Expansion of GGC Repeat in GIPC1 Is Associated with Oculopharyngodistal Myopathy

Oculopharyngodistal myopathy (OPDM) is an adult-onset inherited neuromuscular disorder characterized by progressive ptosis, external ophthalmoplegia, and weakness of the masseter, facial, pharyngeal, and distal limb muscles. The myopathological features are presence of rimmed vacuoles (RVs) in the m...

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Veröffentlicht in:American journal of human genetics 2020-06, Vol.106 (6), p.793-804
Hauptverfasser: Deng, Jianwen, Yu, Jiaxi, Li, Pidong, Luan, Xinghua, Cao, Li, Zhao, Juan, Yu, Meng, Zhang, Wei, Lv, He, Xie, Zhiying, Meng, LingChao, Zheng, Yiming, Zhao, Yawen, Gang, Qiang, Wang, Qingqing, Liu, Jing, Zhu, Min, Guo, Xueyu, Su, Yanan, Liang, Yu, Liang, Fan, Hayashi, Tomohiro, Maeda, Meiko Hashimoto, Sato, Tatsuro, Ura, Shigehisa, Oya, Yasushi, Ogasawara, Masashi, Iida, Aritoshi, Nishino, Ichizo, Zhou, Chang, Yan, Chuanzhu, Yuan, Yun, Hong, Daojun, Wang, Zhaoxia
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container_issue 6
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container_title American journal of human genetics
container_volume 106
creator Deng, Jianwen
Yu, Jiaxi
Li, Pidong
Luan, Xinghua
Cao, Li
Zhao, Juan
Yu, Meng
Zhang, Wei
Lv, He
Xie, Zhiying
Meng, LingChao
Zheng, Yiming
Zhao, Yawen
Gang, Qiang
Wang, Qingqing
Liu, Jing
Zhu, Min
Guo, Xueyu
Su, Yanan
Liang, Yu
Liang, Fan
Hayashi, Tomohiro
Maeda, Meiko Hashimoto
Sato, Tatsuro
Ura, Shigehisa
Oya, Yasushi
Ogasawara, Masashi
Iida, Aritoshi
Nishino, Ichizo
Zhou, Chang
Yan, Chuanzhu
Yuan, Yun
Hong, Daojun
Wang, Zhaoxia
description Oculopharyngodistal myopathy (OPDM) is an adult-onset inherited neuromuscular disorder characterized by progressive ptosis, external ophthalmoplegia, and weakness of the masseter, facial, pharyngeal, and distal limb muscles. The myopathological features are presence of rimmed vacuoles (RVs) in the muscle fibers and myopathic changes of differing severity. Inheritance is variable, with either putative autosomal-dominant or autosomal-recessive pattern. Here, using a comprehensive strategy combining whole-genome sequencing (WGS), long-read whole-genome sequencing (LRS), linkage analysis, repeat-primed polymerase chain reaction (RP-PCR), and fluorescence amplicon length analysis polymerase chain reaction (AL-PCR), we identified an abnormal GGC repeat expansion in the 5′ UTR of GIPC1 in one out of four families and three sporadic case subjects from a Chinese OPDM cohort. Expanded GGC repeats were further confirmed as the cause of OPDM in an additional 2 out of 4 families and 6 out of 13 sporadic Chinese individuals with OPDM, as well as 7 out of 194 unrelated Japanese individuals with OPDM. Methylation, qRT-PCR, and western blot analysis indicated that GIPC1 mRNA levels were increased while protein levels were unaltered in OPDM-affected individuals. RNA sequencing indicated p53 signaling, vascular smooth muscle contraction, ubiquitin-mediated proteolysis, and ribosome pathways were involved in the pathogenic mechanisms of OPDM-affected individuals with GGC repeat expansion in GIPC1. This study provides further evidence that OPDM is associated with GGC repeat expansions in distinct genes and highly suggests that expanded GGC repeat units are essential in the pathogenesis of OPDM, regardless of the genes in which the expanded repeats are located.
doi_str_mv 10.1016/j.ajhg.2020.04.011
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The myopathological features are presence of rimmed vacuoles (RVs) in the muscle fibers and myopathic changes of differing severity. Inheritance is variable, with either putative autosomal-dominant or autosomal-recessive pattern. Here, using a comprehensive strategy combining whole-genome sequencing (WGS), long-read whole-genome sequencing (LRS), linkage analysis, repeat-primed polymerase chain reaction (RP-PCR), and fluorescence amplicon length analysis polymerase chain reaction (AL-PCR), we identified an abnormal GGC repeat expansion in the 5′ UTR of GIPC1 in one out of four families and three sporadic case subjects from a Chinese OPDM cohort. Expanded GGC repeats were further confirmed as the cause of OPDM in an additional 2 out of 4 families and 6 out of 13 sporadic Chinese individuals with OPDM, as well as 7 out of 194 unrelated Japanese individuals with OPDM. Methylation, qRT-PCR, and western blot analysis indicated that GIPC1 mRNA levels were increased while protein levels were unaltered in OPDM-affected individuals. RNA sequencing indicated p53 signaling, vascular smooth muscle contraction, ubiquitin-mediated proteolysis, and ribosome pathways were involved in the pathogenic mechanisms of OPDM-affected individuals with GGC repeat expansion in GIPC1. This study provides further evidence that OPDM is associated with GGC repeat expansions in distinct genes and highly suggests that expanded GGC repeat units are essential in the pathogenesis of OPDM, regardless of the genes in which the expanded repeats are located.</description><identifier>ISSN: 0002-9297</identifier><identifier>EISSN: 1537-6605</identifier><identifier>DOI: 10.1016/j.ajhg.2020.04.011</identifier><identifier>PMID: 32413282</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Adaptor Proteins, Signal Transducing - genetics ; Adolescent ; Adult ; Asian Continental Ancestry Group - genetics ; Chromosomes, Human, Pair 19 - genetics ; DNA Methylation ; Female ; GGC repeat expansions ; GIPC1 ; Humans ; intranuclear inclusions ; Lod Score ; Male ; Muscle, Skeletal - diagnostic imaging ; Muscle, Skeletal - pathology ; Muscular Dystrophies - genetics ; Muscular Dystrophies - pathology ; Muscular Dystrophies - physiopathology ; oculopharyngodistal myopathy ; Pedigree ; RNA-Seq ; Trinucleotide Repeat Expansion - genetics ; Tumor Suppressor Protein p53 - metabolism ; Young Adult</subject><ispartof>American journal of human genetics, 2020-06, Vol.106 (6), p.793-804</ispartof><rights>2020 American Society of Human Genetics</rights><rights>Copyright © 2020 American Society of Human Genetics. 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The myopathological features are presence of rimmed vacuoles (RVs) in the muscle fibers and myopathic changes of differing severity. Inheritance is variable, with either putative autosomal-dominant or autosomal-recessive pattern. Here, using a comprehensive strategy combining whole-genome sequencing (WGS), long-read whole-genome sequencing (LRS), linkage analysis, repeat-primed polymerase chain reaction (RP-PCR), and fluorescence amplicon length analysis polymerase chain reaction (AL-PCR), we identified an abnormal GGC repeat expansion in the 5′ UTR of GIPC1 in one out of four families and three sporadic case subjects from a Chinese OPDM cohort. Expanded GGC repeats were further confirmed as the cause of OPDM in an additional 2 out of 4 families and 6 out of 13 sporadic Chinese individuals with OPDM, as well as 7 out of 194 unrelated Japanese individuals with OPDM. Methylation, qRT-PCR, and western blot analysis indicated that GIPC1 mRNA levels were increased while protein levels were unaltered in OPDM-affected individuals. RNA sequencing indicated p53 signaling, vascular smooth muscle contraction, ubiquitin-mediated proteolysis, and ribosome pathways were involved in the pathogenic mechanisms of OPDM-affected individuals with GGC repeat expansion in GIPC1. This study provides further evidence that OPDM is associated with GGC repeat expansions in distinct genes and highly suggests that expanded GGC repeat units are essential in the pathogenesis of OPDM, regardless of the genes in which the expanded repeats are located.</description><subject>Adaptor Proteins, Signal Transducing - genetics</subject><subject>Adolescent</subject><subject>Adult</subject><subject>Asian Continental Ancestry Group - genetics</subject><subject>Chromosomes, Human, Pair 19 - genetics</subject><subject>DNA Methylation</subject><subject>Female</subject><subject>GGC repeat expansions</subject><subject>GIPC1</subject><subject>Humans</subject><subject>intranuclear inclusions</subject><subject>Lod Score</subject><subject>Male</subject><subject>Muscle, Skeletal - diagnostic imaging</subject><subject>Muscle, Skeletal - pathology</subject><subject>Muscular Dystrophies - genetics</subject><subject>Muscular Dystrophies - pathology</subject><subject>Muscular Dystrophies - physiopathology</subject><subject>oculopharyngodistal myopathy</subject><subject>Pedigree</subject><subject>RNA-Seq</subject><subject>Trinucleotide Repeat Expansion - 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Methylation, qRT-PCR, and western blot analysis indicated that GIPC1 mRNA levels were increased while protein levels were unaltered in OPDM-affected individuals. RNA sequencing indicated p53 signaling, vascular smooth muscle contraction, ubiquitin-mediated proteolysis, and ribosome pathways were involved in the pathogenic mechanisms of OPDM-affected individuals with GGC repeat expansion in GIPC1. This study provides further evidence that OPDM is associated with GGC repeat expansions in distinct genes and highly suggests that expanded GGC repeat units are essential in the pathogenesis of OPDM, regardless of the genes in which the expanded repeats are located.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>32413282</pmid><doi>10.1016/j.ajhg.2020.04.011</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0003-1206-1778</orcidid><oa>free_for_read</oa></addata></record>
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subjects Adaptor Proteins, Signal Transducing - genetics
Adolescent
Adult
Asian Continental Ancestry Group - genetics
Chromosomes, Human, Pair 19 - genetics
DNA Methylation
Female
GGC repeat expansions
GIPC1
Humans
intranuclear inclusions
Lod Score
Male
Muscle, Skeletal - diagnostic imaging
Muscle, Skeletal - pathology
Muscular Dystrophies - genetics
Muscular Dystrophies - pathology
Muscular Dystrophies - physiopathology
oculopharyngodistal myopathy
Pedigree
RNA-Seq
Trinucleotide Repeat Expansion - genetics
Tumor Suppressor Protein p53 - metabolism
Young Adult
title Expansion of GGC Repeat in GIPC1 Is Associated with Oculopharyngodistal Myopathy
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