Adaptive introgression as a driver of local adaptation to climate in European white oaks
• Latitudinal and elevational gradients provide valuable experimental settings for studies of the potential impact of global warming on forest tree species. The availability of long-term phenological surveys in common garden experiments for traits associated with climate, such as bud flushing for se...
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creator | Leroy, Thibault Louvet, Jean-Marc Lalanne, Céline Le Provost, Grégoire Labadie, Karine Aury, Jean-Marc Delzon, Sylvain Plomion, Christophe Kremer, Antoine |
description | • Latitudinal and elevational gradients provide valuable experimental settings for studies of the potential impact of global warming on forest tree species. The availability of long-term phenological surveys in common garden experiments for traits associated with climate, such as bud flushing for sessile oaks (Quercus petraea), provide an ideal opportunity to investigate this impact.
• We sequenced 18 sessile oak populations and used available sequencing data for three other closely related European white oak species (Quercus pyrenaica, Quercus pubescens, and Quercus robur) to explore the evolutionary processes responsible for shaping the genetic variation across latitudinal and elevational gradients in extant sessile oaks. We used phenotypic surveys in common garden experiments and climatic data for the population of origin to perform genome-wide scans for population differentiation and genotype–environment and genotype–phenotype associations.
• The inferred historical relationships between Q. petraea populations suggest that interspecific gene flow occurred between Q. robur and Q. petraea populations from cooler or wetter areas. A genome-wide scan of differentiation between Q. petraea populations identified single nucleotide polymorphisms (SNPs) displaying strong interspecific relative divergence between these two species. These SNPs followed genetic clines along climatic or phenotypic gradients, providing further support for the likely contribution of introgression to the adaptive divergence of Q. petraea populations.
• Overall, the results indicate that outliers and associated SNPs are Q. robur ancestry-informative. We discuss the results of this study in the framework of the postglacial colonization scenario, in which introgression and diversifying selection have been proposed as essential drivers of Q. petraea microevolution. |
doi_str_mv | 10.1111/nph.16095 |
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• We sequenced 18 sessile oak populations and used available sequencing data for three other closely related European white oak species (Quercus pyrenaica, Quercus pubescens, and Quercus robur) to explore the evolutionary processes responsible for shaping the genetic variation across latitudinal and elevational gradients in extant sessile oaks. We used phenotypic surveys in common garden experiments and climatic data for the population of origin to perform genome-wide scans for population differentiation and genotype–environment and genotype–phenotype associations.
• The inferred historical relationships between Q. petraea populations suggest that interspecific gene flow occurred between Q. robur and Q. petraea populations from cooler or wetter areas. A genome-wide scan of differentiation between Q. petraea populations identified single nucleotide polymorphisms (SNPs) displaying strong interspecific relative divergence between these two species. These SNPs followed genetic clines along climatic or phenotypic gradients, providing further support for the likely contribution of introgression to the adaptive divergence of Q. petraea populations.
• Overall, the results indicate that outliers and associated SNPs are Q. robur ancestry-informative. We discuss the results of this study in the framework of the postglacial colonization scenario, in which introgression and diversifying selection have been proposed as essential drivers of Q. petraea microevolution.</description><identifier>ISSN: 0028-646X</identifier><identifier>EISSN: 1469-8137</identifier><identifier>DOI: 10.1111/nph.16095</identifier><identifier>PMID: 31394003</identifier><language>eng</language><publisher>England: Wiley</publisher><subject>Adaptation ; Adaptation, Physiological - genetics ; Biological Evolution ; Climatic data ; Clines ; Colonization ; Differentiation ; Divergence ; Gene Flow ; genetic clines ; Genetic diversity ; genome scans ; Genomes ; Genotype ; Genotypes ; genotype–environment associations ; Global warming ; Gradients ; Interspecific ; interspecific gene flow ; Introgression ; Life Sciences ; local adaptation ; Nucleotides ; Outliers (statistics) ; Phenotypes ; Polls & surveys ; Population differentiation ; Populations ; Quercus - genetics ; Quercus petraea ; Quercus robur ; Single-nucleotide polymorphism ; Species ; Surveys</subject><ispartof>The New phytologist, 2020-05, Vol.226 (4), p.1171-1182</ispartof><rights>2019 INRA © 2019 New Phytologist Trust</rights><rights>2019 INRA New Phytologist © 2019 New Phytologist Trust</rights><rights>2019 INRA New Phytologist © 2019 New Phytologist Trust.</rights><rights>Copyright © 2020 New Phytologist Trust</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4995-9d860f2139b6a0b6361847c4261cfb1ef13af141795daf88b6784835bf82b3403</citedby><cites>FETCH-LOGICAL-c4995-9d860f2139b6a0b6361847c4261cfb1ef13af141795daf88b6784835bf82b3403</cites><orcidid>0000-0003-2259-9723 ; 0000-0003-1718-3010 ; 0000-0003-3442-1711 ; 0000-0002-3176-2767 ; 0000-0001-7467-8509 ; 0000-0003-1561-266X ; 0000-0002-3372-3235</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/26914615$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/26914615$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,780,784,803,885,1416,1432,27923,27924,45573,45574,46408,46832,58016,58249</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31394003$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.inrae.fr/hal-02627923$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Leroy, Thibault</creatorcontrib><creatorcontrib>Louvet, Jean-Marc</creatorcontrib><creatorcontrib>Lalanne, Céline</creatorcontrib><creatorcontrib>Le Provost, Grégoire</creatorcontrib><creatorcontrib>Labadie, Karine</creatorcontrib><creatorcontrib>Aury, Jean-Marc</creatorcontrib><creatorcontrib>Delzon, Sylvain</creatorcontrib><creatorcontrib>Plomion, Christophe</creatorcontrib><creatorcontrib>Kremer, Antoine</creatorcontrib><title>Adaptive introgression as a driver of local adaptation to climate in European white oaks</title><title>The New phytologist</title><addtitle>New Phytol</addtitle><description>• Latitudinal and elevational gradients provide valuable experimental settings for studies of the potential impact of global warming on forest tree species. The availability of long-term phenological surveys in common garden experiments for traits associated with climate, such as bud flushing for sessile oaks (Quercus petraea), provide an ideal opportunity to investigate this impact.
• We sequenced 18 sessile oak populations and used available sequencing data for three other closely related European white oak species (Quercus pyrenaica, Quercus pubescens, and Quercus robur) to explore the evolutionary processes responsible for shaping the genetic variation across latitudinal and elevational gradients in extant sessile oaks. We used phenotypic surveys in common garden experiments and climatic data for the population of origin to perform genome-wide scans for population differentiation and genotype–environment and genotype–phenotype associations.
• The inferred historical relationships between Q. petraea populations suggest that interspecific gene flow occurred between Q. robur and Q. petraea populations from cooler or wetter areas. A genome-wide scan of differentiation between Q. petraea populations identified single nucleotide polymorphisms (SNPs) displaying strong interspecific relative divergence between these two species. These SNPs followed genetic clines along climatic or phenotypic gradients, providing further support for the likely contribution of introgression to the adaptive divergence of Q. petraea populations.
• Overall, the results indicate that outliers and associated SNPs are Q. robur ancestry-informative. We discuss the results of this study in the framework of the postglacial colonization scenario, in which introgression and diversifying selection have been proposed as essential drivers of Q. petraea microevolution.</description><subject>Adaptation</subject><subject>Adaptation, Physiological - genetics</subject><subject>Biological Evolution</subject><subject>Climatic data</subject><subject>Clines</subject><subject>Colonization</subject><subject>Differentiation</subject><subject>Divergence</subject><subject>Gene Flow</subject><subject>genetic clines</subject><subject>Genetic diversity</subject><subject>genome scans</subject><subject>Genomes</subject><subject>Genotype</subject><subject>Genotypes</subject><subject>genotype–environment associations</subject><subject>Global warming</subject><subject>Gradients</subject><subject>Interspecific</subject><subject>interspecific gene flow</subject><subject>Introgression</subject><subject>Life Sciences</subject><subject>local adaptation</subject><subject>Nucleotides</subject><subject>Outliers (statistics)</subject><subject>Phenotypes</subject><subject>Polls & surveys</subject><subject>Population differentiation</subject><subject>Populations</subject><subject>Quercus - genetics</subject><subject>Quercus petraea</subject><subject>Quercus robur</subject><subject>Single-nucleotide polymorphism</subject><subject>Species</subject><subject>Surveys</subject><issn>0028-646X</issn><issn>1469-8137</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1ksFP2zAUxq1pCDrgsD-AyRKnHVL8bMexL5MqxNZJFeMAEjfLSWyaEuLMTov473FWqLpJ88XSe9_383v6jNBnIFNI56Lrl1MQROUf0AS4UJkEVnxEE0KozAQX90foU4wrQpJE0EN0xIApTgiboPtZbfqh2VjcdEPwD8HG2PgOm4gNrkNqBOwdbn1lWmxGrRnG_uBx1TZPZhiN-GodfG9Nh5-XTap48xhP0IEzbbSnb_cxuvt-dXs5zxa_fvy8nC2yiiuVZ6qWgjia5imFIaVgAiQvKk4FVK4E64AZBxwKldfGSVmKQnLJ8tJJWjJO2DH6tuX26_LJ1pVNa5hW9yENF160N43-u9M1S_3gN7oAIYDRBPi6BSz_sc1nCz3WCBW0UJRtIGnP3x4L_vfaxkGv_Dp0aT9NmSK8UAB7xCr4GIN1OywQPQamU2D6T2BJ-2V__J3yPaEkuNgKnpvWvvyfpK9v5u_Is61jFQcfdg4qVPobkLNXG4SoqQ</recordid><startdate>202005</startdate><enddate>202005</enddate><creator>Leroy, Thibault</creator><creator>Louvet, Jean-Marc</creator><creator>Lalanne, Céline</creator><creator>Le Provost, Grégoire</creator><creator>Labadie, Karine</creator><creator>Aury, Jean-Marc</creator><creator>Delzon, Sylvain</creator><creator>Plomion, Christophe</creator><creator>Kremer, Antoine</creator><general>Wiley</general><general>Wiley Subscription Services, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7SN</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>L.G</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>1XC</scope><scope>VOOES</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-2259-9723</orcidid><orcidid>https://orcid.org/0000-0003-1718-3010</orcidid><orcidid>https://orcid.org/0000-0003-3442-1711</orcidid><orcidid>https://orcid.org/0000-0002-3176-2767</orcidid><orcidid>https://orcid.org/0000-0001-7467-8509</orcidid><orcidid>https://orcid.org/0000-0003-1561-266X</orcidid><orcidid>https://orcid.org/0000-0002-3372-3235</orcidid></search><sort><creationdate>202005</creationdate><title>Adaptive introgression as a driver of local adaptation to climate in European white oaks</title><author>Leroy, Thibault ; 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The availability of long-term phenological surveys in common garden experiments for traits associated with climate, such as bud flushing for sessile oaks (Quercus petraea), provide an ideal opportunity to investigate this impact.
• We sequenced 18 sessile oak populations and used available sequencing data for three other closely related European white oak species (Quercus pyrenaica, Quercus pubescens, and Quercus robur) to explore the evolutionary processes responsible for shaping the genetic variation across latitudinal and elevational gradients in extant sessile oaks. We used phenotypic surveys in common garden experiments and climatic data for the population of origin to perform genome-wide scans for population differentiation and genotype–environment and genotype–phenotype associations.
• The inferred historical relationships between Q. petraea populations suggest that interspecific gene flow occurred between Q. robur and Q. petraea populations from cooler or wetter areas. A genome-wide scan of differentiation between Q. petraea populations identified single nucleotide polymorphisms (SNPs) displaying strong interspecific relative divergence between these two species. These SNPs followed genetic clines along climatic or phenotypic gradients, providing further support for the likely contribution of introgression to the adaptive divergence of Q. petraea populations.
• Overall, the results indicate that outliers and associated SNPs are Q. robur ancestry-informative. We discuss the results of this study in the framework of the postglacial colonization scenario, in which introgression and diversifying selection have been proposed as essential drivers of Q. petraea microevolution.</abstract><cop>England</cop><pub>Wiley</pub><pmid>31394003</pmid><doi>10.1111/nph.16095</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0003-2259-9723</orcidid><orcidid>https://orcid.org/0000-0003-1718-3010</orcidid><orcidid>https://orcid.org/0000-0003-3442-1711</orcidid><orcidid>https://orcid.org/0000-0002-3176-2767</orcidid><orcidid>https://orcid.org/0000-0001-7467-8509</orcidid><orcidid>https://orcid.org/0000-0003-1561-266X</orcidid><orcidid>https://orcid.org/0000-0002-3372-3235</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Adaptation Adaptation, Physiological - genetics Biological Evolution Climatic data Clines Colonization Differentiation Divergence Gene Flow genetic clines Genetic diversity genome scans Genomes Genotype Genotypes genotype–environment associations Global warming Gradients Interspecific interspecific gene flow Introgression Life Sciences local adaptation Nucleotides Outliers (statistics) Phenotypes Polls & surveys Population differentiation Populations Quercus - genetics Quercus petraea Quercus robur Single-nucleotide polymorphism Species Surveys |
title | Adaptive introgression as a driver of local adaptation to climate in European white oaks |
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