Phase unwrapping based on a residual en-decoder network for phase images in Fourier domain Doppler optical coherence tomography
To solve the phase unwrapping problem for phase images in Fourier domain Doppler optical coherence tomography (DOCT), we propose a deep learning-based residual en-decoder network (REDN) method. In our approach, we reformulate the definition for obtaining the true phase as obtaining an integer multip...
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Veröffentlicht in: | Biomedical optics express 2020-04, Vol.11 (4), p.1760-1771 |
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creator | Wu, Chuanchao Qiao, Zhengyu Zhang, Nan Li, Xiaochen Fan, Jingfan Song, Hong Ai, Danni Yang, Jian Huang, Yong |
description | To solve the phase unwrapping problem for phase images in Fourier domain Doppler optical coherence tomography (DOCT), we propose a deep learning-based residual en-decoder network (REDN) method. In our approach, we reformulate the definition for obtaining the true phase as obtaining an integer multiple of 2
at each pixel by semantic segmentation. The proposed REDN architecture can provide recognition performance with pixel-level accuracy. To address the lack of phase images that are noise and wrapping free from DOCT systems for training, we used simulated images synthesized with DOCT phase image background noise features. An evaluation study on simulated images, DOCT phase images of phantom milk flowing in a plastic tube and a mouse artery, was performed. Meanwhile, a comparison study with recently proposed deep learning-based DeepLabV3+ and PhaseNet methods for signal phase unwrapping and traditional modified networking programming (MNP) method was also performed. Both visual inspection and quantitative metrical evaluation based on accuracy, specificity, sensitivity, root-mean-square-error, total-variation, and processing time demonstrate the robustness, effectiveness and superiority of our method. The proposed REDN method will benefit accurate and fast DOCT phase image-based diagnosis and evaluation when the detected phase is wrapped and will enrich the deep learning-based image processing platform for DOCT images. |
doi_str_mv | 10.1364/BOE.386101 |
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at each pixel by semantic segmentation. The proposed REDN architecture can provide recognition performance with pixel-level accuracy. To address the lack of phase images that are noise and wrapping free from DOCT systems for training, we used simulated images synthesized with DOCT phase image background noise features. An evaluation study on simulated images, DOCT phase images of phantom milk flowing in a plastic tube and a mouse artery, was performed. Meanwhile, a comparison study with recently proposed deep learning-based DeepLabV3+ and PhaseNet methods for signal phase unwrapping and traditional modified networking programming (MNP) method was also performed. Both visual inspection and quantitative metrical evaluation based on accuracy, specificity, sensitivity, root-mean-square-error, total-variation, and processing time demonstrate the robustness, effectiveness and superiority of our method. The proposed REDN method will benefit accurate and fast DOCT phase image-based diagnosis and evaluation when the detected phase is wrapped and will enrich the deep learning-based image processing platform for DOCT images.</description><identifier>ISSN: 2156-7085</identifier><identifier>EISSN: 2156-7085</identifier><identifier>DOI: 10.1364/BOE.386101</identifier><identifier>PMID: 32341846</identifier><language>eng</language><publisher>United States: Optical Society of America</publisher><ispartof>Biomedical optics express, 2020-04, Vol.11 (4), p.1760-1771</ispartof><rights>2020 Optical Society of America under the terms of the OSA Open Access Publishing Agreement.</rights><rights>2020 Optical Society of America under the terms of the 2020 Optical Society of America</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c378t-df3171b5e15a75c6d3da722a64e0ee43a4b03913613c6ca9ea6c8580e27c3c963</citedby><cites>FETCH-LOGICAL-c378t-df3171b5e15a75c6d3da722a64e0ee43a4b03913613c6ca9ea6c8580e27c3c963</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7173896/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7173896/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32341846$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wu, Chuanchao</creatorcontrib><creatorcontrib>Qiao, Zhengyu</creatorcontrib><creatorcontrib>Zhang, Nan</creatorcontrib><creatorcontrib>Li, Xiaochen</creatorcontrib><creatorcontrib>Fan, Jingfan</creatorcontrib><creatorcontrib>Song, Hong</creatorcontrib><creatorcontrib>Ai, Danni</creatorcontrib><creatorcontrib>Yang, Jian</creatorcontrib><creatorcontrib>Huang, Yong</creatorcontrib><title>Phase unwrapping based on a residual en-decoder network for phase images in Fourier domain Doppler optical coherence tomography</title><title>Biomedical optics express</title><addtitle>Biomed Opt Express</addtitle><description>To solve the phase unwrapping problem for phase images in Fourier domain Doppler optical coherence tomography (DOCT), we propose a deep learning-based residual en-decoder network (REDN) method. In our approach, we reformulate the definition for obtaining the true phase as obtaining an integer multiple of 2
at each pixel by semantic segmentation. The proposed REDN architecture can provide recognition performance with pixel-level accuracy. To address the lack of phase images that are noise and wrapping free from DOCT systems for training, we used simulated images synthesized with DOCT phase image background noise features. An evaluation study on simulated images, DOCT phase images of phantom milk flowing in a plastic tube and a mouse artery, was performed. Meanwhile, a comparison study with recently proposed deep learning-based DeepLabV3+ and PhaseNet methods for signal phase unwrapping and traditional modified networking programming (MNP) method was also performed. Both visual inspection and quantitative metrical evaluation based on accuracy, specificity, sensitivity, root-mean-square-error, total-variation, and processing time demonstrate the robustness, effectiveness and superiority of our method. The proposed REDN method will benefit accurate and fast DOCT phase image-based diagnosis and evaluation when the detected phase is wrapped and will enrich the deep learning-based image processing platform for DOCT images.</description><issn>2156-7085</issn><issn>2156-7085</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNpVkUFP3DAQha2qVUGUS39A5WNVKWBnEtt7qdQuuwUJCQ5wtrz27K4hsVM7AXHir9ewFIEv46f5_GbkR8hXzo44iOb498XiCJTgjH8g-zVvRSWZaj--ue-Rw5xvWDlNIxmoz2QPami4asQ-ebzcmox0CvfJDIMPG7oq2tEYqKEJs3eT6SiGyqGNDhMNON7HdEvXMdHh-a3vzQYz9YEu45R8YVzsTZEncRi6IuMweltcbNxiwmCRjrGPmzJw-_CFfFqbLuPhSz0g18vF1fy0Or_4czb_dV5ZkGqs3Bq45KsWeWtka4UDZ2RdG9EgQ2zANCsGs_IhHKywZoZGWNUqhrW0YGcCDsjPne8wrXp0FsOYTKeHVLZPDzoar993gt_qTbzTkktQzwbfXwxS_DthHnXvs8WuMwHjlHUNs1ZAqzgU9McOtSnmnHD9OoYz_RSaLqHpXWgF_vZ2sVf0f0TwD5twlLM</recordid><startdate>20200401</startdate><enddate>20200401</enddate><creator>Wu, Chuanchao</creator><creator>Qiao, Zhengyu</creator><creator>Zhang, Nan</creator><creator>Li, Xiaochen</creator><creator>Fan, Jingfan</creator><creator>Song, Hong</creator><creator>Ai, Danni</creator><creator>Yang, Jian</creator><creator>Huang, Yong</creator><general>Optical Society of America</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20200401</creationdate><title>Phase unwrapping based on a residual en-decoder network for phase images in Fourier domain Doppler optical coherence tomography</title><author>Wu, Chuanchao ; Qiao, Zhengyu ; Zhang, Nan ; Li, Xiaochen ; Fan, Jingfan ; Song, Hong ; Ai, Danni ; Yang, Jian ; Huang, Yong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c378t-df3171b5e15a75c6d3da722a64e0ee43a4b03913613c6ca9ea6c8580e27c3c963</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wu, Chuanchao</creatorcontrib><creatorcontrib>Qiao, Zhengyu</creatorcontrib><creatorcontrib>Zhang, Nan</creatorcontrib><creatorcontrib>Li, Xiaochen</creatorcontrib><creatorcontrib>Fan, Jingfan</creatorcontrib><creatorcontrib>Song, Hong</creatorcontrib><creatorcontrib>Ai, Danni</creatorcontrib><creatorcontrib>Yang, Jian</creatorcontrib><creatorcontrib>Huang, Yong</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Biomedical optics express</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wu, Chuanchao</au><au>Qiao, Zhengyu</au><au>Zhang, Nan</au><au>Li, Xiaochen</au><au>Fan, Jingfan</au><au>Song, Hong</au><au>Ai, Danni</au><au>Yang, Jian</au><au>Huang, Yong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phase unwrapping based on a residual en-decoder network for phase images in Fourier domain Doppler optical coherence tomography</atitle><jtitle>Biomedical optics express</jtitle><addtitle>Biomed Opt Express</addtitle><date>2020-04-01</date><risdate>2020</risdate><volume>11</volume><issue>4</issue><spage>1760</spage><epage>1771</epage><pages>1760-1771</pages><issn>2156-7085</issn><eissn>2156-7085</eissn><abstract>To solve the phase unwrapping problem for phase images in Fourier domain Doppler optical coherence tomography (DOCT), we propose a deep learning-based residual en-decoder network (REDN) method. In our approach, we reformulate the definition for obtaining the true phase as obtaining an integer multiple of 2
at each pixel by semantic segmentation. The proposed REDN architecture can provide recognition performance with pixel-level accuracy. To address the lack of phase images that are noise and wrapping free from DOCT systems for training, we used simulated images synthesized with DOCT phase image background noise features. An evaluation study on simulated images, DOCT phase images of phantom milk flowing in a plastic tube and a mouse artery, was performed. Meanwhile, a comparison study with recently proposed deep learning-based DeepLabV3+ and PhaseNet methods for signal phase unwrapping and traditional modified networking programming (MNP) method was also performed. Both visual inspection and quantitative metrical evaluation based on accuracy, specificity, sensitivity, root-mean-square-error, total-variation, and processing time demonstrate the robustness, effectiveness and superiority of our method. The proposed REDN method will benefit accurate and fast DOCT phase image-based diagnosis and evaluation when the detected phase is wrapped and will enrich the deep learning-based image processing platform for DOCT images.</abstract><cop>United States</cop><pub>Optical Society of America</pub><pmid>32341846</pmid><doi>10.1364/BOE.386101</doi><tpages>12</tpages><oa>free_for_read</oa></addata></record> |
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title | Phase unwrapping based on a residual en-decoder network for phase images in Fourier domain Doppler optical coherence tomography |
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