Association of microbiota in the stomach of Sinanodonta woodiana and its cultured soil
The current study aimed to investigate the association of microbial characteristics in the stomach of Sinanodonta woodiana ( S. woodiana ) and its cultured soil. S. woodiana stomach and its cultured soil were collected in winter 2019. The V3 + V4 regions of the 16S rRNA gene were sequenced to detect...
Gespeichert in:
| Veröffentlicht in: | 3 Biotech 2020-07, Vol.10 (7), p.319-319, Article 319 |
|---|---|
| Hauptverfasser: | , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 319 |
|---|---|
| container_issue | 7 |
| container_start_page | 319 |
| container_title | 3 Biotech |
| container_volume | 10 |
| creator | Tan, Kai Xu, Can Long, Chengxing |
| description | The current study aimed to investigate the association of microbial characteristics in the stomach of
Sinanodonta woodiana
(
S. woodiana
) and its cultured soil.
S. woodiana
stomach and its cultured soil were collected in winter 2019. The V3 + V4 regions of the 16S rRNA gene were sequenced to detect microbial diversity. The differences in the dominant species between
S. woodiana
and soil were also discussed. The results showed that the diversity and richness indices in
S. woodiana
were significantly higher than those in cultured soil (
P
|
| doi_str_mv | 10.1007/s13205-020-02313-2 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_7320126</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2420641250</sourcerecordid><originalsourceid>FETCH-LOGICAL-c3662-698a7548ce5924ecc368fba7c2ef02f7446fd576be72690c2083847f9d567773</originalsourceid><addsrcrecordid>eNp9kU9LBSEUxSWKildfoJXQps2UXkcdN0FE_yBoUUQ78TlOz5jR0pmib5-vF0UtEsSL93cOeg9Ce5QcUkLkUaYMCK8IkLIZZRWsoW2gilRcsmb9u4aHLbSb8xMpi1OuKNlEWwwECMHUNro_yTlab0YfA44dHrxNce7jaLAPeFw4nMc4GLtYNm99MCG2MZTuW4ytN8FgE1rsx4zt1I9Tci3O0fc7aKMzfXa7X-cM3Z2f3Z1eVtc3F1enJ9eVZUJAJVRjJK8b67iC2tly23RzIy24jkAn61p0LZdi7iQIRSyQhjW17FTLhZSSzdDxyvZ5mg-utS6MyfT6OfnBpHcdjde_O8Ev9GN81bIMj4IoBgdfBim-TC6PevDZur43wcUpa6iBiJoCJwXd_4M-xSmF8rtCUSmVahQUClZUGWPOyXXfj6FEL4PTq-B0CU5_BqeXIrYS5QKHR5d-rP9RfQBP3plw</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2417799892</pqid></control><display><type>article</type><title>Association of microbiota in the stomach of Sinanodonta woodiana and its cultured soil</title><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><source>SpringerLink Journals - AutoHoldings</source><creator>Tan, Kai ; Xu, Can ; Long, Chengxing</creator><creatorcontrib>Tan, Kai ; Xu, Can ; Long, Chengxing</creatorcontrib><description>The current study aimed to investigate the association of microbial characteristics in the stomach of
Sinanodonta woodiana
(
S. woodiana
) and its cultured soil.
S. woodiana
stomach and its cultured soil were collected in winter 2019. The V3 + V4 regions of the 16S rRNA gene were sequenced to detect microbial diversity. The differences in the dominant species between
S. woodiana
and soil were also discussed. The results showed that the diversity and richness indices in
S. woodiana
were significantly higher than those in cultured soil (
P
< 0.01). At the phylum level, the dominant bacterial community compositions in the two groups were similar and included Proteobacteria, Firmicutes, Bacteroidetes, Cyanobacteria, Fusobacteria, and Acidobacteria. However, the abundance of these phyla was significantly different between the two groups (
P
< 0.05 or
P
< 0.01), and Proteobacteria was the most abundant phylum. At the genus level, a total of 1001 genera were identified in the two groups, of which 890 genera were detected in the cultured soil and 549 were detected in the
S. woodiana
stomach; 452 were unique to the cultured soil, and 111 were unique to the
S. woodiana
stomach. This result indicated great differences in the bacterial genera between the two groups. Moreover, 17 out of the 20 dominant bacterial genera exhibited statistically significant differences between the two groups (
P
< 0.05 or
P
< 0.01).
Cupriavidus
was the absolute dominant genus in the stomach of
S. woodiana
, followed by
Sphingomonas
and
Burkholderia
. The microorganisms in the stomach of
S. woodiana
formed a certain inherent bacterial system and were affected by the environment, which is beneficial to nutrition and health. In conclusion, the bacterial compositions were mostly the same between the stomach of
S. woodiana
and cultured soil, but the relative abundances of the bacterial communities were different. This study will greatly enhance the understanding of the microbial characteristics between the stomach of
S. woodiana
and the cultured environment, and provide guidance for healthy aquaculture in freshwater.</description><identifier>ISSN: 2190-572X</identifier><identifier>EISSN: 2190-5738</identifier><identifier>DOI: 10.1007/s13205-020-02313-2</identifier><identifier>PMID: 32626639</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Abundance ; Agriculture ; Aquaculture ; Bacteria ; Bioinformatics ; Biomaterials ; Biotechnology ; Cancer Research ; Chemistry ; Chemistry and Materials Science ; Composition ; Cyanobacteria ; Dominant species ; Microbiota ; Microorganisms ; Nutrition ; Original ; Original Article ; Proteobacteria ; rRNA 16S ; Sinanodonta woodiana ; Soil investigations ; Soils ; Statistical analysis ; Stem Cells ; Stomach</subject><ispartof>3 Biotech, 2020-07, Vol.10 (7), p.319-319, Article 319</ispartof><rights>King Abdulaziz City for Science and Technology 2020</rights><rights>King Abdulaziz City for Science and Technology 2020.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3662-698a7548ce5924ecc368fba7c2ef02f7446fd576be72690c2083847f9d567773</citedby><cites>FETCH-LOGICAL-c3662-698a7548ce5924ecc368fba7c2ef02f7446fd576be72690c2083847f9d567773</cites><orcidid>0000-0002-7294-9472</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7320126/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7320126/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,41488,42557,51319,53791,53793</link.rule.ids></links><search><creatorcontrib>Tan, Kai</creatorcontrib><creatorcontrib>Xu, Can</creatorcontrib><creatorcontrib>Long, Chengxing</creatorcontrib><title>Association of microbiota in the stomach of Sinanodonta woodiana and its cultured soil</title><title>3 Biotech</title><addtitle>3 Biotech</addtitle><description>The current study aimed to investigate the association of microbial characteristics in the stomach of
Sinanodonta woodiana
(
S. woodiana
) and its cultured soil.
S. woodiana
stomach and its cultured soil were collected in winter 2019. The V3 + V4 regions of the 16S rRNA gene were sequenced to detect microbial diversity. The differences in the dominant species between
S. woodiana
and soil were also discussed. The results showed that the diversity and richness indices in
S. woodiana
were significantly higher than those in cultured soil (
P
< 0.01). At the phylum level, the dominant bacterial community compositions in the two groups were similar and included Proteobacteria, Firmicutes, Bacteroidetes, Cyanobacteria, Fusobacteria, and Acidobacteria. However, the abundance of these phyla was significantly different between the two groups (
P
< 0.05 or
P
< 0.01), and Proteobacteria was the most abundant phylum. At the genus level, a total of 1001 genera were identified in the two groups, of which 890 genera were detected in the cultured soil and 549 were detected in the
S. woodiana
stomach; 452 were unique to the cultured soil, and 111 were unique to the
S. woodiana
stomach. This result indicated great differences in the bacterial genera between the two groups. Moreover, 17 out of the 20 dominant bacterial genera exhibited statistically significant differences between the two groups (
P
< 0.05 or
P
< 0.01).
Cupriavidus
was the absolute dominant genus in the stomach of
S. woodiana
, followed by
Sphingomonas
and
Burkholderia
. The microorganisms in the stomach of
S. woodiana
formed a certain inherent bacterial system and were affected by the environment, which is beneficial to nutrition and health. In conclusion, the bacterial compositions were mostly the same between the stomach of
S. woodiana
and cultured soil, but the relative abundances of the bacterial communities were different. This study will greatly enhance the understanding of the microbial characteristics between the stomach of
S. woodiana
and the cultured environment, and provide guidance for healthy aquaculture in freshwater.</description><subject>Abundance</subject><subject>Agriculture</subject><subject>Aquaculture</subject><subject>Bacteria</subject><subject>Bioinformatics</subject><subject>Biomaterials</subject><subject>Biotechnology</subject><subject>Cancer Research</subject><subject>Chemistry</subject><subject>Chemistry and Materials Science</subject><subject>Composition</subject><subject>Cyanobacteria</subject><subject>Dominant species</subject><subject>Microbiota</subject><subject>Microorganisms</subject><subject>Nutrition</subject><subject>Original</subject><subject>Original Article</subject><subject>Proteobacteria</subject><subject>rRNA 16S</subject><subject>Sinanodonta woodiana</subject><subject>Soil investigations</subject><subject>Soils</subject><subject>Statistical analysis</subject><subject>Stem Cells</subject><subject>Stomach</subject><issn>2190-572X</issn><issn>2190-5738</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNp9kU9LBSEUxSWKildfoJXQps2UXkcdN0FE_yBoUUQ78TlOz5jR0pmib5-vF0UtEsSL93cOeg9Ce5QcUkLkUaYMCK8IkLIZZRWsoW2gilRcsmb9u4aHLbSb8xMpi1OuKNlEWwwECMHUNro_yTlab0YfA44dHrxNce7jaLAPeFw4nMc4GLtYNm99MCG2MZTuW4ytN8FgE1rsx4zt1I9Tci3O0fc7aKMzfXa7X-cM3Z2f3Z1eVtc3F1enJ9eVZUJAJVRjJK8b67iC2tly23RzIy24jkAn61p0LZdi7iQIRSyQhjW17FTLhZSSzdDxyvZ5mg-utS6MyfT6OfnBpHcdjde_O8Ev9GN81bIMj4IoBgdfBim-TC6PevDZur43wcUpa6iBiJoCJwXd_4M-xSmF8rtCUSmVahQUClZUGWPOyXXfj6FEL4PTq-B0CU5_BqeXIrYS5QKHR5d-rP9RfQBP3plw</recordid><startdate>20200701</startdate><enddate>20200701</enddate><creator>Tan, Kai</creator><creator>Xu, Can</creator><creator>Long, Chengxing</creator><general>Springer International Publishing</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-7294-9472</orcidid></search><sort><creationdate>20200701</creationdate><title>Association of microbiota in the stomach of Sinanodonta woodiana and its cultured soil</title><author>Tan, Kai ; Xu, Can ; Long, Chengxing</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3662-698a7548ce5924ecc368fba7c2ef02f7446fd576be72690c2083847f9d567773</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Abundance</topic><topic>Agriculture</topic><topic>Aquaculture</topic><topic>Bacteria</topic><topic>Bioinformatics</topic><topic>Biomaterials</topic><topic>Biotechnology</topic><topic>Cancer Research</topic><topic>Chemistry</topic><topic>Chemistry and Materials Science</topic><topic>Composition</topic><topic>Cyanobacteria</topic><topic>Dominant species</topic><topic>Microbiota</topic><topic>Microorganisms</topic><topic>Nutrition</topic><topic>Original</topic><topic>Original Article</topic><topic>Proteobacteria</topic><topic>rRNA 16S</topic><topic>Sinanodonta woodiana</topic><topic>Soil investigations</topic><topic>Soils</topic><topic>Statistical analysis</topic><topic>Stem Cells</topic><topic>Stomach</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tan, Kai</creatorcontrib><creatorcontrib>Xu, Can</creatorcontrib><creatorcontrib>Long, Chengxing</creatorcontrib><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>3 Biotech</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tan, Kai</au><au>Xu, Can</au><au>Long, Chengxing</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Association of microbiota in the stomach of Sinanodonta woodiana and its cultured soil</atitle><jtitle>3 Biotech</jtitle><stitle>3 Biotech</stitle><date>2020-07-01</date><risdate>2020</risdate><volume>10</volume><issue>7</issue><spage>319</spage><epage>319</epage><pages>319-319</pages><artnum>319</artnum><issn>2190-572X</issn><eissn>2190-5738</eissn><abstract>The current study aimed to investigate the association of microbial characteristics in the stomach of
Sinanodonta woodiana
(
S. woodiana
) and its cultured soil.
S. woodiana
stomach and its cultured soil were collected in winter 2019. The V3 + V4 regions of the 16S rRNA gene were sequenced to detect microbial diversity. The differences in the dominant species between
S. woodiana
and soil were also discussed. The results showed that the diversity and richness indices in
S. woodiana
were significantly higher than those in cultured soil (
P
< 0.01). At the phylum level, the dominant bacterial community compositions in the two groups were similar and included Proteobacteria, Firmicutes, Bacteroidetes, Cyanobacteria, Fusobacteria, and Acidobacteria. However, the abundance of these phyla was significantly different between the two groups (
P
< 0.05 or
P
< 0.01), and Proteobacteria was the most abundant phylum. At the genus level, a total of 1001 genera were identified in the two groups, of which 890 genera were detected in the cultured soil and 549 were detected in the
S. woodiana
stomach; 452 were unique to the cultured soil, and 111 were unique to the
S. woodiana
stomach. This result indicated great differences in the bacterial genera between the two groups. Moreover, 17 out of the 20 dominant bacterial genera exhibited statistically significant differences between the two groups (
P
< 0.05 or
P
< 0.01).
Cupriavidus
was the absolute dominant genus in the stomach of
S. woodiana
, followed by
Sphingomonas
and
Burkholderia
. The microorganisms in the stomach of
S. woodiana
formed a certain inherent bacterial system and were affected by the environment, which is beneficial to nutrition and health. In conclusion, the bacterial compositions were mostly the same between the stomach of
S. woodiana
and cultured soil, but the relative abundances of the bacterial communities were different. This study will greatly enhance the understanding of the microbial characteristics between the stomach of
S. woodiana
and the cultured environment, and provide guidance for healthy aquaculture in freshwater.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>32626639</pmid><doi>10.1007/s13205-020-02313-2</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0002-7294-9472</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 2190-572X |
| ispartof | 3 Biotech, 2020-07, Vol.10 (7), p.319-319, Article 319 |
| issn | 2190-572X 2190-5738 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_7320126 |
| source | EZB-FREE-00999 freely available EZB journals; PubMed Central; SpringerLink Journals - AutoHoldings |
| subjects | Abundance Agriculture Aquaculture Bacteria Bioinformatics Biomaterials Biotechnology Cancer Research Chemistry Chemistry and Materials Science Composition Cyanobacteria Dominant species Microbiota Microorganisms Nutrition Original Original Article Proteobacteria rRNA 16S Sinanodonta woodiana Soil investigations Soils Statistical analysis Stem Cells Stomach |
| title | Association of microbiota in the stomach of Sinanodonta woodiana and its cultured soil |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-05T10%3A46%3A59IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Association%20of%20microbiota%20in%20the%20stomach%20of%20Sinanodonta%20woodiana%20and%20its%20cultured%20soil&rft.jtitle=3%20Biotech&rft.au=Tan,%20Kai&rft.date=2020-07-01&rft.volume=10&rft.issue=7&rft.spage=319&rft.epage=319&rft.pages=319-319&rft.artnum=319&rft.issn=2190-572X&rft.eissn=2190-5738&rft_id=info:doi/10.1007/s13205-020-02313-2&rft_dat=%3Cproquest_pubme%3E2420641250%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2417799892&rft_id=info:pmid/32626639&rfr_iscdi=true |