Association mapping of malting quality traits in UK spring and winter barley cultivar collections
Key message Historical malting quality data was collated from UK national and recommended list trial data and used in a GWAS. 25 QTL were identified, with the majority from spring barley cultivar sets. In Europe, the most economically significant use of barley is the production of malt for use in th...
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| Veröffentlicht in: | Theoretical and applied genetics 2020-09, Vol.133 (9), p.2567-2582 |
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| creator | Looseley, Mark E. Ramsay, Luke Bull, Hazel Swanston, J. Stuart Shaw, Paul D. Macaulay, Malcolm Booth, Allan Russell, Joanne R. Waugh, Robbie Thomas, William T. B. |
| description | Key message
Historical malting quality data was collated from UK national and recommended list trial data and used in a GWAS. 25 QTL were identified, with the majority from spring barley cultivar sets.
In Europe, the most economically significant use of barley is the production of malt for use in the brewing and distilling industries. As such, selection for traits related to malting quality is of great commercial interest. In order to study the genetic basis of variation for malting quality traits in UK cultivars, a historical set of trial data was collated from national and recommended list trials from the period 1988 to 2016. This data was used to estimate variety means for 20 quality related traits in 451 spring barley cultivars, and 407 winter cultivars. Genotypes for these cultivars were generated using iSelect 9k and 50k genotyping platforms, and a genome wide association scan performed to identify malting quality quantitative trait loci (QTL). 24 QTL were identified in spring barley cultivars, and 2 from the winter set. A number of these correspond to known malting quality related genes but the remainder represents novel genetic variation that is accessible to breeders for the genetic improvement of new cultivars. |
| doi_str_mv | 10.1007/s00122-020-03618-9 |
| format | Article |
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Historical malting quality data was collated from UK national and recommended list trial data and used in a GWAS. 25 QTL were identified, with the majority from spring barley cultivar sets.
In Europe, the most economically significant use of barley is the production of malt for use in the brewing and distilling industries. As such, selection for traits related to malting quality is of great commercial interest. In order to study the genetic basis of variation for malting quality traits in UK cultivars, a historical set of trial data was collated from national and recommended list trials from the period 1988 to 2016. This data was used to estimate variety means for 20 quality related traits in 451 spring barley cultivars, and 407 winter cultivars. Genotypes for these cultivars were generated using iSelect 9k and 50k genotyping platforms, and a genome wide association scan performed to identify malting quality quantitative trait loci (QTL). 24 QTL were identified in spring barley cultivars, and 2 from the winter set. A number of these correspond to known malting quality related genes but the remainder represents novel genetic variation that is accessible to breeders for the genetic improvement of new cultivars.</description><identifier>ISSN: 0040-5752</identifier><identifier>EISSN: 1432-2242</identifier><identifier>DOI: 10.1007/s00122-020-03618-9</identifier><identifier>PMID: 32506274</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Agriculture ; Barley ; Biochemistry ; Biomedical and Life Sciences ; Biotechnology ; Brewing ; Chromosome Mapping ; Cultivars ; Gene mapping ; Genetic Association Studies ; Genetic diversity ; Genomes ; Genotype ; Genotypes ; Genotyping ; Hordeum - genetics ; Life Sciences ; Original ; Original Article ; Phenotype ; Plant Biochemistry ; Plant Breeding ; Plant Breeding/Biotechnology ; Plant Genetics and Genomics ; Quality ; Quality management ; Quantitative genetics ; Quantitative Trait Loci ; United Kingdom ; Winter</subject><ispartof>Theoretical and applied genetics, 2020-09, Vol.133 (9), p.2567-2582</ispartof><rights>The Author(s) 2020</rights><rights>COPYRIGHT 2020 Springer</rights><rights>The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c641t-5a2db7523b3cc11fa73bee111a7fa313920fafd7d1b39de43219f304d751fae53</citedby><cites>FETCH-LOGICAL-c641t-5a2db7523b3cc11fa73bee111a7fa313920fafd7d1b39de43219f304d751fae53</cites><orcidid>0000-0003-2209-2308</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00122-020-03618-9$$EPDF$$P50$$Gspringer$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00122-020-03618-9$$EHTML$$P50$$Gspringer$$Hfree_for_read</linktohtml><link.rule.ids>230,314,776,780,881,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32506274$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Looseley, Mark E.</creatorcontrib><creatorcontrib>Ramsay, Luke</creatorcontrib><creatorcontrib>Bull, Hazel</creatorcontrib><creatorcontrib>Swanston, J. Stuart</creatorcontrib><creatorcontrib>Shaw, Paul D.</creatorcontrib><creatorcontrib>Macaulay, Malcolm</creatorcontrib><creatorcontrib>Booth, Allan</creatorcontrib><creatorcontrib>Russell, Joanne R.</creatorcontrib><creatorcontrib>Waugh, Robbie</creatorcontrib><creatorcontrib>Thomas, William T. B.</creatorcontrib><creatorcontrib>IMPROMALT Consortium</creatorcontrib><creatorcontrib>the IMPROMALT Consortium</creatorcontrib><title>Association mapping of malting quality traits in UK spring and winter barley cultivar collections</title><title>Theoretical and applied genetics</title><addtitle>Theor Appl Genet</addtitle><addtitle>Theor Appl Genet</addtitle><description>Key message
Historical malting quality data was collated from UK national and recommended list trial data and used in a GWAS. 25 QTL were identified, with the majority from spring barley cultivar sets.
In Europe, the most economically significant use of barley is the production of malt for use in the brewing and distilling industries. As such, selection for traits related to malting quality is of great commercial interest. In order to study the genetic basis of variation for malting quality traits in UK cultivars, a historical set of trial data was collated from national and recommended list trials from the period 1988 to 2016. This data was used to estimate variety means for 20 quality related traits in 451 spring barley cultivars, and 407 winter cultivars. Genotypes for these cultivars were generated using iSelect 9k and 50k genotyping platforms, and a genome wide association scan performed to identify malting quality quantitative trait loci (QTL). 24 QTL were identified in spring barley cultivars, and 2 from the winter set. A number of these correspond to known malting quality related genes but the remainder represents novel genetic variation that is accessible to breeders for the genetic improvement of new cultivars.</description><subject>Agriculture</subject><subject>Barley</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Brewing</subject><subject>Chromosome Mapping</subject><subject>Cultivars</subject><subject>Gene mapping</subject><subject>Genetic Association Studies</subject><subject>Genetic diversity</subject><subject>Genomes</subject><subject>Genotype</subject><subject>Genotypes</subject><subject>Genotyping</subject><subject>Hordeum - genetics</subject><subject>Life Sciences</subject><subject>Original</subject><subject>Original Article</subject><subject>Phenotype</subject><subject>Plant Biochemistry</subject><subject>Plant Breeding</subject><subject>Plant Breeding/Biotechnology</subject><subject>Plant Genetics and Genomics</subject><subject>Quality</subject><subject>Quality management</subject><subject>Quantitative genetics</subject><subject>Quantitative Trait Loci</subject><subject>United Kingdom</subject><subject>Winter</subject><issn>0040-5752</issn><issn>1432-2242</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNp9kktv1DAUhSMEokPhD7BAkdiURcr1K55skEYVj4pKSEDXluM4gyvHntpJYf49N6S0DELIi2vZ3zm-1zpF8ZzAKQGQrzMAobQCChWwmqyr5kGxIpzRilJOHxYrAA6VkIIeFU9yvgIAKoA9Lo4Y1ppKvir0JudonB5dDOWgdzsXtmXscevHeXs9ae_GfTkm7cZculBefizzLs13OnTldxdGm8pWJ2_3pZlQdaNTaaL31sym-WnxqNc-22e39bi4fPf269mH6uLT-_OzzUVlak7GSmjatdgqa5kxhPRastZaQoiWvWaENRR63XeyIy1rOotTkqZnwDspELaCHRdvFt_d1A62MzZgz15hq4NOexW1U4c3wX1T23ijJCcNFwQNTm4NUryebB7V4LKx3utg45QV5QQkcEE5oi__Qq_ilAKOhxSj9VoyIe6prfZWudBHfNfMpmpTM0rXggFD6vQfFK7ODs7EYHuH5weCVwcCZEb7Y9zqKWd1_uXzIUsX1qSYc7L93X8QUHOI1BIihSFSv0KkGhS9-PMn7yS_U4MAW4AlCDbdj_8f258pl9FR</recordid><startdate>20200901</startdate><enddate>20200901</enddate><creator>Looseley, Mark E.</creator><creator>Ramsay, Luke</creator><creator>Bull, Hazel</creator><creator>Swanston, J. 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Stuart</au><au>Shaw, Paul D.</au><au>Macaulay, Malcolm</au><au>Booth, Allan</au><au>Russell, Joanne R.</au><au>Waugh, Robbie</au><au>Thomas, William T. B.</au><aucorp>IMPROMALT Consortium</aucorp><aucorp>the IMPROMALT Consortium</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Association mapping of malting quality traits in UK spring and winter barley cultivar collections</atitle><jtitle>Theoretical and applied genetics</jtitle><stitle>Theor Appl Genet</stitle><addtitle>Theor Appl Genet</addtitle><date>2020-09-01</date><risdate>2020</risdate><volume>133</volume><issue>9</issue><spage>2567</spage><epage>2582</epage><pages>2567-2582</pages><issn>0040-5752</issn><eissn>1432-2242</eissn><abstract>Key message
Historical malting quality data was collated from UK national and recommended list trial data and used in a GWAS. 25 QTL were identified, with the majority from spring barley cultivar sets.
In Europe, the most economically significant use of barley is the production of malt for use in the brewing and distilling industries. As such, selection for traits related to malting quality is of great commercial interest. In order to study the genetic basis of variation for malting quality traits in UK cultivars, a historical set of trial data was collated from national and recommended list trials from the period 1988 to 2016. This data was used to estimate variety means for 20 quality related traits in 451 spring barley cultivars, and 407 winter cultivars. Genotypes for these cultivars were generated using iSelect 9k and 50k genotyping platforms, and a genome wide association scan performed to identify malting quality quantitative trait loci (QTL). 24 QTL were identified in spring barley cultivars, and 2 from the winter set. A number of these correspond to known malting quality related genes but the remainder represents novel genetic variation that is accessible to breeders for the genetic improvement of new cultivars.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>32506274</pmid><doi>10.1007/s00122-020-03618-9</doi><tpages>16</tpages><orcidid>https://orcid.org/0000-0003-2209-2308</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Agriculture Barley Biochemistry Biomedical and Life Sciences Biotechnology Brewing Chromosome Mapping Cultivars Gene mapping Genetic Association Studies Genetic diversity Genomes Genotype Genotypes Genotyping Hordeum - genetics Life Sciences Original Original Article Phenotype Plant Biochemistry Plant Breeding Plant Breeding/Biotechnology Plant Genetics and Genomics Quality Quality management Quantitative genetics Quantitative Trait Loci United Kingdom Winter |
| title | Association mapping of malting quality traits in UK spring and winter barley cultivar collections |
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