Soil bacterial diversity correlates with precipitation and soil pH in long-term maize cropping systems
Unraveling the key drivers of bacterial community assembly in agricultural soils is pivotal for soil nutrient management and crop productivity. Presently, the drivers of microbial community structure remain unexplored in maize cropping systems under complex and variable environmental scenarios acros...
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description | Unraveling the key drivers of bacterial community assembly in agricultural soils is pivotal for soil nutrient management and crop productivity. Presently, the drivers of microbial community structure remain unexplored in maize cropping systems under complex and variable environmental scenarios across large spatial scales. In this study, we conducted high-throughput 16S rRNA gene sequencing and network analysis to identify the major environmental factors driving bacterial community diversity and co-occurrence patterns in 21 maize field soils across China. The results show that mean annual precipitation and soil pH are the major environmental factors that shape soil bacterial communities in maize soils. The similarities of bacterial communities significantly decreased with increasing geographic distance between different sites. The differences in spatial turnover rates across bacterial phyla indicate the distinct dispersal capabilities of bacterial groups, and some abundant phyla exhibited high dispersal capabilities.
Aeromicrobium
,
Friedmanniella
,
Saccharothrix
,
Lamia
,
Rhodococcus
,
Skermanella
, and
Pedobacter
were identified as keystone taxa. Based on the node-level and network-level topological features, members of the core microbiome were more frequently found in the center of the ecosystem network compared with other taxa. This study highlights the major environmental factors driving bacterial community assembly in agro-ecosystems and the central ecological role of the core microbiome in maintaining the web of complex bacterial interactions. |
doi_str_mv | 10.1038/s41598-020-62919-7 |
format | Article |
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Aeromicrobium
,
Friedmanniella
,
Saccharothrix
,
Lamia
,
Rhodococcus
,
Skermanella
, and
Pedobacter
were identified as keystone taxa. Based on the node-level and network-level topological features, members of the core microbiome were more frequently found in the center of the ecosystem network compared with other taxa. This study highlights the major environmental factors driving bacterial community assembly in agro-ecosystems and the central ecological role of the core microbiome in maintaining the web of complex bacterial interactions.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-020-62919-7</identifier><identifier>PMID: 32265458</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/326/171/1818 ; 704/158/855 ; Agricultural ecosystems ; Agricultural land ; Bacteria ; Bacteria - classification ; Bacteria - genetics ; Bacteria - isolation & purification ; Biodiversity ; Biogeography ; Cereal crops ; Community structure ; Corn ; Crop production ; Cropping systems ; Crops, Agricultural - growth & development ; Dispersal ; Ecosystems ; Environmental factors ; Humanities and Social Sciences ; Hydrogen-Ion Concentration ; Microbiomes ; multidisciplinary ; pH effects ; Precipitation ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Science ; Science (multidisciplinary) ; Soil - chemistry ; Soil management ; Soil Microbiology ; Soil microorganisms ; Soil nutrients ; Soil pH ; Soils ; Zea mays - growth & development</subject><ispartof>Scientific reports, 2020-04, Vol.10 (1), p.6012-6012, Article 6012</ispartof><rights>The Author(s) 2020</rights><rights>The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c511t-cb8d181a4b7f1acc3f3d8ee81d40563204269745e319a82e4e85dad8f63c13813</citedby><cites>FETCH-LOGICAL-c511t-cb8d181a4b7f1acc3f3d8ee81d40563204269745e319a82e4e85dad8f63c13813</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7138807/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7138807/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,27901,27902,41096,42165,51551,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32265458$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tan, Wenjun</creatorcontrib><creatorcontrib>Wang, Junman</creatorcontrib><creatorcontrib>Bai, Wenqing</creatorcontrib><creatorcontrib>Qi, Jiejun</creatorcontrib><creatorcontrib>Chen, Weimin</creatorcontrib><title>Soil bacterial diversity correlates with precipitation and soil pH in long-term maize cropping systems</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>Unraveling the key drivers of bacterial community assembly in agricultural soils is pivotal for soil nutrient management and crop productivity. Presently, the drivers of microbial community structure remain unexplored in maize cropping systems under complex and variable environmental scenarios across large spatial scales. In this study, we conducted high-throughput 16S rRNA gene sequencing and network analysis to identify the major environmental factors driving bacterial community diversity and co-occurrence patterns in 21 maize field soils across China. The results show that mean annual precipitation and soil pH are the major environmental factors that shape soil bacterial communities in maize soils. The similarities of bacterial communities significantly decreased with increasing geographic distance between different sites. The differences in spatial turnover rates across bacterial phyla indicate the distinct dispersal capabilities of bacterial groups, and some abundant phyla exhibited high dispersal capabilities.
Aeromicrobium
,
Friedmanniella
,
Saccharothrix
,
Lamia
,
Rhodococcus
,
Skermanella
, and
Pedobacter
were identified as keystone taxa. Based on the node-level and network-level topological features, members of the core microbiome were more frequently found in the center of the ecosystem network compared with other taxa. This study highlights the major environmental factors driving bacterial community assembly in agro-ecosystems and the central ecological role of the core microbiome in maintaining the web of complex bacterial interactions.</description><subject>631/326/171/1818</subject><subject>704/158/855</subject><subject>Agricultural ecosystems</subject><subject>Agricultural land</subject><subject>Bacteria</subject><subject>Bacteria - classification</subject><subject>Bacteria - genetics</subject><subject>Bacteria - isolation & purification</subject><subject>Biodiversity</subject><subject>Biogeography</subject><subject>Cereal crops</subject><subject>Community structure</subject><subject>Corn</subject><subject>Crop production</subject><subject>Cropping systems</subject><subject>Crops, Agricultural - growth & development</subject><subject>Dispersal</subject><subject>Ecosystems</subject><subject>Environmental factors</subject><subject>Humanities and Social Sciences</subject><subject>Hydrogen-Ion Concentration</subject><subject>Microbiomes</subject><subject>multidisciplinary</subject><subject>pH effects</subject><subject>Precipitation</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA 16S</subject><subject>Science</subject><subject>Science (multidisciplinary)</subject><subject>Soil - chemistry</subject><subject>Soil management</subject><subject>Soil Microbiology</subject><subject>Soil microorganisms</subject><subject>Soil nutrients</subject><subject>Soil pH</subject><subject>Soils</subject><subject>Zea mays - growth & development</subject><issn>2045-2322</issn><issn>2045-2322</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNp9kU1PHSEUhkmjUWP9Ay4akm7cjPI5A5smjakfiUkX1TXhMmeumBmYAtfm9teX6_WrXZQNhPOcl_PyInRMySklXJ1lQaVWDWGkaZmmuuk-oANGhGwYZ2zn3XkfHeX8QOqSTAuq99B-vW2lkOoADT-iH_HCugLJ2xH3_hFS9mWNXUwJRlsg41--3OM5gfOzL7b4GLANPc6b1vkK-4DHGJZNlZjwZP1vwC7FefZhifM6F5jyR7Q72DHD0fN-iO4uvt2eXzU33y-vz7_eNE5SWhq3UD1V1IpFN1DrHB94rwAU7QWRLa-WWKs7IYFTbRUDAUr2tldDyx3livJD9GWrO68WE_QOQkl2NHPyk01rE603f1eCvzfL-Gi62q5IVwVOngVS_LmCXMzks4NxtAHiKhvGVddqypSs6Od_0Ie4SqHae6KY4FJvKLal6pfknGB4HYYSs0nSbJM0NUnzlKTZTPHpvY3XlpfcKsC3QK6lsIT09vZ_ZP8AbVWrCQ</recordid><startdate>20200407</startdate><enddate>20200407</enddate><creator>Tan, Wenjun</creator><creator>Wang, Junman</creator><creator>Bai, Wenqing</creator><creator>Qi, Jiejun</creator><creator>Chen, Weimin</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20200407</creationdate><title>Soil bacterial diversity correlates with precipitation and soil pH in long-term maize cropping systems</title><author>Tan, Wenjun ; Wang, Junman ; Bai, Wenqing ; Qi, Jiejun ; Chen, Weimin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c511t-cb8d181a4b7f1acc3f3d8ee81d40563204269745e319a82e4e85dad8f63c13813</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>631/326/171/1818</topic><topic>704/158/855</topic><topic>Agricultural ecosystems</topic><topic>Agricultural land</topic><topic>Bacteria</topic><topic>Bacteria - classification</topic><topic>Bacteria - genetics</topic><topic>Bacteria - isolation & purification</topic><topic>Biodiversity</topic><topic>Biogeography</topic><topic>Cereal crops</topic><topic>Community structure</topic><topic>Corn</topic><topic>Crop production</topic><topic>Cropping systems</topic><topic>Crops, Agricultural - growth & development</topic><topic>Dispersal</topic><topic>Ecosystems</topic><topic>Environmental factors</topic><topic>Humanities and Social Sciences</topic><topic>Hydrogen-Ion Concentration</topic><topic>Microbiomes</topic><topic>multidisciplinary</topic><topic>pH effects</topic><topic>Precipitation</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>rRNA 16S</topic><topic>Science</topic><topic>Science (multidisciplinary)</topic><topic>Soil - chemistry</topic><topic>Soil management</topic><topic>Soil Microbiology</topic><topic>Soil microorganisms</topic><topic>Soil nutrients</topic><topic>Soil pH</topic><topic>Soils</topic><topic>Zea mays - growth & development</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tan, Wenjun</creatorcontrib><creatorcontrib>Wang, Junman</creatorcontrib><creatorcontrib>Bai, Wenqing</creatorcontrib><creatorcontrib>Qi, Jiejun</creatorcontrib><creatorcontrib>Chen, Weimin</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tan, Wenjun</au><au>Wang, Junman</au><au>Bai, Wenqing</au><au>Qi, Jiejun</au><au>Chen, Weimin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Soil bacterial diversity correlates with precipitation and soil pH in long-term maize cropping systems</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2020-04-07</date><risdate>2020</risdate><volume>10</volume><issue>1</issue><spage>6012</spage><epage>6012</epage><pages>6012-6012</pages><artnum>6012</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>Unraveling the key drivers of bacterial community assembly in agricultural soils is pivotal for soil nutrient management and crop productivity. Presently, the drivers of microbial community structure remain unexplored in maize cropping systems under complex and variable environmental scenarios across large spatial scales. In this study, we conducted high-throughput 16S rRNA gene sequencing and network analysis to identify the major environmental factors driving bacterial community diversity and co-occurrence patterns in 21 maize field soils across China. The results show that mean annual precipitation and soil pH are the major environmental factors that shape soil bacterial communities in maize soils. The similarities of bacterial communities significantly decreased with increasing geographic distance between different sites. The differences in spatial turnover rates across bacterial phyla indicate the distinct dispersal capabilities of bacterial groups, and some abundant phyla exhibited high dispersal capabilities.
Aeromicrobium
,
Friedmanniella
,
Saccharothrix
,
Lamia
,
Rhodococcus
,
Skermanella
, and
Pedobacter
were identified as keystone taxa. Based on the node-level and network-level topological features, members of the core microbiome were more frequently found in the center of the ecosystem network compared with other taxa. This study highlights the major environmental factors driving bacterial community assembly in agro-ecosystems and the central ecological role of the core microbiome in maintaining the web of complex bacterial interactions.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>32265458</pmid><doi>10.1038/s41598-020-62919-7</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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source | MEDLINE; Nature Free; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Alma/SFX Local Collection; Free Full-Text Journals in Chemistry; Springer Nature OA Free Journals |
subjects | 631/326/171/1818 704/158/855 Agricultural ecosystems Agricultural land Bacteria Bacteria - classification Bacteria - genetics Bacteria - isolation & purification Biodiversity Biogeography Cereal crops Community structure Corn Crop production Cropping systems Crops, Agricultural - growth & development Dispersal Ecosystems Environmental factors Humanities and Social Sciences Hydrogen-Ion Concentration Microbiomes multidisciplinary pH effects Precipitation RNA, Ribosomal, 16S - genetics rRNA 16S Science Science (multidisciplinary) Soil - chemistry Soil management Soil Microbiology Soil microorganisms Soil nutrients Soil pH Soils Zea mays - growth & development |
title | Soil bacterial diversity correlates with precipitation and soil pH in long-term maize cropping systems |
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