Expansion of GGC Repeat in GIPC1 Is Associated with Oculopharyngodistal Myopathy
Oculopharyngodistal myopathy (OPDM) is an adult-onset inherited neuromuscular disorder characterized by progressive ptosis, external ophthalmoplegia, and weakness of the masseter, facial, pharyngeal, and distal limb muscles. The myopathological features are presence of rimmed vacuoles (RVs) in the m...
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creator | Deng, Jianwen Yu, Jiaxi Li, Pidong Luan, Xinghua Cao, Li Zhao, Juan Yu, Meng Zhang, Wei Lv, He Xie, Zhiying Meng, LingChao Zheng, Yiming Zhao, Yawen Gang, Qiang Wang, Qingqing Liu, Jing Zhu, Min Guo, Xueyu Su, Yanan Liang, Yu Liang, Fan Hayashi, Tomohiro Maeda, Meiko Hashimoto Sato, Tatsuro Ura, Shigehisa Oya, Yasushi Ogasawara, Masashi Iida, Aritoshi Nishino, Ichizo Zhou, Chang Yan, Chuanzhu Yuan, Yun Hong, Daojun Wang, Zhaoxia |
description | Oculopharyngodistal myopathy (OPDM) is an adult-onset inherited neuromuscular disorder characterized by progressive ptosis, external ophthalmoplegia, and weakness of the masseter, facial, pharyngeal, and distal limb muscles. The myopathological features are presence of rimmed vacuoles (RVs) in the muscle fibers and myopathic changes of differing severity. Inheritance is variable, with either putative autosomal-dominant or autosomal-recessive pattern. Here, using a comprehensive strategy combining whole-genome sequencing (WGS), long-read whole-genome sequencing (LRS), linkage analysis, repeat-primed polymerase chain reaction (RP-PCR), and fluorescence amplicon length analysis polymerase chain reaction (AL-PCR), we identified an abnormal GGC repeat expansion in the 5′ UTR of GIPC1 in one out of four families and three sporadic case subjects from a Chinese OPDM cohort. Expanded GGC repeats were further confirmed as the cause of OPDM in an additional 2 out of 4 families and 6 out of 13 sporadic Chinese individuals with OPDM, as well as 7 out of 194 unrelated Japanese individuals with OPDM. Methylation, qRT-PCR, and western blot analysis indicated that GIPC1 mRNA levels were increased while protein levels were unaltered in OPDM-affected individuals. RNA sequencing indicated p53 signaling, vascular smooth muscle contraction, ubiquitin-mediated proteolysis, and ribosome pathways were involved in the pathogenic mechanisms of OPDM-affected individuals with GGC repeat expansion in GIPC1. This study provides further evidence that OPDM is associated with GGC repeat expansions in distinct genes and highly suggests that expanded GGC repeat units are essential in the pathogenesis of OPDM, regardless of the genes in which the expanded repeats are located. |
doi_str_mv | 10.1016/j.ajhg.2020.04.011 |
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The myopathological features are presence of rimmed vacuoles (RVs) in the muscle fibers and myopathic changes of differing severity. Inheritance is variable, with either putative autosomal-dominant or autosomal-recessive pattern. Here, using a comprehensive strategy combining whole-genome sequencing (WGS), long-read whole-genome sequencing (LRS), linkage analysis, repeat-primed polymerase chain reaction (RP-PCR), and fluorescence amplicon length analysis polymerase chain reaction (AL-PCR), we identified an abnormal GGC repeat expansion in the 5′ UTR of GIPC1 in one out of four families and three sporadic case subjects from a Chinese OPDM cohort. Expanded GGC repeats were further confirmed as the cause of OPDM in an additional 2 out of 4 families and 6 out of 13 sporadic Chinese individuals with OPDM, as well as 7 out of 194 unrelated Japanese individuals with OPDM. Methylation, qRT-PCR, and western blot analysis indicated that GIPC1 mRNA levels were increased while protein levels were unaltered in OPDM-affected individuals. RNA sequencing indicated p53 signaling, vascular smooth muscle contraction, ubiquitin-mediated proteolysis, and ribosome pathways were involved in the pathogenic mechanisms of OPDM-affected individuals with GGC repeat expansion in GIPC1. This study provides further evidence that OPDM is associated with GGC repeat expansions in distinct genes and highly suggests that expanded GGC repeat units are essential in the pathogenesis of OPDM, regardless of the genes in which the expanded repeats are located.</description><identifier>ISSN: 0002-9297</identifier><identifier>EISSN: 1537-6605</identifier><identifier>DOI: 10.1016/j.ajhg.2020.04.011</identifier><identifier>PMID: 32413282</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Adaptor Proteins, Signal Transducing - genetics ; Adolescent ; Adult ; Asian Continental Ancestry Group - genetics ; Chromosomes, Human, Pair 19 - genetics ; DNA Methylation ; Female ; GGC repeat expansions ; GIPC1 ; Humans ; intranuclear inclusions ; Lod Score ; Male ; Muscle, Skeletal - diagnostic imaging ; Muscle, Skeletal - pathology ; Muscular Dystrophies - genetics ; Muscular Dystrophies - pathology ; Muscular Dystrophies - physiopathology ; oculopharyngodistal myopathy ; Pedigree ; RNA-Seq ; Trinucleotide Repeat Expansion - genetics ; Tumor Suppressor Protein p53 - metabolism ; Young Adult</subject><ispartof>American journal of human genetics, 2020-06, Vol.106 (6), p.793-804</ispartof><rights>2020 American Society of Human Genetics</rights><rights>Copyright © 2020 American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.</rights><rights>2020 American Society of Human Genetics. 2020 American Society of Human Genetics</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c455t-ef091116f61a22658ad9e7e4ae845da3d29762ff4102e4a7180608de66419f623</citedby><cites>FETCH-LOGICAL-c455t-ef091116f61a22658ad9e7e4ae845da3d29762ff4102e4a7180608de66419f623</cites><orcidid>0000-0003-1206-1778</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7273532/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0002929720301208$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,3537,27901,27902,53766,53768,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32413282$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Deng, Jianwen</creatorcontrib><creatorcontrib>Yu, Jiaxi</creatorcontrib><creatorcontrib>Li, Pidong</creatorcontrib><creatorcontrib>Luan, Xinghua</creatorcontrib><creatorcontrib>Cao, Li</creatorcontrib><creatorcontrib>Zhao, Juan</creatorcontrib><creatorcontrib>Yu, Meng</creatorcontrib><creatorcontrib>Zhang, Wei</creatorcontrib><creatorcontrib>Lv, He</creatorcontrib><creatorcontrib>Xie, Zhiying</creatorcontrib><creatorcontrib>Meng, LingChao</creatorcontrib><creatorcontrib>Zheng, Yiming</creatorcontrib><creatorcontrib>Zhao, Yawen</creatorcontrib><creatorcontrib>Gang, Qiang</creatorcontrib><creatorcontrib>Wang, Qingqing</creatorcontrib><creatorcontrib>Liu, Jing</creatorcontrib><creatorcontrib>Zhu, Min</creatorcontrib><creatorcontrib>Guo, Xueyu</creatorcontrib><creatorcontrib>Su, Yanan</creatorcontrib><creatorcontrib>Liang, Yu</creatorcontrib><creatorcontrib>Liang, Fan</creatorcontrib><creatorcontrib>Hayashi, Tomohiro</creatorcontrib><creatorcontrib>Maeda, Meiko Hashimoto</creatorcontrib><creatorcontrib>Sato, Tatsuro</creatorcontrib><creatorcontrib>Ura, Shigehisa</creatorcontrib><creatorcontrib>Oya, Yasushi</creatorcontrib><creatorcontrib>Ogasawara, Masashi</creatorcontrib><creatorcontrib>Iida, Aritoshi</creatorcontrib><creatorcontrib>Nishino, Ichizo</creatorcontrib><creatorcontrib>Zhou, Chang</creatorcontrib><creatorcontrib>Yan, Chuanzhu</creatorcontrib><creatorcontrib>Yuan, Yun</creatorcontrib><creatorcontrib>Hong, Daojun</creatorcontrib><creatorcontrib>Wang, Zhaoxia</creatorcontrib><title>Expansion of GGC Repeat in GIPC1 Is Associated with Oculopharyngodistal Myopathy</title><title>American journal of human genetics</title><addtitle>Am J Hum Genet</addtitle><description>Oculopharyngodistal myopathy (OPDM) is an adult-onset inherited neuromuscular disorder characterized by progressive ptosis, external ophthalmoplegia, and weakness of the masseter, facial, pharyngeal, and distal limb muscles. The myopathological features are presence of rimmed vacuoles (RVs) in the muscle fibers and myopathic changes of differing severity. Inheritance is variable, with either putative autosomal-dominant or autosomal-recessive pattern. Here, using a comprehensive strategy combining whole-genome sequencing (WGS), long-read whole-genome sequencing (LRS), linkage analysis, repeat-primed polymerase chain reaction (RP-PCR), and fluorescence amplicon length analysis polymerase chain reaction (AL-PCR), we identified an abnormal GGC repeat expansion in the 5′ UTR of GIPC1 in one out of four families and three sporadic case subjects from a Chinese OPDM cohort. Expanded GGC repeats were further confirmed as the cause of OPDM in an additional 2 out of 4 families and 6 out of 13 sporadic Chinese individuals with OPDM, as well as 7 out of 194 unrelated Japanese individuals with OPDM. Methylation, qRT-PCR, and western blot analysis indicated that GIPC1 mRNA levels were increased while protein levels were unaltered in OPDM-affected individuals. RNA sequencing indicated p53 signaling, vascular smooth muscle contraction, ubiquitin-mediated proteolysis, and ribosome pathways were involved in the pathogenic mechanisms of OPDM-affected individuals with GGC repeat expansion in GIPC1. This study provides further evidence that OPDM is associated with GGC repeat expansions in distinct genes and highly suggests that expanded GGC repeat units are essential in the pathogenesis of OPDM, regardless of the genes in which the expanded repeats are located.</description><subject>Adaptor Proteins, Signal Transducing - genetics</subject><subject>Adolescent</subject><subject>Adult</subject><subject>Asian Continental Ancestry Group - genetics</subject><subject>Chromosomes, Human, Pair 19 - genetics</subject><subject>DNA Methylation</subject><subject>Female</subject><subject>GGC repeat expansions</subject><subject>GIPC1</subject><subject>Humans</subject><subject>intranuclear inclusions</subject><subject>Lod Score</subject><subject>Male</subject><subject>Muscle, Skeletal - diagnostic imaging</subject><subject>Muscle, Skeletal - pathology</subject><subject>Muscular Dystrophies - genetics</subject><subject>Muscular Dystrophies - pathology</subject><subject>Muscular Dystrophies - physiopathology</subject><subject>oculopharyngodistal myopathy</subject><subject>Pedigree</subject><subject>RNA-Seq</subject><subject>Trinucleotide Repeat Expansion - genetics</subject><subject>Tumor Suppressor Protein p53 - metabolism</subject><subject>Young Adult</subject><issn>0002-9297</issn><issn>1537-6605</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kFFLwzAUhYMobk7_gA-SP9B6k7ZpCyKMMedgsiH6HGJzu2ZsTWnqdP_ejOnQF58CN-ece-5HyDWDkAETt6tQraplyIFDCHEIjJ2QPkuiNBACklPSBwAe5DxPe-TCuRV4RQbROelFPGYRz3ifLMafjaqdsTW1JZ1MRvQZG1QdNTWdTBcjRqeODp2zhVEdavphuorOi_e1bSrV7uql1cZ1ak2fdrZRXbW7JGelWju8-n4H5PVh_DJ6DGbzyXQ0nAVFnCRdgCXkjDFRCqY4F0mmdI4pxgqzONEq0r614GUZM-B-mvriAjKNQsQsLwWPBuT-kNu8v21QF1h3rVrLpjUb30taZeTfn9pUcmm3MuVplET7AH4IKFrrXIvl0ctA7vnKldzzlXu-EmLp6XnTze-tR8sPUC-4OwjQ37412EpXGKwL1KbFopPamv_yvwBu4owQ</recordid><startdate>20200604</startdate><enddate>20200604</enddate><creator>Deng, Jianwen</creator><creator>Yu, Jiaxi</creator><creator>Li, Pidong</creator><creator>Luan, Xinghua</creator><creator>Cao, Li</creator><creator>Zhao, Juan</creator><creator>Yu, Meng</creator><creator>Zhang, Wei</creator><creator>Lv, He</creator><creator>Xie, Zhiying</creator><creator>Meng, LingChao</creator><creator>Zheng, Yiming</creator><creator>Zhao, Yawen</creator><creator>Gang, Qiang</creator><creator>Wang, Qingqing</creator><creator>Liu, Jing</creator><creator>Zhu, Min</creator><creator>Guo, Xueyu</creator><creator>Su, Yanan</creator><creator>Liang, Yu</creator><creator>Liang, Fan</creator><creator>Hayashi, Tomohiro</creator><creator>Maeda, Meiko Hashimoto</creator><creator>Sato, Tatsuro</creator><creator>Ura, Shigehisa</creator><creator>Oya, Yasushi</creator><creator>Ogasawara, Masashi</creator><creator>Iida, Aritoshi</creator><creator>Nishino, Ichizo</creator><creator>Zhou, Chang</creator><creator>Yan, Chuanzhu</creator><creator>Yuan, Yun</creator><creator>Hong, Daojun</creator><creator>Wang, Zhaoxia</creator><general>Elsevier Inc</general><general>Elsevier</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-1206-1778</orcidid></search><sort><creationdate>20200604</creationdate><title>Expansion of GGC Repeat in GIPC1 Is Associated with Oculopharyngodistal Myopathy</title><author>Deng, Jianwen ; Yu, Jiaxi ; Li, Pidong ; Luan, Xinghua ; Cao, Li ; Zhao, Juan ; Yu, Meng ; Zhang, Wei ; Lv, He ; Xie, Zhiying ; Meng, LingChao ; Zheng, Yiming ; Zhao, Yawen ; Gang, Qiang ; Wang, Qingqing ; Liu, Jing ; Zhu, Min ; Guo, Xueyu ; Su, Yanan ; Liang, Yu ; Liang, Fan ; Hayashi, Tomohiro ; Maeda, Meiko Hashimoto ; Sato, Tatsuro ; Ura, Shigehisa ; Oya, Yasushi ; Ogasawara, Masashi ; Iida, Aritoshi ; Nishino, Ichizo ; Zhou, Chang ; Yan, Chuanzhu ; Yuan, Yun ; Hong, Daojun ; Wang, Zhaoxia</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c455t-ef091116f61a22658ad9e7e4ae845da3d29762ff4102e4a7180608de66419f623</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Adaptor Proteins, Signal Transducing - 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The myopathological features are presence of rimmed vacuoles (RVs) in the muscle fibers and myopathic changes of differing severity. Inheritance is variable, with either putative autosomal-dominant or autosomal-recessive pattern. Here, using a comprehensive strategy combining whole-genome sequencing (WGS), long-read whole-genome sequencing (LRS), linkage analysis, repeat-primed polymerase chain reaction (RP-PCR), and fluorescence amplicon length analysis polymerase chain reaction (AL-PCR), we identified an abnormal GGC repeat expansion in the 5′ UTR of GIPC1 in one out of four families and three sporadic case subjects from a Chinese OPDM cohort. Expanded GGC repeats were further confirmed as the cause of OPDM in an additional 2 out of 4 families and 6 out of 13 sporadic Chinese individuals with OPDM, as well as 7 out of 194 unrelated Japanese individuals with OPDM. Methylation, qRT-PCR, and western blot analysis indicated that GIPC1 mRNA levels were increased while protein levels were unaltered in OPDM-affected individuals. RNA sequencing indicated p53 signaling, vascular smooth muscle contraction, ubiquitin-mediated proteolysis, and ribosome pathways were involved in the pathogenic mechanisms of OPDM-affected individuals with GGC repeat expansion in GIPC1. This study provides further evidence that OPDM is associated with GGC repeat expansions in distinct genes and highly suggests that expanded GGC repeat units are essential in the pathogenesis of OPDM, regardless of the genes in which the expanded repeats are located.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>32413282</pmid><doi>10.1016/j.ajhg.2020.04.011</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0003-1206-1778</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Adaptor Proteins, Signal Transducing - genetics Adolescent Adult Asian Continental Ancestry Group - genetics Chromosomes, Human, Pair 19 - genetics DNA Methylation Female GGC repeat expansions GIPC1 Humans intranuclear inclusions Lod Score Male Muscle, Skeletal - diagnostic imaging Muscle, Skeletal - pathology Muscular Dystrophies - genetics Muscular Dystrophies - pathology Muscular Dystrophies - physiopathology oculopharyngodistal myopathy Pedigree RNA-Seq Trinucleotide Repeat Expansion - genetics Tumor Suppressor Protein p53 - metabolism Young Adult |
title | Expansion of GGC Repeat in GIPC1 Is Associated with Oculopharyngodistal Myopathy |
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