Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019

BackgroundCarbapenemase-producing are increasing worldwide. In recent years, an increase in OXA-244-producing isolates has been seen in the national surveillance of carbapenemase-producing organisms in Denmark.AimMolecular characterisation and epidemiological investigation of OXA-244-producing isola...

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Veröffentlicht in:Euro surveillance : bulletin européen sur les maladies transmissibles 2020-05, Vol.25 (18), p.1
Hauptverfasser: Hammerum, Anette M, Porsbo, Lone Jannok, Hansen, Frank, Roer, Louise, Kaya, Hülya, Henius, Anna, Møller, Karina Lauenborg, Justesen, Ulrik S, Søes, Lillian, Røder, Bent L, Thomsen, Philip K, Wang, Mikala, Søndergaard, Turid Snekloth, Holzknecht, Barbara Juliane, Østergaard, Claus, Kjerulf, Anne, Kristensen, Brian, Hasman, Henrik
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container_issue 18
container_start_page 1
container_title Euro surveillance : bulletin européen sur les maladies transmissibles
container_volume 25
creator Hammerum, Anette M
Porsbo, Lone Jannok
Hansen, Frank
Roer, Louise
Kaya, Hülya
Henius, Anna
Møller, Karina Lauenborg
Justesen, Ulrik S
Søes, Lillian
Røder, Bent L
Thomsen, Philip K
Wang, Mikala
Søndergaard, Turid Snekloth
Holzknecht, Barbara Juliane
Østergaard, Claus
Kjerulf, Anne
Kristensen, Brian
Hasman, Henrik
description BackgroundCarbapenemase-producing are increasing worldwide. In recent years, an increase in OXA-244-producing isolates has been seen in the national surveillance of carbapenemase-producing organisms in Denmark.AimMolecular characterisation and epidemiological investigation of OXA-244-producing isolates from January 2016 to August 2019.MethodsFor the epidemiological investigation, data from the Danish National Patient Registry and the Danish register of civil registration were used together with data from phone interviews with patients. Isolates were characterised by analysing whole genome sequences for resistance genes, MLST and core genome MLST (cgMLST).ResultsIn total, 24 OXA-244-producing isolates were obtained from 23 patients. Among the 23 patients, 13 reported travelling before detection of the isolates, with seven having visited countries in Northern Africa. Fifteen isolates also carried an extended-spectrum beta-lactamase gene and one had a plasmid-encoded AmpC gene. The most common detected sequence type (ST) was ST38, followed by ST69, ST167, ST10, ST361 and ST3268. Three clonal clusters were detected by cgMLST, but none of these clusters seemed to reflect nosocomial transmission in Denmark.ConclusionImport of OXA-244 isolates from travelling abroad seems likely for the majority of cases. Community sources were also possible, as many of the patients had no history of hospitalisation and many of the isolates belonged to STs that are present in the community. It was not possible to point at a single country or a community source as risk factor for acquiring OXA-244-producing .
doi_str_mv 10.2807/1560-7917.ES.2020.25.18.1900742
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In recent years, an increase in OXA-244-producing isolates has been seen in the national surveillance of carbapenemase-producing organisms in Denmark.AimMolecular characterisation and epidemiological investigation of OXA-244-producing isolates from January 2016 to August 2019.MethodsFor the epidemiological investigation, data from the Danish National Patient Registry and the Danish register of civil registration were used together with data from phone interviews with patients. Isolates were characterised by analysing whole genome sequences for resistance genes, MLST and core genome MLST (cgMLST).ResultsIn total, 24 OXA-244-producing isolates were obtained from 23 patients. Among the 23 patients, 13 reported travelling before detection of the isolates, with seven having visited countries in Northern Africa. Fifteen isolates also carried an extended-spectrum beta-lactamase gene and one had a plasmid-encoded AmpC gene. The most common detected sequence type (ST) was ST38, followed by ST69, ST167, ST10, ST361 and ST3268. Three clonal clusters were detected by cgMLST, but none of these clusters seemed to reflect nosocomial transmission in Denmark.ConclusionImport of OXA-244 isolates from travelling abroad seems likely for the majority of cases. Community sources were also possible, as many of the patients had no history of hospitalisation and many of the isolates belonged to STs that are present in the community. It was not possible to point at a single country or a community source as risk factor for acquiring OXA-244-producing .</description><identifier>ISSN: 1560-7917</identifier><identifier>ISSN: 1025-496X</identifier><identifier>EISSN: 1560-7917</identifier><identifier>DOI: 10.2807/1560-7917.ES.2020.25.18.1900742</identifier><identifier>PMID: 32400363</identifier><language>eng</language><publisher>Sweden: Centre Europeen pour la Surveillance Epidemiologique du SIDA (European Centre for the Epidemiological Monitoring of AIDS)</publisher><subject>Adult ; Aged ; Aged, 80 and over ; Anti-Bacterial Agents - therapeutic use ; Bacterial infections ; beta-Lactamases - genetics ; Community-Acquired Infections - epidemiology ; Community-Acquired Infections - microbiology ; Cross Infection - epidemiology ; Cross Infection - microbiology ; Denmark - epidemiology ; E coli ; Epidemiology ; Escherichia coli - enzymology ; Escherichia coli - genetics ; Escherichia coli - isolation &amp; purification ; Escherichia coli Infections - drug therapy ; Escherichia coli Infections - epidemiology ; Escherichia coli Infections - microbiology ; Genetic diversity ; Genomes ; Health surveillance ; Humans ; Middle Aged ; Molecular Epidemiology ; Multilocus Sequence Typing ; Plasmids - genetics ; Polymerase Chain Reaction ; Surveillance ; Travel ; Whole Genome Sequencing</subject><ispartof>Euro surveillance : bulletin européen sur les maladies transmissibles, 2020-05, Vol.25 (18), p.1</ispartof><rights>Copyright Centre Europeen pour la Surveillance Epidemiologique du SIDA (European Centre for the Epidemiological Monitoring of AIDS) May 7, 2020</rights><rights>This article is copyright of the authors or their affiliated institutions, 2020. 2020 The authors or their affiliated institutions</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c469t-1ebf711cf2712a7ee48d252e68b541312e07f3e99421202d3ddb1b53186f91653</citedby><cites>FETCH-LOGICAL-c469t-1ebf711cf2712a7ee48d252e68b541312e07f3e99421202d3ddb1b53186f91653</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7219033/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7219033/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32400363$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Hammerum, Anette M</creatorcontrib><creatorcontrib>Porsbo, Lone Jannok</creatorcontrib><creatorcontrib>Hansen, Frank</creatorcontrib><creatorcontrib>Roer, Louise</creatorcontrib><creatorcontrib>Kaya, Hülya</creatorcontrib><creatorcontrib>Henius, Anna</creatorcontrib><creatorcontrib>Møller, Karina Lauenborg</creatorcontrib><creatorcontrib>Justesen, Ulrik S</creatorcontrib><creatorcontrib>Søes, Lillian</creatorcontrib><creatorcontrib>Røder, Bent L</creatorcontrib><creatorcontrib>Thomsen, Philip K</creatorcontrib><creatorcontrib>Wang, Mikala</creatorcontrib><creatorcontrib>Søndergaard, Turid Snekloth</creatorcontrib><creatorcontrib>Holzknecht, Barbara Juliane</creatorcontrib><creatorcontrib>Østergaard, Claus</creatorcontrib><creatorcontrib>Kjerulf, Anne</creatorcontrib><creatorcontrib>Kristensen, Brian</creatorcontrib><creatorcontrib>Hasman, Henrik</creatorcontrib><title>Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019</title><title>Euro surveillance : bulletin européen sur les maladies transmissibles</title><addtitle>Euro Surveill</addtitle><description>BackgroundCarbapenemase-producing are increasing worldwide. In recent years, an increase in OXA-244-producing isolates has been seen in the national surveillance of carbapenemase-producing organisms in Denmark.AimMolecular characterisation and epidemiological investigation of OXA-244-producing isolates from January 2016 to August 2019.MethodsFor the epidemiological investigation, data from the Danish National Patient Registry and the Danish register of civil registration were used together with data from phone interviews with patients. Isolates were characterised by analysing whole genome sequences for resistance genes, MLST and core genome MLST (cgMLST).ResultsIn total, 24 OXA-244-producing isolates were obtained from 23 patients. Among the 23 patients, 13 reported travelling before detection of the isolates, with seven having visited countries in Northern Africa. Fifteen isolates also carried an extended-spectrum beta-lactamase gene and one had a plasmid-encoded AmpC gene. The most common detected sequence type (ST) was ST38, followed by ST69, ST167, ST10, ST361 and ST3268. Three clonal clusters were detected by cgMLST, but none of these clusters seemed to reflect nosocomial transmission in Denmark.ConclusionImport of OXA-244 isolates from travelling abroad seems likely for the majority of cases. Community sources were also possible, as many of the patients had no history of hospitalisation and many of the isolates belonged to STs that are present in the community. It was not possible to point at a single country or a community source as risk factor for acquiring OXA-244-producing .</description><subject>Adult</subject><subject>Aged</subject><subject>Aged, 80 and over</subject><subject>Anti-Bacterial Agents - therapeutic use</subject><subject>Bacterial infections</subject><subject>beta-Lactamases - genetics</subject><subject>Community-Acquired Infections - epidemiology</subject><subject>Community-Acquired Infections - microbiology</subject><subject>Cross Infection - epidemiology</subject><subject>Cross Infection - microbiology</subject><subject>Denmark - epidemiology</subject><subject>E coli</subject><subject>Epidemiology</subject><subject>Escherichia coli - enzymology</subject><subject>Escherichia coli - genetics</subject><subject>Escherichia coli - isolation &amp; purification</subject><subject>Escherichia coli Infections - drug therapy</subject><subject>Escherichia coli Infections - epidemiology</subject><subject>Escherichia coli Infections - microbiology</subject><subject>Genetic diversity</subject><subject>Genomes</subject><subject>Health surveillance</subject><subject>Humans</subject><subject>Middle Aged</subject><subject>Molecular Epidemiology</subject><subject>Multilocus Sequence Typing</subject><subject>Plasmids - genetics</subject><subject>Polymerase Chain Reaction</subject><subject>Surveillance</subject><subject>Travel</subject><subject>Whole Genome Sequencing</subject><issn>1560-7917</issn><issn>1025-496X</issn><issn>1560-7917</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdkUtv1DAUhS0EomXgLyBLLGDRBL_y2oBGZVpAlbqYVmJnOc5NxiVjD3Y8Upf88zrqdFRY-XV8dM_5EPpISc5qUn2mRUmyqqFVvlrnjLB0XeS0zmlDSCXYC3R6VLx8tj9Bb0K4I0Rw0rDX6IQzQQgv-Sn6u45-D2YcldWAXY-vfy0zJkS2866L2tgBr4LegDd6YxTWbjRY2Q7DznSwNW50g9HY2D2EyQxqMs7OLloFCGf4G9it8r_P8E9lo_L3mBFa4snhZRximOZj8xa96tUY4N1hXaDbi9XN-ffs6vryx_nyKtOibKaMQttXlOqeVZSpCkDUHSsYlHVbCMopA1L1HJpGMJqK6XjXtbQtOK3LvqFlwRfoy6PvLrZb6DTYyatR7rxJI95Lp4z898WajRzcXlYstct5Mvh0MPDuT0x55dYEDXN14GKQqVMmki71ukAf_pPeuehtijerirKoWVkn1ddHlfYuBA_9cRhK5IxbzgDlDFCu1nLGLVkhaS0PuJPD--eZjv-f-PIHyyqlzg</recordid><startdate>20200507</startdate><enddate>20200507</enddate><creator>Hammerum, Anette M</creator><creator>Porsbo, Lone Jannok</creator><creator>Hansen, Frank</creator><creator>Roer, Louise</creator><creator>Kaya, Hülya</creator><creator>Henius, Anna</creator><creator>Møller, Karina Lauenborg</creator><creator>Justesen, Ulrik S</creator><creator>Søes, Lillian</creator><creator>Røder, Bent L</creator><creator>Thomsen, Philip K</creator><creator>Wang, Mikala</creator><creator>Søndergaard, Turid Snekloth</creator><creator>Holzknecht, Barbara Juliane</creator><creator>Østergaard, Claus</creator><creator>Kjerulf, Anne</creator><creator>Kristensen, Brian</creator><creator>Hasman, Henrik</creator><general>Centre Europeen pour la Surveillance Epidemiologique du SIDA (European Centre for the Epidemiological Monitoring of AIDS)</general><general>European Centre for Disease Prevention and Control (ECDC)</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20200507</creationdate><title>Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019</title><author>Hammerum, Anette M ; Porsbo, Lone Jannok ; Hansen, Frank ; Roer, Louise ; Kaya, Hülya ; Henius, Anna ; Møller, Karina Lauenborg ; Justesen, Ulrik S ; Søes, Lillian ; Røder, Bent L ; Thomsen, Philip K ; Wang, Mikala ; Søndergaard, Turid Snekloth ; Holzknecht, Barbara Juliane ; Østergaard, Claus ; Kjerulf, Anne ; Kristensen, Brian ; Hasman, Henrik</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c469t-1ebf711cf2712a7ee48d252e68b541312e07f3e99421202d3ddb1b53186f91653</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Adult</topic><topic>Aged</topic><topic>Aged, 80 and over</topic><topic>Anti-Bacterial Agents - therapeutic use</topic><topic>Bacterial infections</topic><topic>beta-Lactamases - genetics</topic><topic>Community-Acquired Infections - epidemiology</topic><topic>Community-Acquired Infections - microbiology</topic><topic>Cross Infection - epidemiology</topic><topic>Cross Infection - microbiology</topic><topic>Denmark - epidemiology</topic><topic>E coli</topic><topic>Epidemiology</topic><topic>Escherichia coli - enzymology</topic><topic>Escherichia coli - genetics</topic><topic>Escherichia coli - isolation &amp; purification</topic><topic>Escherichia coli Infections - drug therapy</topic><topic>Escherichia coli Infections - epidemiology</topic><topic>Escherichia coli Infections - microbiology</topic><topic>Genetic diversity</topic><topic>Genomes</topic><topic>Health surveillance</topic><topic>Humans</topic><topic>Middle Aged</topic><topic>Molecular Epidemiology</topic><topic>Multilocus Sequence Typing</topic><topic>Plasmids - genetics</topic><topic>Polymerase Chain Reaction</topic><topic>Surveillance</topic><topic>Travel</topic><topic>Whole Genome Sequencing</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Hammerum, Anette M</creatorcontrib><creatorcontrib>Porsbo, Lone Jannok</creatorcontrib><creatorcontrib>Hansen, Frank</creatorcontrib><creatorcontrib>Roer, Louise</creatorcontrib><creatorcontrib>Kaya, Hülya</creatorcontrib><creatorcontrib>Henius, Anna</creatorcontrib><creatorcontrib>Møller, Karina Lauenborg</creatorcontrib><creatorcontrib>Justesen, Ulrik S</creatorcontrib><creatorcontrib>Søes, Lillian</creatorcontrib><creatorcontrib>Røder, Bent L</creatorcontrib><creatorcontrib>Thomsen, Philip K</creatorcontrib><creatorcontrib>Wang, Mikala</creatorcontrib><creatorcontrib>Søndergaard, Turid Snekloth</creatorcontrib><creatorcontrib>Holzknecht, Barbara Juliane</creatorcontrib><creatorcontrib>Østergaard, Claus</creatorcontrib><creatorcontrib>Kjerulf, Anne</creatorcontrib><creatorcontrib>Kristensen, Brian</creatorcontrib><creatorcontrib>Hasman, Henrik</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Euro surveillance : bulletin européen sur les maladies transmissibles</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Hammerum, Anette M</au><au>Porsbo, Lone Jannok</au><au>Hansen, Frank</au><au>Roer, Louise</au><au>Kaya, Hülya</au><au>Henius, Anna</au><au>Møller, Karina Lauenborg</au><au>Justesen, Ulrik S</au><au>Søes, Lillian</au><au>Røder, Bent L</au><au>Thomsen, Philip K</au><au>Wang, Mikala</au><au>Søndergaard, Turid Snekloth</au><au>Holzknecht, Barbara Juliane</au><au>Østergaard, Claus</au><au>Kjerulf, Anne</au><au>Kristensen, Brian</au><au>Hasman, Henrik</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019</atitle><jtitle>Euro surveillance : bulletin européen sur les maladies transmissibles</jtitle><addtitle>Euro Surveill</addtitle><date>2020-05-07</date><risdate>2020</risdate><volume>25</volume><issue>18</issue><spage>1</spage><pages>1-</pages><issn>1560-7917</issn><issn>1025-496X</issn><eissn>1560-7917</eissn><abstract>BackgroundCarbapenemase-producing are increasing worldwide. In recent years, an increase in OXA-244-producing isolates has been seen in the national surveillance of carbapenemase-producing organisms in Denmark.AimMolecular characterisation and epidemiological investigation of OXA-244-producing isolates from January 2016 to August 2019.MethodsFor the epidemiological investigation, data from the Danish National Patient Registry and the Danish register of civil registration were used together with data from phone interviews with patients. Isolates were characterised by analysing whole genome sequences for resistance genes, MLST and core genome MLST (cgMLST).ResultsIn total, 24 OXA-244-producing isolates were obtained from 23 patients. Among the 23 patients, 13 reported travelling before detection of the isolates, with seven having visited countries in Northern Africa. Fifteen isolates also carried an extended-spectrum beta-lactamase gene and one had a plasmid-encoded AmpC gene. The most common detected sequence type (ST) was ST38, followed by ST69, ST167, ST10, ST361 and ST3268. Three clonal clusters were detected by cgMLST, but none of these clusters seemed to reflect nosocomial transmission in Denmark.ConclusionImport of OXA-244 isolates from travelling abroad seems likely for the majority of cases. Community sources were also possible, as many of the patients had no history of hospitalisation and many of the isolates belonged to STs that are present in the community. It was not possible to point at a single country or a community source as risk factor for acquiring OXA-244-producing .</abstract><cop>Sweden</cop><pub>Centre Europeen pour la Surveillance Epidemiologique du SIDA (European Centre for the Epidemiological Monitoring of AIDS)</pub><pmid>32400363</pmid><doi>10.2807/1560-7917.ES.2020.25.18.1900742</doi><oa>free_for_read</oa></addata></record>
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subjects Adult
Aged
Aged, 80 and over
Anti-Bacterial Agents - therapeutic use
Bacterial infections
beta-Lactamases - genetics
Community-Acquired Infections - epidemiology
Community-Acquired Infections - microbiology
Cross Infection - epidemiology
Cross Infection - microbiology
Denmark - epidemiology
E coli
Epidemiology
Escherichia coli - enzymology
Escherichia coli - genetics
Escherichia coli - isolation & purification
Escherichia coli Infections - drug therapy
Escherichia coli Infections - epidemiology
Escherichia coli Infections - microbiology
Genetic diversity
Genomes
Health surveillance
Humans
Middle Aged
Molecular Epidemiology
Multilocus Sequence Typing
Plasmids - genetics
Polymerase Chain Reaction
Surveillance
Travel
Whole Genome Sequencing
title Surveillance of OXA-244-producing Escherichia coli and epidemiologic investigation of cases, Denmark, January 2016 to August 2019
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