetic Variation</topic><topic>Genetics</topic><topic>Genotype</topic><topic>Glycine (amino acid)</topic><topic>Glycine max</topic><topic>Glycine max - genetics</topic><topic>GmSWEET39</topic><topic>Hairy root</topic><topic>Inbreeding</topic><topic>Linkage Disequilibrium</topic><topic>Membrane proteins</topic><topic>natural variation</topic><topic>Oil</topic><topic>Oils & fats</topic><topic>Oilseeds</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Plant Roots</topic><topic>Plants, Genetically Modified</topic><topic>Population genetics</topic><topic>Population studies</topic><topic>Quantitative trait loci</topic><topic>Recombinants</topic><topic>seed oil content</topic><topic>Seeds</topic><topic>Seeds - chemistry</topic><topic>Seeds - metabolism</topic><topic>Selection, Genetic</topic><topic>Sequencing</topic><topic>soybean</topic><topic>Soybean Oil - chemistry</topic><topic>Soybean Oil - metabolism</topic><topic>Soybeans</topic><topic>Sucrose</topic><topic>Sugar</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Miao, Long</creatorcontrib><creatorcontrib>Yang, Songnan</creatorcontrib><creatorcontrib>Zhang, Kai</creatorcontrib><creatorcontrib>He, Jianbo</creatorcontrib><creatorcontrib>Wu, Chunhua</creatorcontrib><creatorcontrib>Ren, Yanhua</creatorcontrib><creatorcontrib>Gai, Junyi</creatorcontrib><creatorcontrib>Li, Yan</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Ecology Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>The New phytologist</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Miao, Long</au><au>Yang, Songnan</au><au>Zhang, Kai</au><au>He, Jianbo</au><au>Wu, Chunhua</au><au>Ren, Yanhua</au><au>Gai, Junyi</au><au>Li, Yan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Natural variation and selection in GmSWEET39 affect soybean seed oil content</atitle><jtitle>The New phytologist</jtitle><addtitle>New Phytol</addtitle><date>2020-02</date><risdate>2020</risdate><volume>225</volume><issue>4</issue><spage>1651</spage><epage>1666</epage><pages>1651-1666</pages><issn>0028-646X</issn><eissn>1469-8137</eissn><abstract>Soybean (Glycine max) is a major contributor to the world oilseed production. Its seed oil content has been increased through soybean domestication and improvement. However, the genes underlying the selection are largely unknown.
The present contribution analyzed the expression patterns of genes in the seed oil quantitative trait loci with strong selective sweep signals, then used association, functional study and population genetics to reveal a sucrose efflux transporter gene, GmSWEET39, controlling soybean seed oil content and under selection.
GmSWEET39 is highly expressed in soybean seeds and encodes a plasma membrane-localized protein. Its expression level is positively correlated with soybean seed oil content. The variation in its promoter and coding sequence leads to different natural alleles of this gene. The GmSWEET39 allelic effects on total oil content were confirmed in the seeds of soybean recombinant inbred lines, transgenic Arabidopsis, and transgenic soybean hairy roots. The frequencies of its superior alleles increased from wild soybean to cultivated soybean, and are much higher in released soybean cultivars.
The findings herein suggest that the sequence variation in GmSWEET39 affects its relative expression and oil content in soybean seeds, and GmSWEET39 has been selected to increase seed oil content during soybean domestication and improvement.</abstract><cop>England</cop><pub>Wiley</pub><pmid>31596499</pmid><doi>10.1111/nph.16250</doi><tpages>16</tpages><orcidid>https://orcid.org/0000-0003-4261-6914</orcidid><orcidid>https://orcid.org/0000-0002-1627-7763</orcidid><orcidid>https://orcid.org/0000-0003-1408-9846</orcidid><orcidid>https://orcid.org/0000-0002-9685-7564</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Alleles Arabidopsis - genetics Arabidopsis - metabolism Cultivars DNA sequences Domestication Efflux Gene expression Gene Expression Regulation, Plant Gene mapping Genes genetic improvement Genetic Variation Genetics Genotype Glycine (amino acid) Glycine max Glycine max - genetics GmSWEET39 Hairy root Inbreeding Linkage Disequilibrium Membrane proteins natural variation Oil Oils & fats Oilseeds Plant Proteins - genetics Plant Proteins - metabolism Plant Roots Plants, Genetically Modified Population genetics Population studies Quantitative trait loci Recombinants seed oil content Seeds Seeds - chemistry Seeds - metabolism Selection, Genetic Sequencing soybean Soybean Oil - chemistry Soybean Oil - metabolism Soybeans Sucrose Sugar |
| title | Natural variation and selection in GmSWEET39 affect soybean seed oil content |
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