Genetic polymorphism association analysis of SNPs on the species conservation genes of Tan sheep and Hu sheep
For further understanding the genetic control mechanisms of growth and development in Tan sheep, and culturing good traits on meat performance, which is very important to both in developing local species and improving economic efficaciously. In our study, we recruited a total of 250 Tan sheep and 17...
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| Veröffentlicht in: | Tropical animal health and production 2020-05, Vol.52 (3), p.915-926 |
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| creator | EEr, Hehua Ma, Lina Xie, Xiulan Ma, Jifeng Ma, Xiaoming Yue, Caijuan Ma, Qing Liang, Xiaojun Ding, Wei Li, Yingkang |
| description | For further understanding the genetic control mechanisms of growth and development in Tan sheep, and culturing good traits on meat performance, which is very important to both in developing local species and improving economic efficaciously. In our study, we recruited a total of 250 Tan sheep and 174 healthy Hu sheep to detect 32 SNPs in GH, GHR, NPY, Leptin, H-FABP, MSTN, and CAST by using direct sequencing techniques, in order to explore genetic marking loci which were an association with growth characters. From the results, we found different SNPs with an obvious difference for the growth traits. In the different genetic model analysis, we found SNP12, SNP29, SNP41, SNP8, SNP34, SNP35, SNP9, SNP10, SNP36, SNP45, and SNP39 were a significantly negative association with the two kinds of sheep. And SNP46, SNP42, and SNP69 with the positive association between the different trait in sheep were analyzed. From the LD and haplotype analysis, we found three blocks with the positive association in growth traits between Tan sheep and Hu sheep. The block of SNP29, SNP32, SNP34, SNP35, SNP36, SNP39, SNP41, SNP42, SNP45, and SNP46 with the genotype “AATCTACTTA” is the most significantly association with the traits. In summary, the study initially explored the genes for growth and reproduction between Tan sheep and Hu sheep and found some statistically significant results which demonstrate that there are genetic differences. These differential molecular markers may provide a scientific theoretical basis for the preferred species of Tan sheep which with good meat performance and better utilization of species resources. |
| doi_str_mv | 10.1007/s11250-019-02063-1 |
| format | Article |
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In our study, we recruited a total of 250 Tan sheep and 174 healthy Hu sheep to detect 32 SNPs in GH, GHR, NPY, Leptin, H-FABP, MSTN, and CAST by using direct sequencing techniques, in order to explore genetic marking loci which were an association with growth characters. From the results, we found different SNPs with an obvious difference for the growth traits. In the different genetic model analysis, we found SNP12, SNP29, SNP41, SNP8, SNP34, SNP35, SNP9, SNP10, SNP36, SNP45, and SNP39 were a significantly negative association with the two kinds of sheep. And SNP46, SNP42, and SNP69 with the positive association between the different trait in sheep were analyzed. From the LD and haplotype analysis, we found three blocks with the positive association in growth traits between Tan sheep and Hu sheep. The block of SNP29, SNP32, SNP34, SNP35, SNP36, SNP39, SNP41, SNP42, SNP45, and SNP46 with the genotype “AATCTACTTA” is the most significantly association with the traits. In summary, the study initially explored the genes for growth and reproduction between Tan sheep and Hu sheep and found some statistically significant results which demonstrate that there are genetic differences. These differential molecular markers may provide a scientific theoretical basis for the preferred species of Tan sheep which with good meat performance and better utilization of species resources.</description><identifier>ISSN: 0049-4747</identifier><identifier>EISSN: 1573-7438</identifier><identifier>DOI: 10.1007/s11250-019-02063-1</identifier><identifier>PMID: 32026291</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Animals ; Association analysis ; Biomedical and Life Sciences ; Conservation of Natural Resources ; Fatty acid-binding protein ; Gene polymorphism ; Genes ; Genetic analysis ; Genetic control ; Genetic Markers ; Genotype ; Haplotypes ; Leptin ; Life Sciences ; Meat ; Neuropeptide Y ; Phenotype ; Polymorphism ; Polymorphism, Single Nucleotide ; Regular ; Regular Articles ; Sheep ; Sheep - genetics ; Single-nucleotide polymorphism ; Species ; Statistical analysis ; Veterinary Medicine/Veterinary Science ; Wildlife conservation ; Zoology</subject><ispartof>Tropical animal health and production, 2020-05, Vol.52 (3), p.915-926</ispartof><rights>The Author(s) 2020</rights><rights>The Author(s) 2020. 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In summary, the study initially explored the genes for growth and reproduction between Tan sheep and Hu sheep and found some statistically significant results which demonstrate that there are genetic differences. These differential molecular markers may provide a scientific theoretical basis for the preferred species of Tan sheep which with good meat performance and better utilization of species resources.</description><subject>Animals</subject><subject>Association analysis</subject><subject>Biomedical and Life Sciences</subject><subject>Conservation of Natural Resources</subject><subject>Fatty acid-binding protein</subject><subject>Gene polymorphism</subject><subject>Genes</subject><subject>Genetic analysis</subject><subject>Genetic control</subject><subject>Genetic Markers</subject><subject>Genotype</subject><subject>Haplotypes</subject><subject>Leptin</subject><subject>Life Sciences</subject><subject>Meat</subject><subject>Neuropeptide Y</subject><subject>Phenotype</subject><subject>Polymorphism</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Regular</subject><subject>Regular Articles</subject><subject>Sheep</subject><subject>Sheep - genetics</subject><subject>Single-nucleotide polymorphism</subject><subject>Species</subject><subject>Statistical analysis</subject><subject>Veterinary Medicine/Veterinary Science</subject><subject>Wildlife conservation</subject><subject>Zoology</subject><issn>0049-4747</issn><issn>1573-7438</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kU1v1DAQhi0EokvhD3BAlrhwCfgjceILEqpKi1QBEuVs2d7JrqvEDp6k0v57vE0pHwdOI2ue950Zv4S85OwtZ6x9h5yLhlWM64oJpmTFH5ENb1pZtbXsHpMNY7Wu6rZuT8gzxBvGiqxTT8mJFEwoofmGjBcQYQ6eTmk4jClP-4AjtYjJBzuHFKmNdjhgQJp6-u3z11IjnfdAcQIfAKlPESHfrvCuuN2R1zZS3ANMRb-ll8v6eE6e9HZAeHFfT8n3j-fXZ5fV1ZeLT2cfripftp2rpvbWW6m2XPm2rTtwTbmqV5p5J7VXfek63khfC9Uy5zrufKd070A3ohNOnpL3q--0uBG2HuKc7WCmHEabDybZYP7uxLA3u3RrWq6Z6nQxeHNvkNOPBXA2Y0APw2AjpAWNkI1gjSzTC_r6H_QmLbl82pHSimmhFC-UWCmfE2KG_mEZzswxTbOmaUqa5i5NcxS9-vOMB8mv-AogVwBLK-4g_579H9ufj1CsRQ</recordid><startdate>20200501</startdate><enddate>20200501</enddate><creator>EEr, Hehua</creator><creator>Ma, Lina</creator><creator>Xie, Xiulan</creator><creator>Ma, Jifeng</creator><creator>Ma, Xiaoming</creator><creator>Yue, Caijuan</creator><creator>Ma, Qing</creator><creator>Liang, Xiaojun</creator><creator>Ding, Wei</creator><creator>Li, Yingkang</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U7</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-3929-905X</orcidid></search><sort><creationdate>20200501</creationdate><title>Genetic polymorphism association analysis of SNPs on the species conservation genes of Tan sheep and Hu sheep</title><author>EEr, Hehua ; Ma, Lina ; Xie, Xiulan ; Ma, Jifeng ; Ma, Xiaoming ; Yue, Caijuan ; Ma, Qing ; Liang, Xiaojun ; Ding, Wei ; Li, Yingkang</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c474t-54caca36d16c7748eb5573f690cb39c6facab153c42670bb81bc869fbe95282b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Animals</topic><topic>Association analysis</topic><topic>Biomedical and Life Sciences</topic><topic>Conservation of Natural Resources</topic><topic>Fatty acid-binding protein</topic><topic>Gene polymorphism</topic><topic>Genes</topic><topic>Genetic analysis</topic><topic>Genetic control</topic><topic>Genetic Markers</topic><topic>Genotype</topic><topic>Haplotypes</topic><topic>Leptin</topic><topic>Life Sciences</topic><topic>Meat</topic><topic>Neuropeptide Y</topic><topic>Phenotype</topic><topic>Polymorphism</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Regular</topic><topic>Regular Articles</topic><topic>Sheep</topic><topic>Sheep - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Tropical animal health and production</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>EEr, Hehua</au><au>Ma, Lina</au><au>Xie, Xiulan</au><au>Ma, Jifeng</au><au>Ma, Xiaoming</au><au>Yue, Caijuan</au><au>Ma, Qing</au><au>Liang, Xiaojun</au><au>Ding, Wei</au><au>Li, Yingkang</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic polymorphism association analysis of SNPs on the species conservation genes of Tan sheep and Hu sheep</atitle><jtitle>Tropical animal health and production</jtitle><stitle>Trop Anim Health Prod</stitle><addtitle>Trop Anim Health Prod</addtitle><date>2020-05-01</date><risdate>2020</risdate><volume>52</volume><issue>3</issue><spage>915</spage><epage>926</epage><pages>915-926</pages><issn>0049-4747</issn><eissn>1573-7438</eissn><abstract>For further understanding the genetic control mechanisms of growth and development in Tan sheep, and culturing good traits on meat performance, which is very important to both in developing local species and improving economic efficaciously. In our study, we recruited a total of 250 Tan sheep and 174 healthy Hu sheep to detect 32 SNPs in GH, GHR, NPY, Leptin, H-FABP, MSTN, and CAST by using direct sequencing techniques, in order to explore genetic marking loci which were an association with growth characters. From the results, we found different SNPs with an obvious difference for the growth traits. In the different genetic model analysis, we found SNP12, SNP29, SNP41, SNP8, SNP34, SNP35, SNP9, SNP10, SNP36, SNP45, and SNP39 were a significantly negative association with the two kinds of sheep. And SNP46, SNP42, and SNP69 with the positive association between the different trait in sheep were analyzed. From the LD and haplotype analysis, we found three blocks with the positive association in growth traits between Tan sheep and Hu sheep. The block of SNP29, SNP32, SNP34, SNP35, SNP36, SNP39, SNP41, SNP42, SNP45, and SNP46 with the genotype “AATCTACTTA” is the most significantly association with the traits. In summary, the study initially explored the genes for growth and reproduction between Tan sheep and Hu sheep and found some statistically significant results which demonstrate that there are genetic differences. These differential molecular markers may provide a scientific theoretical basis for the preferred species of Tan sheep which with good meat performance and better utilization of species resources.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>32026291</pmid><doi>10.1007/s11250-019-02063-1</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0002-3929-905X</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Animals Association analysis Biomedical and Life Sciences Conservation of Natural Resources Fatty acid-binding protein Gene polymorphism Genes Genetic analysis Genetic control Genetic Markers Genotype Haplotypes Leptin Life Sciences Meat Neuropeptide Y Phenotype Polymorphism Polymorphism, Single Nucleotide Regular Regular Articles Sheep Sheep - genetics Single-nucleotide polymorphism Species Statistical analysis Veterinary Medicine/Veterinary Science Wildlife conservation Zoology |
| title | Genetic polymorphism association analysis of SNPs on the species conservation genes of Tan sheep and Hu sheep |
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