Identification and profiling of microRNAs and differentially expressed genes during anther development between a genetic male-sterile mutant and its wildtype cotton via high-throughput RNA sequencing

Genetic male sterility (GMS) facilitates hybrid seed production in crops including cotton ( Gossypium hirsutum ). However, the genetic and molecular mechanisms specifically involved in this developmental process are poorly understood. In this study, small RNA sequencing, degradome sequencing, and tr...

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Veröffentlicht in:Molecular genetics and genomics : MGG 2020-05, Vol.295 (3), p.645-660
Hauptverfasser: Yu, Dingwei, Li, Libei, Wei, Hengling, Yu, Shuxun
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Yu, Shuxun
description Genetic male sterility (GMS) facilitates hybrid seed production in crops including cotton ( Gossypium hirsutum ). However, the genetic and molecular mechanisms specifically involved in this developmental process are poorly understood. In this study, small RNA sequencing, degradome sequencing, and transcriptome sequencing were performed to analyze miRNAs and their target genes during anther development in a GMS mutant (‘Dong A’) and its fertile wildtype (WT). A total of 80 known and 220 novel miRNAs were identified, 71 of which showed differential expressions during anther development. A further degradome sequencing revealed a total of 117 candidate target genes cleaved by 16 known and 36 novel miRNAs. Based on RNA-seq, 24, 11, and 21 predicted target genes showed expression correlations with the corresponding miRNAs at the meiosis, tetrad and uninucleate stages, respectively. In addition, a large number of differentially expressed genes were identified, most of which were involved in sucrose and starch metabolism, carbohydrate metabolism, and plant hormone signal transduction based on Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. The results of our study provide valuable information for further functional investigations of the important miRNAs and target genes involved in genetic male sterility and advance our understanding of miRNA regulatory functions during cotton anther development.
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In addition, a large number of differentially expressed genes were identified, most of which were involved in sucrose and starch metabolism, carbohydrate metabolism, and plant hormone signal transduction based on Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. The results of our study provide valuable information for further functional investigations of the important miRNAs and target genes involved in genetic male sterility and advance our understanding of miRNA regulatory functions during cotton anther development.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>32172356</pmid><doi>10.1007/s00438-020-01656-y</doi><tpages>16</tpages><oa>free_for_read</oa></addata></record>
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subjects Animal Genetics and Genomics
Biochemistry
Biomedical and Life Sciences
Carbohydrate metabolism
Cotton
Flowers - genetics
Flowers - growth & development
Gene expression
Gene Expression Profiling
Gene Expression Regulation, Developmental
Gene Expression Regulation, Plant
Genomes
Gossypium - genetics
Gossypium - growth & development
Gossypium hirsutum
High-Throughput Nucleotide Sequencing
Human Genetics
Life Sciences
Male sterility
Meiosis
Metabolism
Microbial Genetics and Genomics
MicroRNAs
MicroRNAs - genetics
miRNA
Molecular modelling
Mutants
Mutation
Original
Original Article
Plant Genetics and Genomics
Plant Infertility - genetics
Plant Proteins - genetics
Plants, Genetically Modified - genetics
Plants, Genetically Modified - growth & development
Signal transduction
Starch
Sucrose
Transcriptome
title Identification and profiling of microRNAs and differentially expressed genes during anther development between a genetic male-sterile mutant and its wildtype cotton via high-throughput RNA sequencing
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