Genetic relationship study of some Vicia species by FISH and total seed storage protein patterns
Background Genus Vicia is a member of family Fabaceae and comprises 180 to 210 species. The most important species is faba bean ( Vicia faba ) which is still one of the most favourable grain legumes over all the world. The genus contains some additional food crops and a number of forage plants and s...
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description | Background
Genus
Vicia
is a member of family Fabaceae and comprises 180 to 210 species. The most important species is faba bean (
Vicia faba
) which is still one of the most favourable grain legumes over all the world. The genus contains some additional food crops and a number of forage plants and some other weedy strains such as
Vicia angustifolia
and
Vicia cordata
. The aim of the present investigation is to elucidate the phylogenetic relationships among four
Vicia
species, two species (
Vicia angustifolia
L. ssp. Angustifolia (2n = 12) and
Vicia cordata
wulfen ex Hoppe (2n = 10)) belong to section
Vicia
,
Vicia dalmatica
A. Kern (2n = 12, section Cracca), and
Vicia johannis
tamamsch (2n = 14, section Faba).
Results
Two tools have been applied to identify the genetic relationships among the examined species, double fluorescence in situ hybridization (FISH) has been used to localize the sites of 5S and 45S rDNA, and sodium dodecyl sulfate-poly acrylamide gel electrophoretic (SDS-PAGE) patterns of total seed storage protein fractions. Double FISH experiment has not shown any variation in the loci number, but the positions along the chromosomes were different; both
Vicia johannis
and
Vicia dalmatica
exhibited the same interstitial 45S rRNA gene loci, while
Vicia angustifolia
and
Vicia cordata
have shown single large stretched 45S rRNA loci almost at the terminal region of the shortest chromosome. It could be concluded from the similarity matrix among the
Vicia
species as computed according to Jaccard coefficient from the SDS-PAGE, that
V
.
cordata
is similar to
V
.
angustifolia
and
V
.
dalmatica
by a percentage of 73 and 69%, respectively, and the most related species to
V
.
johannis
is
V
.
dalmatica
(~ 64%).
Conclusion
FISH and SDS-PAGE of the total seed storage proteins together reflected the similar genetic relationship among the studied species as fellows,
V
.
angustifolia
is more related to
V
.
cordata
then comes
V
.
dalmatica
and then
V
.
johannis
which is at a distal position from the other species. |
doi_str_mv | 10.1186/s43141-020-00054-6 |
format | Article |
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Genus
Vicia
is a member of family Fabaceae and comprises 180 to 210 species. The most important species is faba bean (
Vicia faba
) which is still one of the most favourable grain legumes over all the world. The genus contains some additional food crops and a number of forage plants and some other weedy strains such as
Vicia angustifolia
and
Vicia cordata
. The aim of the present investigation is to elucidate the phylogenetic relationships among four
Vicia
species, two species (
Vicia angustifolia
L. ssp. Angustifolia (2n = 12) and
Vicia cordata
wulfen ex Hoppe (2n = 10)) belong to section
Vicia
,
Vicia dalmatica
A. Kern (2n = 12, section Cracca), and
Vicia johannis
tamamsch (2n = 14, section Faba).
Results
Two tools have been applied to identify the genetic relationships among the examined species, double fluorescence in situ hybridization (FISH) has been used to localize the sites of 5S and 45S rDNA, and sodium dodecyl sulfate-poly acrylamide gel electrophoretic (SDS-PAGE) patterns of total seed storage protein fractions. Double FISH experiment has not shown any variation in the loci number, but the positions along the chromosomes were different; both
Vicia johannis
and
Vicia dalmatica
exhibited the same interstitial 45S rRNA gene loci, while
Vicia angustifolia
and
Vicia cordata
have shown single large stretched 45S rRNA loci almost at the terminal region of the shortest chromosome. It could be concluded from the similarity matrix among the
Vicia
species as computed according to Jaccard coefficient from the SDS-PAGE, that
V
.
cordata
is similar to
V
.
angustifolia
and
V
.
dalmatica
by a percentage of 73 and 69%, respectively, and the most related species to
V
.
johannis
is
V
.
dalmatica
(~ 64%).
Conclusion
FISH and SDS-PAGE of the total seed storage proteins together reflected the similar genetic relationship among the studied species as fellows,
V
.
angustifolia
is more related to
V
.
cordata
then comes
V
.
dalmatica
and then
V
.
johannis
which is at a distal position from the other species.</description><identifier>ISSN: 1687-157X</identifier><identifier>EISSN: 2090-5920</identifier><identifier>DOI: 10.1186/s43141-020-00054-6</identifier><identifier>PMID: 32737692</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Acrylamide ; Animal behavior ; Beans ; Biomedical Engineering and Bioengineering ; Broad beans ; Chromosomes ; Engineering ; Ethanol ; Evolution ; FISH ; Flowers & plants ; Fluorescence in situ hybridization ; Gel electrophoresis ; Gene loci ; Genetic relationship ; Genetic relationships ; Genomes ; Germplasm ; Hybridization ; Laboratories ; Legumes ; Mimosaceae ; Phylogeny ; Proteins ; rDNA ; Ribosomal DNA ; RNA ; rRNA 45S ; SDS-PAGE ; Seeds ; Sodium dodecyl sulfate ; Sodium lauryl sulfate ; Storage proteins ; Sulfates ; Surface active agents ; Vicia ; Vicia angustifolia ; Vicia cordata ; Vicia dalmatica ; Vicia faba ; Vicia johannis</subject><ispartof>Journal of Genetic Engineering and Biotechnology, 2020-07, Vol.18 (1), p.37-10, Article 37</ispartof><rights>The Author(s) 2020</rights><rights>COPYRIGHT 2020 Springer</rights><rights>The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c535t-8731252087c64e2490aca030499a085924ce6b206a26bf49d9e8d397a30085b43</cites><orcidid>0000-0002-9260-7517</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7394970/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7394970/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27924,27925,53791,53793</link.rule.ids></links><search><creatorcontrib>Ali, Hoda B. M.</creatorcontrib><creatorcontrib>Osman, Samira A.</creatorcontrib><title>Genetic relationship study of some Vicia species by FISH and total seed storage protein patterns</title><title>Journal of Genetic Engineering and Biotechnology</title><addtitle>J Genet Eng Biotechnol</addtitle><description>Background
Genus
Vicia
is a member of family Fabaceae and comprises 180 to 210 species. The most important species is faba bean (
Vicia faba
) which is still one of the most favourable grain legumes over all the world. The genus contains some additional food crops and a number of forage plants and some other weedy strains such as
Vicia angustifolia
and
Vicia cordata
. The aim of the present investigation is to elucidate the phylogenetic relationships among four
Vicia
species, two species (
Vicia angustifolia
L. ssp. Angustifolia (2n = 12) and
Vicia cordata
wulfen ex Hoppe (2n = 10)) belong to section
Vicia
,
Vicia dalmatica
A. Kern (2n = 12, section Cracca), and
Vicia johannis
tamamsch (2n = 14, section Faba).
Results
Two tools have been applied to identify the genetic relationships among the examined species, double fluorescence in situ hybridization (FISH) has been used to localize the sites of 5S and 45S rDNA, and sodium dodecyl sulfate-poly acrylamide gel electrophoretic (SDS-PAGE) patterns of total seed storage protein fractions. Double FISH experiment has not shown any variation in the loci number, but the positions along the chromosomes were different; both
Vicia johannis
and
Vicia dalmatica
exhibited the same interstitial 45S rRNA gene loci, while
Vicia angustifolia
and
Vicia cordata
have shown single large stretched 45S rRNA loci almost at the terminal region of the shortest chromosome. It could be concluded from the similarity matrix among the
Vicia
species as computed according to Jaccard coefficient from the SDS-PAGE, that
V
.
cordata
is similar to
V
.
angustifolia
and
V
.
dalmatica
by a percentage of 73 and 69%, respectively, and the most related species to
V
.
johannis
is
V
.
dalmatica
(~ 64%).
Conclusion
FISH and SDS-PAGE of the total seed storage proteins together reflected the similar genetic relationship among the studied species as fellows,
V
.
angustifolia
is more related to
V
.
cordata
then comes
V
.
dalmatica
and then
V
.
johannis
which is at a distal position from the other species.</description><subject>Acrylamide</subject><subject>Animal behavior</subject><subject>Beans</subject><subject>Biomedical Engineering and Bioengineering</subject><subject>Broad beans</subject><subject>Chromosomes</subject><subject>Engineering</subject><subject>Ethanol</subject><subject>Evolution</subject><subject>FISH</subject><subject>Flowers & plants</subject><subject>Fluorescence in situ hybridization</subject><subject>Gel electrophoresis</subject><subject>Gene loci</subject><subject>Genetic relationship</subject><subject>Genetic relationships</subject><subject>Genomes</subject><subject>Germplasm</subject><subject>Hybridization</subject><subject>Laboratories</subject><subject>Legumes</subject><subject>Mimosaceae</subject><subject>Phylogeny</subject><subject>Proteins</subject><subject>rDNA</subject><subject>Ribosomal DNA</subject><subject>RNA</subject><subject>rRNA 45S</subject><subject>SDS-PAGE</subject><subject>Seeds</subject><subject>Sodium dodecyl sulfate</subject><subject>Sodium lauryl sulfate</subject><subject>Storage proteins</subject><subject>Sulfates</subject><subject>Surface active agents</subject><subject>Vicia</subject><subject>Vicia angustifolia</subject><subject>Vicia cordata</subject><subject>Vicia dalmatica</subject><subject>Vicia faba</subject><subject>Vicia johannis</subject><issn>1687-157X</issn><issn>2090-5920</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>DOA</sourceid><recordid>eNp9kktr3DAUhU1paYY0f6ArQddO9bJkbQohNMlAIIs-6E6V5WtHgy25kqYw_77qODQMhKKF4N5zPs6FU1XvCb4kpBUfE2eEkxpTXGOMG16LV9WGYoXrRlH8utoQ0cqaNPLHWXWR0g4fVS1pyNvqjFHJpFB0U_28BQ_ZWRRhMtkFnx7dglLe9wcUBpTCDOi7s86gtIB1kFB3QDfbL3fI-B7lkM2EEkBfLCGaEdASQwbn0WJyhujTu-rNYKYEF0__efXt5vPX67v6_uF2e311X9uGNbluJSO0obiVVnCgXGFjDWaYK2VwW07iFkRHsTBUdANXvYK2Z0oahsu64-y82q7cPpidXqKbTTzoYJw-DkIctYnl0Ak0FYR2wETbY8V7yztLWwnWCCFFZ5UsrE8ra9l3M_QWfI5mOoGebrx71GP4rSVTXElcAB-eADH82kPKehf20Zf7NZVUNYxLRZ5VoympnB9CgdnZJauvhCwq2TJVVJcvqMrrYXY2eBhcmZ8Y6GqwMaQUYfgXnGD9tzt67Y4u3dHHVmhRTGw1pSL2I8TnxP9x_QF508Mk</recordid><startdate>20200731</startdate><enddate>20200731</enddate><creator>Ali, Hoda B. M.</creator><creator>Osman, Samira A.</creator><general>Springer Berlin Heidelberg</general><general>Springer</general><general>Springer Nature B.V</general><general>Elsevier</general><scope>C6C</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>L6V</scope><scope>LK8</scope><scope>M7P</scope><scope>M7S</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-9260-7517</orcidid></search><sort><creationdate>20200731</creationdate><title>Genetic relationship study of some Vicia species by FISH and total seed storage protein patterns</title><author>Ali, Hoda B. M. ; Osman, Samira A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c535t-8731252087c64e2490aca030499a085924ce6b206a26bf49d9e8d397a30085b43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Acrylamide</topic><topic>Animal behavior</topic><topic>Beans</topic><topic>Biomedical Engineering and Bioengineering</topic><topic>Broad beans</topic><topic>Chromosomes</topic><topic>Engineering</topic><topic>Ethanol</topic><topic>Evolution</topic><topic>FISH</topic><topic>Flowers & plants</topic><topic>Fluorescence in situ hybridization</topic><topic>Gel electrophoresis</topic><topic>Gene loci</topic><topic>Genetic relationship</topic><topic>Genetic relationships</topic><topic>Genomes</topic><topic>Germplasm</topic><topic>Hybridization</topic><topic>Laboratories</topic><topic>Legumes</topic><topic>Mimosaceae</topic><topic>Phylogeny</topic><topic>Proteins</topic><topic>rDNA</topic><topic>Ribosomal DNA</topic><topic>RNA</topic><topic>rRNA 45S</topic><topic>SDS-PAGE</topic><topic>Seeds</topic><topic>Sodium dodecyl sulfate</topic><topic>Sodium lauryl sulfate</topic><topic>Storage proteins</topic><topic>Sulfates</topic><topic>Surface active agents</topic><topic>Vicia</topic><topic>Vicia angustifolia</topic><topic>Vicia cordata</topic><topic>Vicia dalmatica</topic><topic>Vicia faba</topic><topic>Vicia johannis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ali, Hoda B. M.</creatorcontrib><creatorcontrib>Osman, Samira A.</creatorcontrib><collection>Springer Nature OA/Free Journals</collection><collection>CrossRef</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Engineering Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>Engineering Database</collection><collection>Access via ProQuest (Open Access)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering Collection</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Journal of Genetic Engineering and Biotechnology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ali, Hoda B. M.</au><au>Osman, Samira A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic relationship study of some Vicia species by FISH and total seed storage protein patterns</atitle><jtitle>Journal of Genetic Engineering and Biotechnology</jtitle><stitle>J Genet Eng Biotechnol</stitle><date>2020-07-31</date><risdate>2020</risdate><volume>18</volume><issue>1</issue><spage>37</spage><epage>10</epage><pages>37-10</pages><artnum>37</artnum><issn>1687-157X</issn><eissn>2090-5920</eissn><abstract>Background
Genus
Vicia
is a member of family Fabaceae and comprises 180 to 210 species. The most important species is faba bean (
Vicia faba
) which is still one of the most favourable grain legumes over all the world. The genus contains some additional food crops and a number of forage plants and some other weedy strains such as
Vicia angustifolia
and
Vicia cordata
. The aim of the present investigation is to elucidate the phylogenetic relationships among four
Vicia
species, two species (
Vicia angustifolia
L. ssp. Angustifolia (2n = 12) and
Vicia cordata
wulfen ex Hoppe (2n = 10)) belong to section
Vicia
,
Vicia dalmatica
A. Kern (2n = 12, section Cracca), and
Vicia johannis
tamamsch (2n = 14, section Faba).
Results
Two tools have been applied to identify the genetic relationships among the examined species, double fluorescence in situ hybridization (FISH) has been used to localize the sites of 5S and 45S rDNA, and sodium dodecyl sulfate-poly acrylamide gel electrophoretic (SDS-PAGE) patterns of total seed storage protein fractions. Double FISH experiment has not shown any variation in the loci number, but the positions along the chromosomes were different; both
Vicia johannis
and
Vicia dalmatica
exhibited the same interstitial 45S rRNA gene loci, while
Vicia angustifolia
and
Vicia cordata
have shown single large stretched 45S rRNA loci almost at the terminal region of the shortest chromosome. It could be concluded from the similarity matrix among the
Vicia
species as computed according to Jaccard coefficient from the SDS-PAGE, that
V
.
cordata
is similar to
V
.
angustifolia
and
V
.
dalmatica
by a percentage of 73 and 69%, respectively, and the most related species to
V
.
johannis
is
V
.
dalmatica
(~ 64%).
Conclusion
FISH and SDS-PAGE of the total seed storage proteins together reflected the similar genetic relationship among the studied species as fellows,
V
.
angustifolia
is more related to
V
.
cordata
then comes
V
.
dalmatica
and then
V
.
johannis
which is at a distal position from the other species.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>32737692</pmid><doi>10.1186/s43141-020-00054-6</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0002-9260-7517</orcidid><oa>free_for_read</oa></addata></record> |
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source | DOAJ Directory of Open Access Journals; EZB-FREE-00999 freely available EZB journals; PubMed Central; Alma/SFX Local Collection; Springer Nature OA/Free Journals |
subjects | Acrylamide Animal behavior Beans Biomedical Engineering and Bioengineering Broad beans Chromosomes Engineering Ethanol Evolution FISH Flowers & plants Fluorescence in situ hybridization Gel electrophoresis Gene loci Genetic relationship Genetic relationships Genomes Germplasm Hybridization Laboratories Legumes Mimosaceae Phylogeny Proteins rDNA Ribosomal DNA RNA rRNA 45S SDS-PAGE Seeds Sodium dodecyl sulfate Sodium lauryl sulfate Storage proteins Sulfates Surface active agents Vicia Vicia angustifolia Vicia cordata Vicia dalmatica Vicia faba Vicia johannis |
title | Genetic relationship study of some Vicia species by FISH and total seed storage protein patterns |
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