Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae
Anaerobic oxidation of methane (AOM) is a major biological process that reduces global methane emission to the atmosphere. Anaerobic methanotrophic archaea (ANME) mediate this process through the coupling of methane oxidation to different electron acceptors, or in concert with a syntrophic bacterial...
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description | Anaerobic oxidation of methane (AOM) is a major biological process that reduces global methane emission to the atmosphere. Anaerobic methanotrophic archaea (ANME) mediate this process through the coupling of methane oxidation to different electron acceptors, or in concert with a syntrophic bacterial partner. Recently, ANME belonging to the archaeal family
Methanoperedenaceae
(formerly known as ANME-2d) were shown to be capable of AOM coupled to nitrate and iron reduction. Here, a freshwater sediment bioreactor fed with methane and Mn(IV) oxides (birnessite) resulted in a microbial community dominated by two novel members of the
Methanoperedenaceae
, with biochemical profiling of the system demonstrating Mn(IV)-dependent AOM. Genomic and transcriptomic analyses revealed the expression of key genes involved in methane oxidation and several shared multiheme
c
-type cytochromes (MHCs) that were differentially expressed, indicating the likely use of different extracellular electron transfer pathways. We propose the names “
Candidatus
Methanoperedens manganicus” and “
Candidatus
Methanoperedens manganireducens” for the two newly described
Methanoperedenaceae
species. This study demonstrates the ability of members of the
Methanoperedenaceae
to couple AOM to the reduction of Mn(IV) oxides, which suggests their potential role in linking methane and manganese cycling in the environment. |
doi_str_mv | 10.1038/s41396-020-0590-x |
format | Article |
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Methanoperedenaceae
(formerly known as ANME-2d) were shown to be capable of AOM coupled to nitrate and iron reduction. Here, a freshwater sediment bioreactor fed with methane and Mn(IV) oxides (birnessite) resulted in a microbial community dominated by two novel members of the
Methanoperedenaceae
, with biochemical profiling of the system demonstrating Mn(IV)-dependent AOM. Genomic and transcriptomic analyses revealed the expression of key genes involved in methane oxidation and several shared multiheme
c
-type cytochromes (MHCs) that were differentially expressed, indicating the likely use of different extracellular electron transfer pathways. We propose the names “
Candidatus
Methanoperedens manganicus” and “
Candidatus
Methanoperedens manganireducens” for the two newly described
Methanoperedenaceae
species. This study demonstrates the ability of members of the
Methanoperedenaceae
to couple AOM to the reduction of Mn(IV) oxides, which suggests their potential role in linking methane and manganese cycling in the environment.</description><identifier>ISSN: 1751-7362</identifier><identifier>EISSN: 1751-7370</identifier><identifier>DOI: 10.1038/s41396-020-0590-x</identifier><identifier>PMID: 31988473</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>45/23 ; 45/91 ; 631/326/171 ; 631/326/47 ; 704/47 ; Anaerobic processes ; Anaerobiosis ; Archaea ; Archaea - genetics ; Bacteria - genetics ; BASIC BIOLOGICAL SCIENCES ; Biodegradation, Environmental ; Biogeochemistry ; Biological activity ; Biomedical and Life Sciences ; Bioreactors ; Candidatus Methanoperedenaceae ; Cytochromes ; Ecology ; Electron transfer ; Emissions control ; Environmental microbiology ; ENVIRONMENTAL SCIENCES ; Environmental Sciences & Ecology ; Evolutionary Biology ; Gene expression ; Geologic Sediments - microbiology ; Life Sciences ; Manganese ; Manganese - metabolism ; Methane ; Methane - metabolism ; Methanosarcinales - metabolism ; Microbial Ecology ; Microbial Genetics and Genomics ; Microbiology ; Microorganisms ; Nitrates - metabolism ; Oxidation ; Oxidation-Reduction ; Oxides</subject><ispartof>The ISME Journal, 2020-04, Vol.14 (4), p.1030-1041</ispartof><rights>The Author(s) 2020</rights><rights>The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c611t-b97f1bbf3ab91ba494c969dc6c1eb4a7dc27f7467a733ff231c90cbe7564a2873</citedby><cites>FETCH-LOGICAL-c611t-b97f1bbf3ab91ba494c969dc6c1eb4a7dc27f7467a733ff231c90cbe7564a2873</cites><orcidid>0000-0002-7566-1482 ; 0000-0003-3749-8730 ; 0000-0001-8559-9427 ; 0000-0002-0167-1397 ; 0000000337498730 ; 0000000275661482 ; 0000000185599427 ; 0000000201671397</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7082337/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7082337/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31988473$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/biblio/1619821$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Leu, Andy O.</creatorcontrib><creatorcontrib>Cai, Chen</creatorcontrib><creatorcontrib>McIlroy, Simon J.</creatorcontrib><creatorcontrib>Southam, Gordon</creatorcontrib><creatorcontrib>Orphan, Victoria J.</creatorcontrib><creatorcontrib>Yuan, Zhiguo</creatorcontrib><creatorcontrib>Hu, Shihu</creatorcontrib><creatorcontrib>Tyson, Gene W.</creatorcontrib><creatorcontrib>California Institute of Technology (CalTech), Pasadena, CA (United States)</creatorcontrib><title>Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae</title><title>The ISME Journal</title><addtitle>ISME J</addtitle><addtitle>ISME J</addtitle><description>Anaerobic oxidation of methane (AOM) is a major biological process that reduces global methane emission to the atmosphere. Anaerobic methanotrophic archaea (ANME) mediate this process through the coupling of methane oxidation to different electron acceptors, or in concert with a syntrophic bacterial partner. Recently, ANME belonging to the archaeal family
Methanoperedenaceae
(formerly known as ANME-2d) were shown to be capable of AOM coupled to nitrate and iron reduction. Here, a freshwater sediment bioreactor fed with methane and Mn(IV) oxides (birnessite) resulted in a microbial community dominated by two novel members of the
Methanoperedenaceae
, with biochemical profiling of the system demonstrating Mn(IV)-dependent AOM. Genomic and transcriptomic analyses revealed the expression of key genes involved in methane oxidation and several shared multiheme
c
-type cytochromes (MHCs) that were differentially expressed, indicating the likely use of different extracellular electron transfer pathways. We propose the names “
Candidatus
Methanoperedens manganicus” and “
Candidatus
Methanoperedens manganireducens” for the two newly described
Methanoperedenaceae
species. This study demonstrates the ability of members of the
Methanoperedenaceae
to couple AOM to the reduction of Mn(IV) oxides, which suggests their potential role in linking methane and manganese cycling in the environment.</description><subject>45/23</subject><subject>45/91</subject><subject>631/326/171</subject><subject>631/326/47</subject><subject>704/47</subject><subject>Anaerobic processes</subject><subject>Anaerobiosis</subject><subject>Archaea</subject><subject>Archaea - genetics</subject><subject>Bacteria - genetics</subject><subject>BASIC BIOLOGICAL SCIENCES</subject><subject>Biodegradation, Environmental</subject><subject>Biogeochemistry</subject><subject>Biological activity</subject><subject>Biomedical and Life Sciences</subject><subject>Bioreactors</subject><subject>Candidatus Methanoperedenaceae</subject><subject>Cytochromes</subject><subject>Ecology</subject><subject>Electron transfer</subject><subject>Emissions control</subject><subject>Environmental microbiology</subject><subject>ENVIRONMENTAL SCIENCES</subject><subject>Environmental Sciences & Ecology</subject><subject>Evolutionary Biology</subject><subject>Gene expression</subject><subject>Geologic Sediments - 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Anaerobic methanotrophic archaea (ANME) mediate this process through the coupling of methane oxidation to different electron acceptors, or in concert with a syntrophic bacterial partner. Recently, ANME belonging to the archaeal family
Methanoperedenaceae
(formerly known as ANME-2d) were shown to be capable of AOM coupled to nitrate and iron reduction. Here, a freshwater sediment bioreactor fed with methane and Mn(IV) oxides (birnessite) resulted in a microbial community dominated by two novel members of the
Methanoperedenaceae
, with biochemical profiling of the system demonstrating Mn(IV)-dependent AOM. Genomic and transcriptomic analyses revealed the expression of key genes involved in methane oxidation and several shared multiheme
c
-type cytochromes (MHCs) that were differentially expressed, indicating the likely use of different extracellular electron transfer pathways. We propose the names “
Candidatus
Methanoperedens manganicus” and “
Candidatus
Methanoperedens manganireducens” for the two newly described
Methanoperedenaceae
species. This study demonstrates the ability of members of the
Methanoperedenaceae
to couple AOM to the reduction of Mn(IV) oxides, which suggests their potential role in linking methane and manganese cycling in the environment.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>31988473</pmid><doi>10.1038/s41396-020-0590-x</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0002-7566-1482</orcidid><orcidid>https://orcid.org/0000-0003-3749-8730</orcidid><orcidid>https://orcid.org/0000-0001-8559-9427</orcidid><orcidid>https://orcid.org/0000-0002-0167-1397</orcidid><orcidid>https://orcid.org/0000000337498730</orcidid><orcidid>https://orcid.org/0000000275661482</orcidid><orcidid>https://orcid.org/0000000185599427</orcidid><orcidid>https://orcid.org/0000000201671397</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | 45/23 45/91 631/326/171 631/326/47 704/47 Anaerobic processes Anaerobiosis Archaea Archaea - genetics Bacteria - genetics BASIC BIOLOGICAL SCIENCES Biodegradation, Environmental Biogeochemistry Biological activity Biomedical and Life Sciences Bioreactors Candidatus Methanoperedenaceae Cytochromes Ecology Electron transfer Emissions control Environmental microbiology ENVIRONMENTAL SCIENCES Environmental Sciences & Ecology Evolutionary Biology Gene expression Geologic Sediments - microbiology Life Sciences Manganese Manganese - metabolism Methane Methane - metabolism Methanosarcinales - metabolism Microbial Ecology Microbial Genetics and Genomics Microbiology Microorganisms Nitrates - metabolism Oxidation Oxidation-Reduction Oxides |
title | Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae |
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