A Guide and Toolbox to Replicability and Open Science in Entomology
Abstract The ability to replicate scientific experiments is a cornerstone of the scientific method. Sharing ideas, workflows, data, and protocols facilitates testing the generalizability of results, increases the speed that science progresses, and enhances quality control of published work. Fields o...
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Veröffentlicht in: | Journal of insect science (Tucson, Ariz.) Ariz.), 2020-05, Vol.20 (3) |
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container_title | Journal of insect science (Tucson, Ariz.) |
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creator | Wittman, Jacob T Aukema, Brian H |
description | Abstract
The ability to replicate scientific experiments is a cornerstone of the scientific method. Sharing ideas, workflows, data, and protocols facilitates testing the generalizability of results, increases the speed that science progresses, and enhances quality control of published work. Fields of science such as medicine, the social sciences, and the physical sciences have embraced practices designed to increase replicability. Granting agencies, for example, may require data management plans and journals may require data and code availability statements along with the deposition of data and code in publicly available repositories. While many tools commonly used in replicable workflows such as distributed version control systems (e.g., ‘git’) or script programming languages for data cleaning and analysis may have a steep learning curve, their adoption can increase individual efficiency and facilitate collaborations both within entomology and across disciplines. The open science movement is developing within the discipline of entomology, but practitioners of these concepts or those desiring to work more collaboratively across disciplines may be unsure where or how to embrace these initiatives. This article is meant to introduce some of the tools entomologists can incorporate into their workflows to increase the replicability and openness of their work. We describe these tools and others, recommend additional resources for learning more about these tools, and discuss the benefits to both individuals and the scientific community and potential drawbacks associated with implementing a replicable workflow. |
doi_str_mv | 10.1093/jisesa/ieaa036 |
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The ability to replicate scientific experiments is a cornerstone of the scientific method. Sharing ideas, workflows, data, and protocols facilitates testing the generalizability of results, increases the speed that science progresses, and enhances quality control of published work. Fields of science such as medicine, the social sciences, and the physical sciences have embraced practices designed to increase replicability. Granting agencies, for example, may require data management plans and journals may require data and code availability statements along with the deposition of data and code in publicly available repositories. While many tools commonly used in replicable workflows such as distributed version control systems (e.g., ‘git’) or script programming languages for data cleaning and analysis may have a steep learning curve, their adoption can increase individual efficiency and facilitate collaborations both within entomology and across disciplines. The open science movement is developing within the discipline of entomology, but practitioners of these concepts or those desiring to work more collaboratively across disciplines may be unsure where or how to embrace these initiatives. This article is meant to introduce some of the tools entomologists can incorporate into their workflows to increase the replicability and openness of their work. We describe these tools and others, recommend additional resources for learning more about these tools, and discuss the benefits to both individuals and the scientific community and potential drawbacks associated with implementing a replicable workflow.</description><identifier>ISSN: 1536-2442</identifier><identifier>EISSN: 1536-2442</identifier><identifier>DOI: 10.1093/jisesa/ieaa036</identifier><identifier>PMID: 32441307</identifier><language>eng</language><publisher>US: Oxford University Press</publisher><subject>Control systems ; Entomologists ; Entomology - instrumentation ; Entomology - methods ; Information management ; Research Design ; Review</subject><ispartof>Journal of insect science (Tucson, Ariz.), 2020-05, Vol.20 (3)</ispartof><rights>The Author(s) 2020. Published by Oxford University Press on behalf of Entomological Society of America. 2020</rights><rights>The Author(s) 2020. Published by Oxford University Press on behalf of Entomological Society of America.</rights><rights>COPYRIGHT 2020 Oxford University Press</rights><rights>The Author(s) 2020. Published by Oxford University Press on behalf of Entomological Society of America. 2020</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c497t-d9aea7265cfe37334126ba6b5bfb2e43b242bc3597052aa5ea9661ccc36455093</citedby><cites>FETCH-LOGICAL-c497t-d9aea7265cfe37334126ba6b5bfb2e43b242bc3597052aa5ea9661ccc36455093</cites><orcidid>0000-0002-2220-5598 ; 0000-0003-4370-0499</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7423018/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7423018/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,1604,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32441307$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>ODonnell, Sean</contributor><creatorcontrib>Wittman, Jacob T</creatorcontrib><creatorcontrib>Aukema, Brian H</creatorcontrib><title>A Guide and Toolbox to Replicability and Open Science in Entomology</title><title>Journal of insect science (Tucson, Ariz.)</title><addtitle>J Insect Sci</addtitle><description>Abstract
The ability to replicate scientific experiments is a cornerstone of the scientific method. Sharing ideas, workflows, data, and protocols facilitates testing the generalizability of results, increases the speed that science progresses, and enhances quality control of published work. Fields of science such as medicine, the social sciences, and the physical sciences have embraced practices designed to increase replicability. Granting agencies, for example, may require data management plans and journals may require data and code availability statements along with the deposition of data and code in publicly available repositories. While many tools commonly used in replicable workflows such as distributed version control systems (e.g., ‘git’) or script programming languages for data cleaning and analysis may have a steep learning curve, their adoption can increase individual efficiency and facilitate collaborations both within entomology and across disciplines. The open science movement is developing within the discipline of entomology, but practitioners of these concepts or those desiring to work more collaboratively across disciplines may be unsure where or how to embrace these initiatives. This article is meant to introduce some of the tools entomologists can incorporate into their workflows to increase the replicability and openness of their work. We describe these tools and others, recommend additional resources for learning more about these tools, and discuss the benefits to both individuals and the scientific community and potential drawbacks associated with implementing a replicable workflow.</description><subject>Control systems</subject><subject>Entomologists</subject><subject>Entomology - instrumentation</subject><subject>Entomology - methods</subject><subject>Information management</subject><subject>Research Design</subject><subject>Review</subject><issn>1536-2442</issn><issn>1536-2442</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>TOX</sourceid><sourceid>EIF</sourceid><recordid>eNqFkc1P3DAQxa2KqlDotccqR3pY8FeczQVptQKKhITEx9kaO5OtkWOHOEHsf1_Dbil7qnywNfPmN3p-hHxn9ITRWpw-uoQJTh0CUKE-kQNWCjXjUvK9D-998jWlR0o5lfP6C9kXucgErQ7IclFcTq7BAkJT3MfoTXwpxljcYu-dBeO8G9dvzZseQ3FnHQaLhQvFeRhjF31crY_I5xZ8wm_b-5A8XJzfL3_Nrm8ur5aL65mVdTXOmhoQKq5K26KohJCMKwPKlKY1HKUwXHJjRVlXtOQAJUKtFLPWCiXLMps9JGcbbj-ZDhuLYRzA635wHQxrHcHp3U5wv_UqPutKckHZPAOOt4AhPk2YRt25ZNF7CBinpLmkSrDXD8vSk410BR61C23MRJtPg52zMWDrcn2heK0or-csD_zcGciaEV_GFUwp6au7213tFm6HmNKA7bsHRvVrrHoTq97Gmgd-fHT-Lv-b47_tcer_B_sD6nStOw</recordid><startdate>20200501</startdate><enddate>20200501</enddate><creator>Wittman, Jacob T</creator><creator>Aukema, Brian H</creator><general>Oxford University Press</general><scope>TOX</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ISR</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-2220-5598</orcidid><orcidid>https://orcid.org/0000-0003-4370-0499</orcidid></search><sort><creationdate>20200501</creationdate><title>A Guide and Toolbox to Replicability and Open Science in Entomology</title><author>Wittman, Jacob T ; Aukema, Brian H</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c497t-d9aea7265cfe37334126ba6b5bfb2e43b242bc3597052aa5ea9661ccc36455093</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Control systems</topic><topic>Entomologists</topic><topic>Entomology - instrumentation</topic><topic>Entomology - methods</topic><topic>Information management</topic><topic>Research Design</topic><topic>Review</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wittman, Jacob T</creatorcontrib><creatorcontrib>Aukema, Brian H</creatorcontrib><collection>Oxford Journals Open Access Collection</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Science</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of insect science (Tucson, Ariz.)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wittman, Jacob T</au><au>Aukema, Brian H</au><au>ODonnell, Sean</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A Guide and Toolbox to Replicability and Open Science in Entomology</atitle><jtitle>Journal of insect science (Tucson, Ariz.)</jtitle><addtitle>J Insect Sci</addtitle><date>2020-05-01</date><risdate>2020</risdate><volume>20</volume><issue>3</issue><issn>1536-2442</issn><eissn>1536-2442</eissn><abstract>Abstract
The ability to replicate scientific experiments is a cornerstone of the scientific method. Sharing ideas, workflows, data, and protocols facilitates testing the generalizability of results, increases the speed that science progresses, and enhances quality control of published work. Fields of science such as medicine, the social sciences, and the physical sciences have embraced practices designed to increase replicability. Granting agencies, for example, may require data management plans and journals may require data and code availability statements along with the deposition of data and code in publicly available repositories. While many tools commonly used in replicable workflows such as distributed version control systems (e.g., ‘git’) or script programming languages for data cleaning and analysis may have a steep learning curve, their adoption can increase individual efficiency and facilitate collaborations both within entomology and across disciplines. The open science movement is developing within the discipline of entomology, but practitioners of these concepts or those desiring to work more collaboratively across disciplines may be unsure where or how to embrace these initiatives. This article is meant to introduce some of the tools entomologists can incorporate into their workflows to increase the replicability and openness of their work. We describe these tools and others, recommend additional resources for learning more about these tools, and discuss the benefits to both individuals and the scientific community and potential drawbacks associated with implementing a replicable workflow.</abstract><cop>US</cop><pub>Oxford University Press</pub><pmid>32441307</pmid><doi>10.1093/jisesa/ieaa036</doi><orcidid>https://orcid.org/0000-0002-2220-5598</orcidid><orcidid>https://orcid.org/0000-0003-4370-0499</orcidid><oa>free_for_read</oa></addata></record> |
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source | MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Oxford Journals Open Access Collection; PubMed Central |
subjects | Control systems Entomologists Entomology - instrumentation Entomology - methods Information management Research Design Review |
title | A Guide and Toolbox to Replicability and Open Science in Entomology |
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