Complete genome sequence of Nariva virus, a rodent paramyxovirus
Nariva virus (NarPV) was isolated from forest rodents (Zygodontomys b. brevicauda) in eastern Trinidad in the early 1960s. Initial classification within the family Paramyxoviridae was based mainly on morphological observations including the structure of nucleocapsids and virion surface projections....
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| Veröffentlicht in: | Archives of virology 2009-02, Vol.154 (2), p.199-207 |
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| creator | Lambeth, L. S Yu, M Anderson, D. E Crameri, G Eaton, B. T Wang, L.-F |
| description | Nariva virus (NarPV) was isolated from forest rodents (Zygodontomys b. brevicauda) in eastern Trinidad in the early 1960s. Initial classification within the family Paramyxoviridae was based mainly on morphological observations including the structure of nucleocapsids and virion surface projections. Here, we report the characterization of the complete genome sequence of NarPV. The genome is 15,276 nucleotides in length, conforming to the rule-of-six, and has a genome organization typical of most members of the family, with six transcriptional units in the order 3'-N-P-M-F-H-L-5'. The gene junctions contain highly conserved gene start and stop signals and a tri-nucleotide intergenic sequence present in most members of the subfamily Paramyxovirinae. Sequence comparison studies indicate that NarPV is most closely related to Mossman virus, which was isolated from wild rats (Rattus leucopus) in Queensland, Australia, in 1970. This study confirmed the classification of NarPV as a member of the subfamily Paramyxovirinae and established the close genome organization and sequence relationship between the two rodent paramyxoviruses isolated almost a decade apart and from two locations separated by more than 15,000 km. |
| doi_str_mv | 10.1007/s00705-008-0287-3 |
| format | Article |
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S ; Yu, M ; Anderson, D. E ; Crameri, G ; Eaton, B. T ; Wang, L.-F</creator><creatorcontrib>Lambeth, L. S ; Yu, M ; Anderson, D. E ; Crameri, G ; Eaton, B. T ; Wang, L.-F</creatorcontrib><description>Nariva virus (NarPV) was isolated from forest rodents (Zygodontomys b. brevicauda) in eastern Trinidad in the early 1960s. Initial classification within the family Paramyxoviridae was based mainly on morphological observations including the structure of nucleocapsids and virion surface projections. Here, we report the characterization of the complete genome sequence of NarPV. The genome is 15,276 nucleotides in length, conforming to the rule-of-six, and has a genome organization typical of most members of the family, with six transcriptional units in the order 3'-N-P-M-F-H-L-5'. The gene junctions contain highly conserved gene start and stop signals and a tri-nucleotide intergenic sequence present in most members of the subfamily Paramyxovirinae. Sequence comparison studies indicate that NarPV is most closely related to Mossman virus, which was isolated from wild rats (Rattus leucopus) in Queensland, Australia, in 1970. This study confirmed the classification of NarPV as a member of the subfamily Paramyxovirinae and established the close genome organization and sequence relationship between the two rodent paramyxoviruses isolated almost a decade apart and from two locations separated by more than 15,000 km.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-008-0287-3</identifier><identifier>PMID: 19104752</identifier><language>eng</language><publisher>Vienna: Vienna : Springer Vienna</publisher><subject>Animals ; Bats ; Biological and medical sciences ; Biomedical and Life Sciences ; Biomedicine ; DNA, Intergenic - genetics ; Fundamental and applied biological sciences. Psychology ; Genome, Viral ; Genomes ; Infectious Diseases ; Measles ; Medical Microbiology ; Microbiology ; Miscellaneous ; Molecular Sequence Data ; Original ; Original Article ; Paramyxoviridae ; Paramyxoviridae - classification ; Paramyxoviridae - genetics ; Paramyxovirus ; Phylogeny ; Rattus leucopus ; Rodentia - virology ; Rodents ; Sequence Alignment ; Trinidad and Tobago ; Viral Proteins - genetics ; Virology ; Viruses</subject><ispartof>Archives of virology, 2009-02, Vol.154 (2), p.199-207</ispartof><rights>Springer-Verlag 2008</rights><rights>2009 INIST-CNRS</rights><rights>Springer-Verlag 2009</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c552t-854631f2f9682d8aab4f07de13d1be6bf7ef656df63e17cdde036be2cb793463</citedby><cites>FETCH-LOGICAL-c552t-854631f2f9682d8aab4f07de13d1be6bf7ef656df63e17cdde036be2cb793463</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00705-008-0287-3$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00705-008-0287-3$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>230,314,776,780,881,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=21172151$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19104752$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lambeth, L. S</creatorcontrib><creatorcontrib>Yu, M</creatorcontrib><creatorcontrib>Anderson, D. E</creatorcontrib><creatorcontrib>Crameri, G</creatorcontrib><creatorcontrib>Eaton, B. T</creatorcontrib><creatorcontrib>Wang, L.-F</creatorcontrib><title>Complete genome sequence of Nariva virus, a rodent paramyxovirus</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>Nariva virus (NarPV) was isolated from forest rodents (Zygodontomys b. brevicauda) in eastern Trinidad in the early 1960s. Initial classification within the family Paramyxoviridae was based mainly on morphological observations including the structure of nucleocapsids and virion surface projections. Here, we report the characterization of the complete genome sequence of NarPV. The genome is 15,276 nucleotides in length, conforming to the rule-of-six, and has a genome organization typical of most members of the family, with six transcriptional units in the order 3'-N-P-M-F-H-L-5'. The gene junctions contain highly conserved gene start and stop signals and a tri-nucleotide intergenic sequence present in most members of the subfamily Paramyxovirinae. Sequence comparison studies indicate that NarPV is most closely related to Mossman virus, which was isolated from wild rats (Rattus leucopus) in Queensland, Australia, in 1970. This study confirmed the classification of NarPV as a member of the subfamily Paramyxovirinae and established the close genome organization and sequence relationship between the two rodent paramyxoviruses isolated almost a decade apart and from two locations separated by more than 15,000 km.</description><subject>Animals</subject><subject>Bats</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>DNA, Intergenic - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Infectious Diseases</subject><subject>Measles</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>Miscellaneous</subject><subject>Molecular Sequence Data</subject><subject>Original</subject><subject>Original Article</subject><subject>Paramyxoviridae</subject><subject>Paramyxoviridae - classification</subject><subject>Paramyxoviridae - genetics</subject><subject>Paramyxovirus</subject><subject>Phylogeny</subject><subject>Rattus leucopus</subject><subject>Rodentia - virology</subject><subject>Rodents</subject><subject>Sequence Alignment</subject><subject>Trinidad and Tobago</subject><subject>Viral Proteins - genetics</subject><subject>Virology</subject><subject>Viruses</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNqFkU1v1DAQhi0EokvhB3CBCAlOBGbs-CMXBFrxJVVwoJwtJxkvqZJ4a29W9N_jbVYtcICLLc087-sZv4w9RniFAPp1ygfIEsCUwI0uxR22wkrw0uja3GUrEFCVRoE5YQ9SugDIBSHvsxOsESot-Yq9XYdxO9COig1NYaQi0eVMU0tF8MUXF_u9K_Z9nNPLwhUxdDTtiq2Lbrz6Ga7rD9k974ZEj473KTv_8P58_ak8-_rx8_rdWdlKyXelkZUS6LmvleGdca6pPOiOUHTYkGq8Jq-k6rwShLrtOgKhGuJto2uRpafszWK7nZuRujbPEd1gt7EfXbyywfX2z87U_7CbsLcajFISs8GLo0EMecO0s2OfWhoGN1GYk1WqRi24_C_IoeJQm4Pjs7_AizDHKX-C5chFLQFNhnCB2hhSiuRvRkawhxDtEqLNIdpDiFZkzZPfd71VHFPLwPMj4FLrBh_d1PbphuOImuP1znzhUm5NG4q3E_7r9aeLyLtg3SZm4-_fOKAAlLVQWItfiOO90A</recordid><startdate>20090201</startdate><enddate>20090201</enddate><creator>Lambeth, L. 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Psychology</topic><topic>Genome, Viral</topic><topic>Genomes</topic><topic>Infectious Diseases</topic><topic>Measles</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>Miscellaneous</topic><topic>Molecular Sequence Data</topic><topic>Original</topic><topic>Original Article</topic><topic>Paramyxoviridae</topic><topic>Paramyxoviridae - classification</topic><topic>Paramyxoviridae - genetics</topic><topic>Paramyxovirus</topic><topic>Phylogeny</topic><topic>Rattus leucopus</topic><topic>Rodentia - virology</topic><topic>Rodents</topic><topic>Sequence Alignment</topic><topic>Trinidad and Tobago</topic><topic>Viral Proteins - genetics</topic><topic>Virology</topic><topic>Viruses</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lambeth, L. S</creatorcontrib><creatorcontrib>Yu, M</creatorcontrib><creatorcontrib>Anderson, D. E</creatorcontrib><creatorcontrib>Crameri, G</creatorcontrib><creatorcontrib>Eaton, B. 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S</au><au>Yu, M</au><au>Anderson, D. E</au><au>Crameri, G</au><au>Eaton, B. T</au><au>Wang, L.-F</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Complete genome sequence of Nariva virus, a rodent paramyxovirus</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2009-02-01</date><risdate>2009</risdate><volume>154</volume><issue>2</issue><spage>199</spage><epage>207</epage><pages>199-207</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>Nariva virus (NarPV) was isolated from forest rodents (Zygodontomys b. brevicauda) in eastern Trinidad in the early 1960s. Initial classification within the family Paramyxoviridae was based mainly on morphological observations including the structure of nucleocapsids and virion surface projections. Here, we report the characterization of the complete genome sequence of NarPV. The genome is 15,276 nucleotides in length, conforming to the rule-of-six, and has a genome organization typical of most members of the family, with six transcriptional units in the order 3'-N-P-M-F-H-L-5'. The gene junctions contain highly conserved gene start and stop signals and a tri-nucleotide intergenic sequence present in most members of the subfamily Paramyxovirinae. Sequence comparison studies indicate that NarPV is most closely related to Mossman virus, which was isolated from wild rats (Rattus leucopus) in Queensland, Australia, in 1970. 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| subjects | Animals Bats Biological and medical sciences Biomedical and Life Sciences Biomedicine DNA, Intergenic - genetics Fundamental and applied biological sciences. Psychology Genome, Viral Genomes Infectious Diseases Measles Medical Microbiology Microbiology Miscellaneous Molecular Sequence Data Original Original Article Paramyxoviridae Paramyxoviridae - classification Paramyxoviridae - genetics Paramyxovirus Phylogeny Rattus leucopus Rodentia - virology Rodents Sequence Alignment Trinidad and Tobago Viral Proteins - genetics Virology Viruses |
| title | Complete genome sequence of Nariva virus, a rodent paramyxovirus |
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